FvH4_1g01090

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000340
Physical Location & Seq
Reverse (-)
555316 .. 558725
3410 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01090.t1

Sequence Viewer

Length: 1179 bp
ATGAGCAACAAGACGTTGCTGCTGGAGGTTTGCACCAAAAAGGGGTGGGCTGCACCCCAGTACTGTATCACCAAGCAAGGCCCTGATCACATTCCTCAGTTCTCCGCCACCGTTGTCGTTAATGACGTCAGATTCGACTCTCAGGGCTTTCTCGGGTCTAAGAAGGAAGCTGAGGCATCTGCTGCCGGAATGGCGCTGGAAAAGTTTCTTGGTTATCAAAGCCAACAGCCCATCAGCCCAAATGTCAAGTCTTTCTCTTCCCCAGTGAAAGTTGGTCCTTCGCTGAAAGTTGATAGCAATCAGACATGGGGTGACACTAATATCACACCGAAGAAGAAGGGTGCAGATGAAGTGGAGCAGTTGTTGGCTCAGGAACGGAAGCTATGGCACAAGGAGAAGCTTCAGCTTGAGCTGAAAAACCTTGAATTGGCGAATGCAATTGAAGTGAAGAGTAATGAGATTCAACAATTTGAGAAGAAACTGCAACATATGAAAGAGATGGCAACAATGGAGCAGAAGAAAACTGAAAGGATGTTATCATTGGTAGAAGAGAAAAAGGGAGAAAATGAGAAACTCCATATGAAAGTGGCTGAACTGGAAAAGCAACTCCAGGCAGTGAGTGGGGATATGGAAGGGGGAAAGAAGATTATCGGTCTCTCCGACTCTTTCAGAAAGGAGCAAAGCTATAAAGATGAACTTGAGCAGACTCGTAAGGCGTTGATCAATGTATTATGTGATGGTTCAAAAGAGAATATTGGGGTTAAAAGATTGGGAGATCTTGAATGGGAAGCATTTCAAGTTGCAGCTAAAAGAGAGTATTTTGTAGAAGAAGAGGTAAATGGAAGGGCAAAGGAGTTATGCTCAATATGGGAGAATTACATTGGAGATTCTAATTGGAAGCCATTCAAGGTCATCACGGATATGAGAGGAAGGATCAAGGAAATCATTGACGAGGAAGATGAAAAGTTGAAGAAGTTAAAGGTGGAACTGGGTAATGAAGCATACGATACAGTGATAACTGCACTGTTGGAAATGAAGGAGTATAATCCGTTTGGTAGATATAAGGTAGAGGAGCTATGGAATTTCCAACAAGGTAGGAAGGCATCATTGATGGAGGGAGTCCAATATCTTCTTAAGCAACTTGATTTGGTCAACACTAACAAGCGACGAAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

393

Amino Acids

44.96

Weight (kDa)

7.57

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DND1_DSRM PF14709 3 - 66 2.6e-06 double strand RNA binding domain from DEAD END PROTEIN 1
dsrm PF00035 4 - 68 1.4e-11 Double-stranded RNA binding motif
XH PF03469 255 - 382 2.4e-44 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
AciI CCGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 941
AcsI RAATTY 1 cut(s) 1081
AcuI CTGAAG 1 cut(s) 386
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 42, 427
AflII CTTAAG 1 cut(s) 1133
AgsI TTSAA 8 cut(s) 425, 443, 464, 744, 782, 797, 907, 970
AjnI CCWGG 1 cut(s) 609
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
AluBI AGCT 8 cut(s) 170, 382, 400, 406, 412, 684, 806, 1075
AluI AGCT 8 cut(s) 170, 382, 400, 406, 412, 684, 806, 1075
Alw26I GTCTC 1 cut(s) 659
AlwI GGATC 1 cut(s) 941
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 4 cut(s) 19, 50, 182, 803
ApoI RAATTY 1 cut(s) 1081
ArsI GACNNNNNNTTYG 4 cut(s) 116, 148, 233, 265
Asp700I GAANNNNTTC 3 cut(s) 204, 792, 902
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 2 cut(s) 80, 275
AsuHPI GGTGA 2 cut(s) 61, 323
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 275
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 4 cut(s) 6, 37, 169, 815
BccI CCATC 4 cut(s) 239, 493, 731, 1105
BciT130I CCWGG 1 cut(s) 611
BclI TGATCA 2 cut(s) 85, 720
BcoDI GTCTC 1 cut(s) 659
BfoI RGCGCY 1 cut(s) 197
BfrI CTTAAG 1 cut(s) 1133
BglI GCCNNNNNGGC 1 cut(s) 191
BglII AGATCT 1 cut(s) 775
BisI GCNGC 4 cut(s) 20, 51, 183, 804
BlsI GCNGC 4 cut(s) 21, 52, 184, 805
BmcAI AGTACT 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 611
Bme18I GGWCC 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 2 cut(s) 80, 275
BmrFI CCNGG 1 cut(s) 611
BmrI ACTGGG 3 cut(s) 52, 257, 998
BmsI GCATC 2 cut(s) 185, 1112
BmuI ACTGGG 3 cut(s) 52, 257, 998
BplI GAGNNNNNCTC 2 cut(s) 845, 877
BpmI CTGGAG 2 cut(s) 44, 593
Bpu10I CCTNAGC 2 cut(s) 171, 369
BpuEI CTTGAG 2 cut(s) 428, 719
BsaBI GATNNNNATC 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 659
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 427
Bse1I ACTGG 4 cut(s) 58, 263, 600, 993
Bse8I GATNNNNATC 1 cut(s) 297
BseBI CCWGG 1 cut(s) 611
BseGI GGATG 1 cut(s) 537
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 2 cut(s) 42, 427
BseMII CTCAG 4 cut(s) 110, 155, 162, 383
BseNI ACTGG 4 cut(s) 58, 263, 600, 993
BseRI GAGGAG 1 cut(s) 1085
BseXI GCAGC 4 cut(s) 6, 37, 169, 815
BsgI GTGCAG 3 cut(s) 36, 363, 1005
BshFI GGCC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 2 cut(s) 42, 427
BsmAI GTCTC 1 cut(s) 659
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 1 cut(s) 81
Bso31I GGTCTC 1 cut(s) 659
BsoBI CYCGRG 1 cut(s) 152
Bsp143I GATC 4 cut(s) 85, 720, 775, 933
BspACI CCGC 1 cut(s) 105
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 4 cut(s) 109, 154, 163, 382
BspPI GGATC 1 cut(s) 941
BspTI CTTAAG 1 cut(s) 1133
BspTNI GGTCTC 1 cut(s) 659
BsrI ACTGG 4 cut(s) 58, 263, 600, 993
BssMI GATC 4 cut(s) 85, 720, 775, 933
BssNI GRCGYC 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 611
Bst4CI ACNGT 4 cut(s) 65, 112, 1012, 1026
Bst6I CTCTTC 4 cut(s) 262, 443, 543, 825
BstACI GRCGYC 1 cut(s) 126
BstAFI CTTAAG 1 cut(s) 1133
BstAPI GCANNNNNTGC 1 cut(s) 182
BstDEI CTNAG 5 cut(s) 96, 141, 159, 171, 369
BstF5I GGATG 1 cut(s) 537
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 4 cut(s) 88, 723, 778, 936
BstMAI GTCTC 1 cut(s) 659
BstMBI GATC 4 cut(s) 85, 720, 775, 933
BstMWI GCNNNNNNNGC 2 cut(s) 182, 191
BstNI CCWGG 1 cut(s) 611
BstSCI CCNGG 1 cut(s) 609
BstV1I GCAGC 4 cut(s) 6, 37, 169, 815
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
BsuRI GGCC 1 cut(s) 81
BtsCI GGATG 1 cut(s) 537
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 4 cut(s) 270, 621, 1017, 1022
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 80, 275
Csp6I GTAC 1 cut(s) 61
CviAII CATG 1 cut(s) 306
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 5 cut(s) 96, 141, 159, 171, 369
DpnI GATC 4 cut(s) 87, 722, 777, 935
DpnII GATC 4 cut(s) 85, 720, 775, 933
Eam1104I CTCTTC 4 cut(s) 262, 443, 543, 825
EarI CTCTTC 4 cut(s) 262, 443, 543, 825
EciI GGCGGA 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 659
Eco47I GGWCC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 386
Eco88I CYCGRG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 609
FaeI CATG 1 cut(s) 309
FalI AAGNNNNNCTT 2 cut(s) 681, 713
FatI CATG 1 cut(s) 305
FauNDI CATATG 2 cut(s) 489, 579
FbaI TGATCA 2 cut(s) 85, 720
Fnu4HI GCNGC 4 cut(s) 20, 51, 183, 804
FokI GGATG 1 cut(s) 544
Fsp4HI GCNGC 4 cut(s) 20, 51, 183, 804
GlaI GCGC 1 cut(s) 195
GluI GCNGC 4 cut(s) 20, 51, 183, 804
GsuI CTGGAG 2 cut(s) 44, 593
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 196
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 1 cut(s) 309
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 1 cut(s) 1153
HindII GTYRAC 1 cut(s) 1153
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 7 cut(s) 132, 137, 460, 662, 706, 887, 1119
HpaII CCGG 1 cut(s) 186
HphI GGTGA 2 cut(s) 61, 323
Hpy166II GTNNAC 1 cut(s) 1153
Hpy188I TCNGA 4 cut(s) 131, 303, 661, 671
Hpy188III TCNNGA 2 cut(s) 371, 779
Hpy8I GTNNAC 1 cut(s) 1153
Hpy99I CGWCG 1 cut(s) 1170
HpyAV CCTTC 8 cut(s) 157, 288, 331, 626, 837, 924, 1030, 1093
HpyCH4III ACNGT 4 cut(s) 65, 112, 1012, 1026
HpyCH4IV ACGT 2 cut(s) 14, 126
HpyCH4V TGCA 7 cut(s) 33, 53, 344, 437, 484, 803, 1022
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 191
HpyF3I CTNAG 5 cut(s) 96, 141, 159, 171, 369
HpySE526I ACGT 2 cut(s) 14, 126
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 1 cut(s) 309
HspAI GCGC 1 cut(s) 194
Ksp22I TGATCA 2 cut(s) 85, 720
Kzo9I GATC 4 cut(s) 85, 720, 775, 933
LmnI GCTCC 4 cut(s) 355, 511, 676, 1072
Lsp1109I GCAGC 4 cut(s) 6, 37, 169, 815
LweI GCATC 2 cut(s) 185, 1112
MaeII ACGT 2 cut(s) 14, 126
MaeIII GTNAC 1 cut(s) 311
MalI GATC 4 cut(s) 87, 722, 777, 935
MboI GATC 4 cut(s) 85, 720, 775, 933
MfeI CAATTG 1 cut(s) 438
MflI RGATCY 1 cut(s) 775
MluCI AATT 6 cut(s) 425, 438, 467, 874, 892, 1081
MlyI GAGTC 4 cut(s) 131, 656, 700, 1128
MmeI TCCRAC 3 cut(s) 684, 1008, 1111
MnlI CCTC 8 cut(s) 19, 105, 166, 826, 920, 946, 1063, 1108
MroXI GAANNNNTTC 3 cut(s) 204, 792, 902
MseI TTAA 4 cut(s) 120, 762, 977, 1134
MslI CAYNNNNRTG 1 cut(s) 920
MspCI CTTAAG 1 cut(s) 1133
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 611
MunI CAATTG 1 cut(s) 438
Mva1269I GAATGC 1 cut(s) 439
MvaI CCWGG 1 cut(s) 611
MwoI GCNNNNNNNGC 2 cut(s) 182, 191
NdeI CATATG 2 cut(s) 489, 579
NdeII GATC 4 cut(s) 85, 720, 775, 933
NlaIII CATG 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 311
PcsI WCGNNNNNNNCGW 3 cut(s) 123, 132, 657
PctI GAATGC 1 cut(s) 439
PdmI GAANNNNTTC 3 cut(s) 204, 792, 902
PfeI GAWTC 3 cut(s) 132, 460, 887
PkrI GCNGC 4 cut(s) 21, 52, 184, 805
PleI GAGTC 4 cut(s) 131, 656, 700, 1127
PpsI GAGTC 4 cut(s) 131, 656, 700, 1127
Psp6I CCWGG 1 cut(s) 609
PspGI CCWGG 1 cut(s) 609
PspPI GGNCC 2 cut(s) 80, 275
PsuI RGATCY 1 cut(s) 775
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
RseI CAYNNNNRTG 1 cut(s) 920
SaqAI TTAA 4 cut(s) 120, 762, 977, 1134
SatI GCNGC 4 cut(s) 20, 51, 183, 804
Sau3AI GATC 4 cut(s) 85, 720, 775, 933
Sau96I GGNCC 2 cut(s) 80, 275
ScaI AGTACT 1 cut(s) 62
SchI GAGTC 4 cut(s) 131, 656, 700, 1128
ScrFI CCNGG 1 cut(s) 611
SfaNI GCATC 2 cut(s) 185, 1112
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 920
SmlI CTYRAG 3 cut(s) 407, 698, 1133
SmoI CTYRAG 3 cut(s) 407, 698, 1133
Sse9I AATT 6 cut(s) 425, 438, 467, 874, 892, 1081
SsiI CCGC 1 cut(s) 105
SspI AATATT 1 cut(s) 754
StyD4I CCNGG 1 cut(s) 609
TaaI ACNGT 4 cut(s) 65, 112, 1012, 1026
TaiI ACGT 2 cut(s) 17, 129
TaqI TCGA 1 cut(s) 135
TaqII GACCGA 1 cut(s) 641
TasI AATT 6 cut(s) 425, 438, 467, 874, 892, 1081
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 3 cut(s) 132, 460, 887
Tru1I TTAA 4 cut(s) 120, 762, 977, 1134
Tru9I TTAA 4 cut(s) 120, 762, 977, 1134
TscAI CASTG 4 cut(s) 270, 621, 1017, 1029
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 4 cut(s) 19, 50, 182, 803
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 7 cut(s) 363, 506, 596, 708, 975, 1011, 1049
TspGWI ACGGA 3 cut(s) 391, 932, 1038
TspRI CASTG 4 cut(s) 270, 621, 1017, 1029
Vha464I CTTAAG 1 cut(s) 1133
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 1 cut(s) 1081
XcmI CCANNNNNNNNNTGG 1 cut(s) 617
XmnI GAANNNNTTC 3 cut(s) 204, 792, 902
ZraI GACGTC 1 cut(s) 127
ZrmI AGTACT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.