Rw6G016420

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000340
Physical Location & Seq
Reverse (-)
32348162 .. 32351116
2955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G016420.1

Sequence Viewer

Length: 1194 bp
ATGCTTACCTCTAAGAAAGAAGCCGAGTGCTGTGCTGCTGGGTTGGCCTTCGATTACTTCAATGAAAACCCACAACCACCCCAGCCCAAACGCACCAAGTGTTTCTCTTTCCCGGCTCAGCCGTCTCATATAGCCTCACTTCCTCCACCTTCATCACCAGTTTCTAGTTTTATGTTCTGTTTCTATTGTTGGGTCTCTCGTAGTTCTGATTTCATGTCTGTGTATCATGTTCGCTGTATCTCACATACAAGGAGAGAGATATGGAATGAGACAACTAGCACAGAGGGAAAGAAGGACACTTATGAACTGGAGCTAATGTTGGCAGAAGAGAGAAAGCTATGGCAGAGAGAAAAGCATCAGCTTCAACTAAAGAACATTGAATTGGAGAATCATATTGATATGAAAAAGAATGAGCTGGAGCACTGCCGCAAGGAGCTACAGCATATGCAGAAGAAGGCAGAAAATCTGATAGCGCTGGCAGAAAAGAGAAAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAGGCCCAAACGAATATTAAACAGGAGCTTACTGATCTGTCAGAATTTTACAATGCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTACAGGGGGCCCGTAAAGAGTTAATTGATGGACTGAAAAATCATTCAAAACTCTATATTGGCGTGAAGACATTGGGTGATCTTGACTTGAAGGCATTTCAAGTTGCAGCCAAGAGAAGATATACTGCTATAGAAGAAGCAAATGAGAGGGCAGTGGAGTTGTGCTCTGTGTGGGAGGATTATGTTGGGGATTCTAATTGGAACCCATACAAGGAAATTATTGATGAAGAAGATAAAAAATTGAAAATTTTGAAGACTGAGCTGGGGAATGAAGTATACAAGGTGGTGACAACTTCATTAATGGAATTGAATGAACATAATTCCAGTGGGAGGTATAGGATACAAGAGCTTTGGAATTTTAAAGCAGGGAGGAAGGCAACACTTAAAGAGGGAGTTGCTTACATTTTGAAGCAATGGAACGCGCTTAAAGAACACGAAGTGGAGAAGAAACTAAAAGTAAGGCATATACTACCTCCACTGTTTGAATCAAATCTATTATCGTGCTTCTTCGTAATTGTGCATTTCATAAAATTGTTTGAGAAATTGATGTTCAGTGTGCTACATTCTACTCAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

397

Amino Acids

46.45

Weight (kDa)

7.2

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 228 - 349 3.9e-43 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 891
AccII CGCG 1 cut(s) 1037
AciI CCGC 1 cut(s) 427
AcsI RAATTY 3 cut(s) 569, 861, 970
AdeI CACNNNGTG 2 cut(s) 99, 1054
AfeI AGCGCT 1 cut(s) 474
AfiI CCNNNNNNNGG 2 cut(s) 826, 945
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
Alw21I GWGCWC 2 cut(s) 423, 782
Alw26I GTCTC 3 cut(s) 129, 199, 263
Aor51HI AGCGCT 1 cut(s) 474
AoxI GGCC 3 cut(s) 45, 528, 624
ApaI GGGCCC 1 cut(s) 628
ApeKI GCWGC 2 cut(s) 35, 722
ApoI RAATTY 3 cut(s) 569, 861, 970
AseI ATTAAT 1 cut(s) 914
AspLEI GCGC 2 cut(s) 475, 1039
AspS9I GGNCC 3 cut(s) 529, 624, 625
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 3 cut(s) 147, 704, 913
BaeGI GKGCMC 1 cut(s) 628
BanII GRGCYC 1 cut(s) 628
BbsI GAAGAC 2 cut(s) 689, 875
Bbv12I GWGCWC 2 cut(s) 423, 782
BbvI GCAGC 2 cut(s) 22, 734
BccI CCATC 1 cut(s) 638
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciVI GTATCC 1 cut(s) 948
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 3 cut(s) 129, 199, 263
BfaI CTAG 2 cut(s) 165, 276
BfmI CTRYAG 3 cut(s) 437, 617, 744
BfoI RGCGCY 1 cut(s) 476
BfuI GTATCC 1 cut(s) 948
BglI GCCNNNNNGGC 1 cut(s) 506
BisI GCNGC 3 cut(s) 36, 427, 723
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 3 cut(s) 37, 428, 724
Bme1390I CCNGG 1 cut(s) 113
BmgT120I GGNCC 3 cut(s) 529, 624, 625
BmiI GGNNCC 3 cut(s) 625, 626, 818
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 364
BpiI GAAGAC 2 cut(s) 689, 875
BplI GAGNNNNNCTC 2 cut(s) 764, 796
BpmI CTGGAG 2 cut(s) 329, 437
Bpu1102I GCTNAGC 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 1170
BpuMI CCSGG 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 2 cut(s) 826, 945
Bse1I ACTGG 3 cut(s) 158, 312, 939
Bse3DI GCAATG 1 cut(s) 1034
BseLI CCNNNNNNNGG 2 cut(s) 826, 945
BseMI GCAATG 1 cut(s) 1034
BseMII CTCAG 2 cut(s) 131, 864
BseNI ACTGG 3 cut(s) 158, 312, 939
BseRI GAGGAG 1 cut(s) 613
BseSI GKGCMC 1 cut(s) 628
BseXI GCAGC 2 cut(s) 22, 734
BseYI CCCAGC 3 cut(s) 38, 81, 877
Bsh1236I CGCG 1 cut(s) 1037
BshFI GGCC 3 cut(s) 47, 530, 626
BsiHKAI GWGCWC 2 cut(s) 423, 782
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 826, 945
BsmAI GTCTC 3 cut(s) 129, 199, 263
BsmBI CGTCTC 1 cut(s) 129
BsnI GGCC 3 cut(s) 47, 530, 626
Bso31I GGTCTC 1 cut(s) 199
Bsp120I GGGCCC 1 cut(s) 624
Bsp1286I GDGCHC 3 cut(s) 423, 628, 782
Bsp143I GATC 2 cut(s) 559, 694
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 1 cut(s) 427
BspANI GGCC 3 cut(s) 47, 530, 626
BspCNI CTCAG 2 cut(s) 130, 865
BspFNI CGCG 1 cut(s) 1037
BspLI GGNNCC 3 cut(s) 625, 626, 818
BspTNI GGTCTC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 1034
BsrI ACTGG 3 cut(s) 158, 312, 939
BssMI GATC 2 cut(s) 559, 694
BssNAI GTATAC 1 cut(s) 892
Bst1107I GTATAC 1 cut(s) 892
Bst4CI ACNGT 1 cut(s) 1095
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 3 cut(s) 12, 117, 873
BstFNI CGCG 1 cut(s) 1037
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 2 cut(s) 475, 1039
BstKTI GATC 2 cut(s) 562, 697
BstMAI GTCTC 3 cut(s) 129, 199, 263
BstMBI GATC 2 cut(s) 559, 694
BstMWI GCNNNNNNNGC 2 cut(s) 44, 506
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 3 cut(s) 437, 617, 744
BstSLI GKGCMC 1 cut(s) 628
BstUI CGCG 1 cut(s) 1037
BstV1I GCAGC 2 cut(s) 22, 734
BstV2I GAAGAC 2 cut(s) 689, 875
BstZ17I GTATAC 1 cut(s) 892
BsuI GTATCC 1 cut(s) 948
BsuRI GGCC 3 cut(s) 47, 530, 626
BtsI GCAGTG 3 cut(s) 421, 516, 774
BtsIMutI CAGTG 7 cut(s) 421, 516, 581, 774, 946, 1091, 1174
Cac8I GCNNGC 1 cut(s) 477
CfoI GCGC 2 cut(s) 475, 1039
Cfr13I GGNCC 3 cut(s) 529, 624, 625
CviAII CATG 2 cut(s) 214, 227
DdeI CTNAG 3 cut(s) 12, 117, 873
DpnI GATC 2 cut(s) 561, 696
DpnII GATC 2 cut(s) 559, 694
DraI TTTAAA 1 cut(s) 976
DraIII CACNNNGTG 2 cut(s) 99, 1054
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 628
Eco31I GGTCTC 1 cut(s) 199
Eco47III AGCGCT 1 cut(s) 474
EcoO109I RGGNCCY 1 cut(s) 624
EcoT38I GRGCYC 1 cut(s) 628
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 2 cut(s) 217, 230
FatI CATG 2 cut(s) 213, 226
FauNDI CATATG 1 cut(s) 444
FblI GTMKAC 1 cut(s) 891
Fnu4HI GCNGC 3 cut(s) 36, 427, 723
FriOI GRGCYC 1 cut(s) 628
Fsp4HI GCNGC 3 cut(s) 36, 427, 723
FspBI CTAG 2 cut(s) 165, 276
GlaI GCGC 2 cut(s) 474, 1038
GluI GCNGC 3 cut(s) 36, 427, 723
GsaI CCCAGC 3 cut(s) 42, 85, 881
GsuI CTGGAG 2 cut(s) 329, 437
HaeII RGCGCY 1 cut(s) 476
HaeIII GGCC 3 cut(s) 47, 530, 626
HapII CCGG 1 cut(s) 113
HhaI GCGC 2 cut(s) 475, 1039
Hin1II CATG 2 cut(s) 217, 230
Hin6I GCGC 2 cut(s) 473, 1037
HinP1I GCGC 2 cut(s) 473, 1037
HinfI GANTC 3 cut(s) 388, 806, 1100
HpaII CCGG 1 cut(s) 113
HphI GGTGA 3 cut(s) 147, 704, 913
Hpy166II GTNNAC 1 cut(s) 892
Hpy188I TCNGA 3 cut(s) 208, 468, 568
Hpy188III TCNNGA 2 cut(s) 698, 1187
Hpy8I GTNNAC 1 cut(s) 892
HpyAV CCTTC 6 cut(s) 58, 159, 286, 448, 700, 982
HpyCH4III ACNGT 1 cut(s) 1095
HpyCH4V TGCA 4 cut(s) 448, 581, 722, 1135
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 506
HpyF3I CTNAG 3 cut(s) 12, 117, 873
Hsp92II CATG 2 cut(s) 217, 230
HspAI GCGC 2 cut(s) 473, 1037
Kzo9I GATC 2 cut(s) 559, 694
LmnI GCTCC 6 cut(s) 310, 418, 433, 498, 550, 600
Lsp1109I GCAGC 2 cut(s) 22, 734
LweI GCATC 1 cut(s) 364
MaeI CTAG 2 cut(s) 165, 276
MaeIII GTNAC 1 cut(s) 901
MalI GATC 2 cut(s) 561, 696
MboI GATC 2 cut(s) 559, 694
MhlI GDGCHC 3 cut(s) 423, 628, 782
MseI TTAA 6 cut(s) 543, 638, 914, 975, 999, 1041
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 1037
MwoI GCNNNNNNNGC 2 cut(s) 44, 506
NciI CCSGG 1 cut(s) 113
NdeI CATATG 1 cut(s) 444
NdeII GATC 2 cut(s) 559, 694
NlaIII CATG 2 cut(s) 217, 230
NlaIV GGNNCC 3 cut(s) 625, 626, 818
NmeAIII GCCGAG 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 901
PfeI GAWTC 3 cut(s) 388, 806, 1100
PkrI GCNGC 3 cut(s) 37, 428, 724
PshBI ATTAAT 1 cut(s) 914
PspFI CCCAGC 3 cut(s) 38, 81, 877
PspN4I GGNNCC 3 cut(s) 625, 626, 818
PspOMI GGGCCC 1 cut(s) 624
PspPI GGNCC 3 cut(s) 529, 624, 625
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 6 cut(s) 543, 638, 914, 975, 999, 1041
SatI GCNGC 3 cut(s) 36, 427, 723
Sau3AI GATC 2 cut(s) 559, 694
Sau96I GGNCC 3 cut(s) 529, 624, 625
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 3 cut(s) 423, 628, 782
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 3 cut(s) 437, 617, 744
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 1185
SmoI CTYRAG 1 cut(s) 1185
SsiI CCGC 1 cut(s) 427
SspI AATATT 1 cut(s) 541
SspMI CTAG 2 cut(s) 165, 276
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 1095
TaqI TCGA 1 cut(s) 51
TauI GCSGC 1 cut(s) 429
TfiI GAWTC 3 cut(s) 388, 806, 1100
Tru1I TTAA 6 cut(s) 543, 638, 914, 975, 999, 1041
Tru9I TTAA 6 cut(s) 543, 638, 914, 975, 999, 1041
TscAI CASTG 7 cut(s) 428, 516, 588, 774, 946, 1098, 1174
TseFI GTSAC 1 cut(s) 901
TseI GCWGC 2 cut(s) 35, 722
Tsp45I GTSAC 1 cut(s) 901
TspRI CASTG 7 cut(s) 428, 516, 588, 774, 946, 1098, 1174
VspI ATTAAT 1 cut(s) 914
XapI RAATTY 3 cut(s) 569, 861, 970
XmiI GTMKAC 1 cut(s) 891
XspI CTAG 2 cut(s) 165, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.