FvH4_3g36253

XH XS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000340
Physical Location & Seq
Forward (+)
31066662 .. 31074921
8260 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36253.t5

Sequence Viewer

Length: 1128 bp
ATGTGTCACAAATCAGAGGAAAGGGATATGGGAAAACTGCAACAAAATGCTCGTCACTATCTTGAAAAAGCCTTCTTGGGGCAAGACAAAGCCCTTCCAATATCTGAAGAGAAAAACAATGATCTTAAGAAAAAGCTTGAAGAGAATGAGGCTGAAAAGAAAGATCTTGACAAAAAGCTGAAGGAAAGTAAAGTCGCTAAGAAAGAGCATGAGAAGACCTTAGATGCGCTTACTGCTGCGGAAAAGCACCAGCAGAGGGAAACTCAGATGAACGAGATTCTGAAAAAGCTTGAGCAGAGTGAATCTGAGAAGAAAGAGCTTGAGAAGATTGAAGAGGCTCAAGCGAAAGAACTTAAGAAGGCGCTTGAGCAGATCGAAGCTCAAAAGAAAGATCTTGAGCAGCATGAGATTAAAATAAAACAATTGGAGATGGTTAATCTTGACCACAGGAAGGCTACTGAAAATTTGTTAAAACAAAAGAAAGAAAATGAGGAGCTCCGAAAGAGGATCACTGAATTGGAGGATCAAAAGGATCAGGCTGCGGAGGATTCAGGTGAAATTCGAATCAAGTTAAAGGAGAAGGAAGAAGAGCTGGCCAATGTTGAAGCTCTTAACAATACACTTATTGTAAAGGAGCTCAAAAGCAACACTGAATTGCAGGAGGCTCGTACAGAGTTGATCAGAGGATGGGAATCAGCAAGTCGTGCTTTTATTCGTCTCAAGAGAATGGGAGGGCTTGACTGCAGGCCATTTCAGACTGCATGCAAGAGAAAATATCCTACAGAAGAAATAAATGTACAGGCAGCAGCACTATGTTCTCTTTGGGAGAGTTATATTGGGGATCCAAGCTGGCATCCGTTCAAAGTTAGCACGGCTTCCTTTGGGCATAATAAGGAAATTATAAATGAAGAAGATGAAAAAATGAAAAAGTTAAAGAACGAGTTTGGTGTTGAAGTTCATCTAGCTGTGTCAACTGCTTTGCTGGAATTGAATGAGTATAATCCGAGTGGTAGGTATCCACTTAATGAACTATGGAATTTCAAAGAAGATAGGAGGGCATCATTGAAAGAGGCAATATTGCATATCATGAAGCAGTTGAAACAAAAAAAGAAGAGAAGAACCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XH XS zf-XS

Protein Analysis

376

Amino Acids

43.97

Weight (kDa)

7.64

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NET2A PF25014 231 - 297 1.6e-06 NET2A-like domain
XH PF03469 312 - 443 2.1e-52 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 902
AciI CCGC 2 cut(s) 239, 542
AclWI GGATC 5 cut(s) 515, 531, 540, 836, 849
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 3 cut(s) 463, 558, 1036
AcuI CTGAAG 2 cut(s) 126, 200
AfaI GTAC 2 cut(s) 670, 798
AfiI CCNNNNNNNGG 3 cut(s) 78, 256, 451
AflII CTTAAG 2 cut(s) 125, 353
Alw21I GWGCWC 2 cut(s) 498, 639
Alw26I GTCTC 1 cut(s) 722
AlwI GGATC 5 cut(s) 515, 531, 540, 836, 849
AoxI GGCC 2 cut(s) 594, 746
ApeKI GCWGC 5 cut(s) 236, 400, 539, 803, 806
ApoI RAATTY 3 cut(s) 463, 558, 1036
ArsI GACNNNNNNTTYG 2 cut(s) 37, 69
AspLEI GCGC 2 cut(s) 229, 364
AsuHPI GGTGA 1 cut(s) 566
AsuII TTCGAA 1 cut(s) 562
BalI TGGCCA 1 cut(s) 596
BamHI GGATCC 1 cut(s) 841
BanII GRGCYC 2 cut(s) 498, 639
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 2 cut(s) 498, 639
BbvI GCAGC 5 cut(s) 223, 412, 526, 815, 818
BccI CCATC 2 cut(s) 424, 681
BceAI ACGGC 1 cut(s) 888
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciVI GTATCC 1 cut(s) 1026
BclI TGATCA 1 cut(s) 678
BcoDI GTCTC 1 cut(s) 722
BfaI CTAG 1 cut(s) 962
BfmI CTRYAG 2 cut(s) 742, 780
BfoI RGCGCY 1 cut(s) 365
BfrI CTTAAG 2 cut(s) 125, 353
BfuI GTATCC 1 cut(s) 1026
BglII AGATCT 2 cut(s) 163, 391
BisI GCNGC 5 cut(s) 237, 401, 540, 804, 807
BlsI GCNGC 5 cut(s) 238, 402, 541, 805, 808
BmiI GGNNCC 1 cut(s) 843
BmsI GCATC 3 cut(s) 214, 862, 1067
BpiI GAAGAC 1 cut(s) 221
BplI GAGNNNNNCTC 2 cut(s) 247, 279
Bpu14I TTCGAA 1 cut(s) 562
BpuEI CTTGAG 6 cut(s) 311, 324, 341, 386, 416, 704
BsaBI GATNNNNATC 1 cut(s) 691
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 256, 451
Bse8I GATNNNNATC 1 cut(s) 691
BseGI GGATG 2 cut(s) 692, 853
BseJI GATNNNNATC 1 cut(s) 691
BseLI CCNNNNNNNGG 3 cut(s) 78, 256, 451
BseMII CTCAG 2 cut(s) 278, 297
BseRI GAGGAG 1 cut(s) 506
BseXI GCAGC 5 cut(s) 223, 412, 526, 815, 818
BshFI GGCC 2 cut(s) 596, 748
BsiHKAI GWGCWC 2 cut(s) 498, 639
BslI CCNNNNNNNGG 3 cut(s) 78, 256, 451
BsmAI GTCTC 1 cut(s) 722
BsmBI CGTCTC 1 cut(s) 722
BsnI GGCC 2 cut(s) 596, 748
Bsp119I TTCGAA 1 cut(s) 562
Bsp1286I GDGCHC 2 cut(s) 498, 639
Bsp1407I TGTACA 1 cut(s) 796
Bsp143I GATC 9 cut(s) 121, 163, 372, 391, 507, 523, 532, 678, 841
BspACI CCGC 2 cut(s) 239, 542
BspANI GGCC 2 cut(s) 596, 748
BspCNI CTCAG 2 cut(s) 277, 298
BspHI TCATGA 1 cut(s) 1086
BspLI GGNNCC 1 cut(s) 843
BspMAI CTGCAG 1 cut(s) 746
BspPI GGATC 5 cut(s) 515, 531, 540, 836, 849
BspQI GCTCTTC 1 cut(s) 582
BspT104I TTCGAA 1 cut(s) 562
BspTI CTTAAG 2 cut(s) 125, 353
BsrGI TGTACA 1 cut(s) 796
BssMI GATC 9 cut(s) 121, 163, 372, 391, 507, 523, 532, 678, 841
Bst6I CTCTTC 5 cut(s) 102, 135, 327, 582, 1106
BstAFI CTTAAG 2 cut(s) 125, 353
BstAPI GCANNNNNTGC 1 cut(s) 704
BstAUI TGTACA 1 cut(s) 796
BstBI TTCGAA 1 cut(s) 562
BstC8I GCNNGC 4 cut(s) 594, 746, 763, 851
BstDEI CTNAG 4 cut(s) 198, 220, 264, 306
BstF5I GGATG 2 cut(s) 692, 853
BstH2I RGCGCY 1 cut(s) 365
BstHHI GCGC 2 cut(s) 229, 364
BstKTI GATC 9 cut(s) 124, 166, 375, 394, 510, 526, 535, 681, 844
BstMAI GTCTC 1 cut(s) 722
BstMBI GATC 9 cut(s) 121, 163, 372, 391, 507, 523, 532, 678, 841
BstMWI GCNNNNNNNGC 2 cut(s) 233, 704
BstNSI RCATGY 1 cut(s) 765
BstSFI CTRYAG 2 cut(s) 742, 780
BstV1I GCAGC 5 cut(s) 223, 412, 526, 815, 818
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 3 cut(s) 163, 391, 841
BstYI RGATCY 3 cut(s) 163, 391, 841
BsuI GTATCC 1 cut(s) 1026
BsuRI GGCC 2 cut(s) 596, 748
BtsCI GGATG 2 cut(s) 692, 853
BtsIMutI CAGTG 2 cut(s) 510, 648
Cac8I GCNNGC 4 cut(s) 594, 746, 763, 851
CciI TCATGA 1 cut(s) 1086
CfoI GCGC 2 cut(s) 229, 364
Csp6I GTAC 2 cut(s) 669, 797
CviAII CATG 4 cut(s) 209, 404, 762, 1087
CviQI GTAC 2 cut(s) 669, 797
DdeI CTNAG 4 cut(s) 198, 220, 264, 306
DpnI GATC 9 cut(s) 123, 165, 374, 393, 509, 525, 534, 680, 843
DpnII GATC 9 cut(s) 121, 163, 372, 391, 507, 523, 532, 678, 841
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 5 cut(s) 102, 135, 327, 582, 1106
EarI CTCTTC 5 cut(s) 102, 135, 327, 582, 1106
Ecl136II GAGCTC 2 cut(s) 496, 637
Eco24I GRGCYC 2 cut(s) 498, 639
Eco53kI GAGCTC 2 cut(s) 496, 637
Eco57I CTGAAG 2 cut(s) 126, 200
EcoICRI GAGCTC 2 cut(s) 496, 637
EcoT38I GRGCYC 2 cut(s) 498, 639
Esp3I CGTCTC 1 cut(s) 722
FaeI CATG 4 cut(s) 212, 407, 765, 1090
FalI AAGNNNNNCTT 2 cut(s) 691, 723
FatI CATG 4 cut(s) 208, 403, 761, 1086
FbaI TGATCA 1 cut(s) 678
Fnu4HI GCNGC 5 cut(s) 237, 401, 540, 804, 807
FokI GGATG 2 cut(s) 699, 840
FriOI GRGCYC 2 cut(s) 498, 639
Fsp4HI GCNGC 5 cut(s) 237, 401, 540, 804, 807
FspBI CTAG 1 cut(s) 962
GlaI GCGC 2 cut(s) 228, 363
GluI GCNGC 5 cut(s) 237, 401, 540, 804, 807
HaeII RGCGCY 1 cut(s) 365
HaeIII GGCC 2 cut(s) 596, 748
HhaI GCGC 2 cut(s) 229, 364
Hin1II CATG 4 cut(s) 212, 407, 765, 1090
Hin6I GCGC 2 cut(s) 227, 362
HinP1I GCGC 2 cut(s) 227, 362
HincII GTYRAC 1 cut(s) 972
HindII GTYRAC 1 cut(s) 972
HindIII AAGCTT 2 cut(s) 134, 287
HinfI GANTC 5 cut(s) 277, 302, 548, 564, 692
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 1 cut(s) 972
Hpy188I TCNGA 9 cut(s) 16, 106, 267, 282, 307, 500, 683, 756, 1005
Hpy188III TCNNGA 6 cut(s) 62, 167, 395, 440, 721, 1087
Hpy8I GTNNAC 1 cut(s) 972
HpyAV CCTTC 6 cut(s) 82, 104, 175, 352, 445, 574
HpyCH4V TGCA 6 cut(s) 40, 658, 744, 761, 765, 1081
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 704
HpyF3I CTNAG 4 cut(s) 198, 220, 264, 306
Hsp92II CATG 4 cut(s) 212, 407, 765, 1090
HspAI GCGC 2 cut(s) 227, 362
Ksp22I TGATCA 1 cut(s) 678
Kzo9I GATC 9 cut(s) 121, 163, 372, 391, 507, 523, 532, 678, 841
LguI GCTCTTC 1 cut(s) 582
LmnI GCTCC 3 cut(s) 493, 501, 634
Lsp1109I GCAGC 5 cut(s) 223, 412, 526, 815, 818
LweI GCATC 3 cut(s) 214, 862, 1067
MaeI CTAG 1 cut(s) 962
MaeIII GTNAC 2 cut(s) 5, 53
MalI GATC 9 cut(s) 123, 165, 374, 393, 509, 525, 534, 680, 843
MboI GATC 9 cut(s) 121, 163, 372, 391, 507, 523, 532, 678, 841
MfeI CAATTG 1 cut(s) 422
MflI RGATCY 3 cut(s) 163, 391, 841
MhlI GDGCHC 2 cut(s) 498, 639
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 8 cut(s) 422, 463, 515, 558, 653, 897, 986, 1036
MluNI TGGCCA 1 cut(s) 596
Mox20I TGGCCA 1 cut(s) 596
MscI TGGCCA 1 cut(s) 596
Msp20I TGGCCA 1 cut(s) 596
MspCI CTTAAG 2 cut(s) 125, 353
MunI CAATTG 1 cut(s) 422
MwoI GCNNNNNNNGC 2 cut(s) 233, 704
NdeII GATC 9 cut(s) 121, 163, 372, 391, 507, 523, 532, 678, 841
NlaIII CATG 4 cut(s) 212, 407, 765, 1090
NlaIV GGNNCC 1 cut(s) 843
NmuCI GTSAC 2 cut(s) 5, 53
NspI RCATGY 1 cut(s) 765
NspV TTCGAA 1 cut(s) 562
PaeI GCATGC 1 cut(s) 765
PagI TCATGA 1 cut(s) 1086
PciSI GCTCTTC 1 cut(s) 582
PfeI GAWTC 5 cut(s) 277, 302, 548, 564, 692
PkrI GCNGC 5 cut(s) 238, 402, 541, 805, 808
PsiI TTATAA 1 cut(s) 902
Psp124BI GAGCTC 2 cut(s) 498, 639
PspN4I GGNNCC 1 cut(s) 843
PstI CTGCAG 1 cut(s) 746
PsuI RGATCY 3 cut(s) 163, 391, 841
RsaI GTAC 2 cut(s) 670, 798
RsaNI GTAC 2 cut(s) 669, 797
SacI GAGCTC 2 cut(s) 498, 639
SapI GCTCTTC 1 cut(s) 582
SatI GCNGC 5 cut(s) 237, 401, 540, 804, 807
Sau3AI GATC 9 cut(s) 121, 163, 372, 391, 507, 523, 532, 678, 841
SduI GDGCHC 2 cut(s) 498, 639
SfaNI GCATC 3 cut(s) 214, 862, 1067
SfcI CTRYAG 2 cut(s) 742, 780
SfuI TTCGAA 1 cut(s) 562
SmlI CTYRAG 8 cut(s) 125, 290, 320, 339, 353, 365, 395, 719
SmoI CTYRAG 8 cut(s) 125, 290, 320, 339, 353, 365, 395, 719
SphI GCATGC 1 cut(s) 765
Sse9I AATT 8 cut(s) 422, 463, 515, 558, 653, 897, 986, 1036
SsiI CCGC 2 cut(s) 239, 542
SspI AATATT 1 cut(s) 1077
SspMI CTAG 1 cut(s) 962
SstI GAGCTC 2 cut(s) 498, 639
TaqI TCGA 2 cut(s) 375, 562
TasI AATT 8 cut(s) 422, 463, 515, 558, 653, 897, 986, 1036
TatI WGTACW 1 cut(s) 796
TfiI GAWTC 5 cut(s) 277, 302, 548, 564, 692
TscAI CASTG 2 cut(s) 517, 655
TseFI GTSAC 2 cut(s) 5, 53
TseI GCWGC 5 cut(s) 236, 400, 539, 803, 806
Tsp45I GTSAC 2 cut(s) 5, 53
TspDTI ATGAA 7 cut(s) 284, 921, 930, 938, 947, 1041, 1103
TspGWI ACGGA 1 cut(s) 846
TspRI CASTG 2 cut(s) 517, 655
Vha464I CTTAAG 2 cut(s) 125, 353
XapI RAATTY 3 cut(s) 463, 558, 1036
XceI RCATGY 1 cut(s) 765
XspI CTAG 1 cut(s) 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.