RchiOBHm_Chr5g0065071

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000340
Physical Location & Seq
Forward (+)
70962470 .. 70967256
4787 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34097

Sequence Viewer

Length: 1374 bp
ATGTCTCACAGATCAGAAGAAATGGATATCGGAAAACTGCAACAAAATGCTCGTGACCATCTTGAAAAGGCCTTCTTGGAGCAAGGCAAAGCCTTTTCCAAATCTGAAGGGCAAAAGAAGGATCTTGAGAGAAAGCTTGAACAGAACGAGGCTCAAAAGAAAGATCTGCAGAAAAAGCTTGAGCAAAGTGAACTTGCCAAAAAAGAGCTTCAGCAGAAGACTGAAGATGTACAGATGTGGGCGGACATGTATTTTGAGGTTAGGGAAAAGCAGAAGCAGAGTGAAAATCAGATGAAAGAGATTCAGAAAAAGCTTGAGCAGAGTGAATCCCAGAAGAGAGAGCTTGAGAAGATTGAACAAGCTCAAAAGAAGGCACTTGAGCAAAGTGAACTTACCAAAAAAGAGCTTCACCAGAAGATTGGAGATGAACAGATGTTGGCAGACATGTATTTTGAGGTTAGGGAAGAGCAGATGAAAGAGATTCAGAAAAAGCTTGAGCAGAGTGAATCCCAGAAGAGAAAGCTTGAGAAGATTGAACAAGCTCAAAAGAACGAACTTAAGAAGGCACTTGAGCAGATTGAAGCTCAAAAGAAAGATTTTGAGCAGCGCGAGATGAAATTAAAACAAATGGAGGAGAGGGTTAATATTGAGCAGAGGAAGGCTAAGGAAAATTTGTTAAAAGAAAAGAAAGAAAATGAGGAGCTCCGGAACAAGATCACTGAGTTGGAGGATCGTAAGAATCAAGTTCAGGATGAGGAGGATTTAGACGATGAGTCTCAGGACGAGCATGAAGAGATGGGTGAAATTCGAGAAAAGTTAAAGGAGAAAGAAGAAGAGCTGGCCAATGTTGAAGCTCTAAACAACACACTTATTGTTAAGGAGCTTAAAAGCAACACTGAACTGCAGGAGGCTCGTAGAGAGATAACCAGAGGATGGGAATCAGCAAGTCGTGCTTTTATTGGTGTCAAGAGAATGGGAGAGCTTGACAGCAAACCATTTCAGACTGCATGCAAGAGAAAATATAATACAGAAGAAGCAGATGACCAGGCAGCAGCACTATGTTCTCTATGGGAGGATTATATTACGGATTCAAGCTGGCATCCATTCAAAACTAGCAAGGATTCCTTTGGACATTGTAAGGAGATTATTGATGAAGAAGATGAAAAATTGAAAAAGTTAAAGAACGAGTTTGGTGCTGAAGTTCATCTGGCTGTGTCAACTGCTTTGCTGGAATTGAATGAGTATAATCCCAGTGGTAGGTATGCACTTAAAGAACTATGGAACTTTAATCAAGATAGAAGGGCATCATTAAAAGAGGGAATATTGCATCTCCTGAAGCAGTTGAAACTGCAAAAGAGGAGAAGAACCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

457

Amino Acids

54.36

Weight (kDa)

5.57

Isoelectric Point (pI)

62.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 323 - 454 1.9e-53 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 933
AccII CGCG 1 cut(s) 609
AccIII TCCGGA 1 cut(s) 705
AciI CCGC 1 cut(s) 242
AclWI GGATC 2 cut(s) 129, 738
AcoI YGGCCR 1 cut(s) 840
AcsI RAATTY 2 cut(s) 670, 804
AcuI CTGAAG 5 cut(s) 126, 194, 243, 1218, 1355
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 2 cut(s) 933, 1257
AflII CTTAAG 1 cut(s) 557
AflIII ACRYGT 2 cut(s) 246, 444
AhdI GACNNNNNGTC 1 cut(s) 772
AjnI CCWGG 1 cut(s) 1044
Alw21I GWGCWC 1 cut(s) 705
Alw26I GTCTC 2 cut(s) 9, 780
AlwI GGATC 2 cut(s) 129, 738
Aor13HI TCCGGA 1 cut(s) 705
AoxI GGCC 2 cut(s) 69, 840
ApeKI GCWGC 3 cut(s) 604, 1049, 1052
ApoI RAATTY 2 cut(s) 670, 804
ArsI GACNNNNNNTTYG 4 cut(s) 236, 268, 434, 466
AspLEI GCGC 1 cut(s) 609
AsuHPI GGTGA 2 cut(s) 401, 812
BalI TGGCCA 1 cut(s) 842
BanII GRGCYC 1 cut(s) 705
BauI CACGAG 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 705
BbvI GCAGC 3 cut(s) 616, 1061, 1064
BccI CCATC 3 cut(s) 66, 790, 927
BcgI CGANNNNNNTGC 4 cut(s) 893, 927, 1175, 1209
BciT130I CCWGG 1 cut(s) 1046
BcoDI GTCTC 2 cut(s) 9, 780
BfaI CTAG 1 cut(s) 1113
BfmI CTRYAG 2 cut(s) 167, 902
BfrI CTTAAG 1 cut(s) 557
BglII AGATCT 1 cut(s) 163
BisI GCNGC 3 cut(s) 605, 1050, 1053
BlsI GCNGC 3 cut(s) 606, 1051, 1054
Bme1390I CCNGG 1 cut(s) 1046
BmeRI GACNNNNNGTC 1 cut(s) 772
BmrFI CCNGG 1 cut(s) 1046
BmrI ACTGGG 1 cut(s) 1245
BmsI GCATC 3 cut(s) 1108, 1313, 1336
BmuI ACTGGG 1 cut(s) 1245
BpiI GAAGAC 1 cut(s) 224
Bpu10I CCTNAGC 1 cut(s) 663
BpuEI CTTGAG 8 cut(s) 146, 200, 335, 365, 398, 515, 545, 590
BsaBI GATNNNNATC 1 cut(s) 937
BsaWI WCCGGW 1 cut(s) 705
Bsc4I CCNNNNNNNGG 2 cut(s) 933, 1257
Bse1I ACTGG 1 cut(s) 1251
Bse8I GATNNNNATC 1 cut(s) 937
BseAI TCCGGA 1 cut(s) 705
BseBI CCWGG 1 cut(s) 1046
BseGI GGATG 3 cut(s) 757, 938, 1099
BseJI GATNNNNATC 1 cut(s) 937
BseLI CCNNNNNNNGG 2 cut(s) 933, 1257
BseMII CTCAG 2 cut(s) 711, 791
BseNI ACTGG 1 cut(s) 1251
BseRI GAGGAG 4 cut(s) 647, 713, 770, 1372
BseXI GCAGC 3 cut(s) 616, 1061, 1064
Bsh1236I CGCG 1 cut(s) 609
BshFI GGCC 2 cut(s) 71, 842
BsiHKAI GWGCWC 1 cut(s) 705
BsiSI CCGG 1 cut(s) 706
BslI CCNNNNNNNGG 2 cut(s) 933, 1257
BsmAI GTCTC 2 cut(s) 9, 780
BsnI GGCC 2 cut(s) 71, 842
Bsp1286I GDGCHC 1 cut(s) 705
Bsp13I TCCGGA 1 cut(s) 705
Bsp1407I TGTACA 1 cut(s) 229
Bsp143I GATC 5 cut(s) 11, 121, 163, 714, 730
BspACI CCGC 1 cut(s) 242
BspANI GGCC 2 cut(s) 71, 842
BspCNI CTCAG 2 cut(s) 712, 790
BspEI TCCGGA 1 cut(s) 705
BspFNI CGCG 1 cut(s) 609
BspHI TCATGA 1 cut(s) 1370
BspMAI CTGCAG 2 cut(s) 171, 906
BspPI GGATC 2 cut(s) 129, 738
BspQI GCTCTTC 2 cut(s) 459, 828
BspTI CTTAAG 1 cut(s) 557
BsrGI TGTACA 1 cut(s) 229
BsrI ACTGG 1 cut(s) 1251
BssMI GATC 5 cut(s) 11, 121, 163, 714, 730
BssSI CACGAG 1 cut(s) 51
Bst2BI CACGAG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 1046
Bst6I CTCTTC 5 cut(s) 329, 459, 509, 786, 828
BstAFI CTTAAG 1 cut(s) 557
BstAPI GCANNNNNTGC 1 cut(s) 950
BstAUI TGTACA 1 cut(s) 229
BstC8I GCNNGC 3 cut(s) 840, 1009, 1097
BstDEI CTNAG 3 cut(s) 663, 720, 777
BstF5I GGATG 3 cut(s) 757, 938, 1099
BstFNI CGCG 1 cut(s) 609
BstHHI GCGC 1 cut(s) 609
BstKTI GATC 5 cut(s) 14, 124, 166, 717, 733
BstMAI GTCTC 2 cut(s) 9, 780
BstMBI GATC 5 cut(s) 11, 121, 163, 714, 730
BstMWI GCNNNNNNNGC 2 cut(s) 175, 950
BstNI CCWGG 1 cut(s) 1046
BstNSI RCATGY 3 cut(s) 250, 448, 1011
BstSCI CCNGG 1 cut(s) 1044
BstSFI CTRYAG 2 cut(s) 167, 902
BstUI CGCG 1 cut(s) 609
BstV1I GCAGC 3 cut(s) 616, 1061, 1064
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 2 cut(s) 121, 163
BstXI CCANNNNNNTGG 1 cut(s) 419
BstYI RGATCY 2 cut(s) 121, 163
BsuRI GGCC 2 cut(s) 71, 842
BtsCI GGATG 3 cut(s) 757, 938, 1099
BtsIMutI CAGTG 3 cut(s) 717, 894, 1258
Cac8I GCNNGC 3 cut(s) 840, 1009, 1097
CciI TCATGA 1 cut(s) 1370
CfoI GCGC 1 cut(s) 609
Csp6I GTAC 1 cut(s) 230
CviAII CATG 5 cut(s) 247, 445, 788, 1008, 1371
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 3 cut(s) 663, 720, 777
DpnI GATC 5 cut(s) 13, 123, 165, 716, 732
DpnII GATC 5 cut(s) 11, 121, 163, 714, 730
DriI GACNNNNNGTC 1 cut(s) 772
EaeI YGGCCR 1 cut(s) 840
Eam1104I CTCTTC 5 cut(s) 329, 459, 509, 786, 828
Eam1105I GACNNNNNGTC 1 cut(s) 772
EarI CTCTTC 5 cut(s) 329, 459, 509, 786, 828
EciI GGCGGA 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 703
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 705
Eco32I GATATC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 703
Eco57I CTGAAG 5 cut(s) 126, 194, 243, 1218, 1355
EcoICRI GAGCTC 1 cut(s) 703
EcoRII CCWGG 1 cut(s) 1044
EcoRV GATATC 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 705
FaeI CATG 5 cut(s) 250, 448, 791, 1011, 1374
FalI AAGNNNNNCTT 6 cut(s) 59, 91, 937, 969, 1109, 1141
FatI CATG 5 cut(s) 246, 444, 787, 1007, 1370
Fnu4HI GCNGC 3 cut(s) 605, 1050, 1053
FokI GGATG 3 cut(s) 764, 945, 1086
FriOI GRGCYC 1 cut(s) 705
Fsp4HI GCNGC 3 cut(s) 605, 1050, 1053
FspBI CTAG 1 cut(s) 1113
GlaI GCGC 1 cut(s) 608
GluI GCNGC 3 cut(s) 605, 1050, 1053
HaeIII GGCC 2 cut(s) 71, 842
HapII CCGG 1 cut(s) 706
HhaI GCGC 1 cut(s) 609
Hin1II CATG 5 cut(s) 250, 448, 791, 1011, 1374
Hin6I GCGC 1 cut(s) 607
HinP1I GCGC 1 cut(s) 607
HincII GTYRAC 1 cut(s) 1218
HindII GTYRAC 1 cut(s) 1218
HindIII AAGCTT 5 cut(s) 134, 176, 311, 491, 521
HinfI GANTC 9 cut(s) 301, 326, 481, 506, 739, 773, 938, 1088, 1121
HpaII CCGG 1 cut(s) 706
HphI GGTGA 2 cut(s) 401, 812
Hpy166II GTNNAC 3 cut(s) 191, 389, 1218
Hpy188I TCNGA 7 cut(s) 16, 32, 106, 291, 306, 486, 1002
Hpy8I GTNNAC 3 cut(s) 191, 389, 1218
HpyAV CCTTC 7 cut(s) 82, 101, 112, 364, 556, 652, 1293
HpyCH4V TGCA 8 cut(s) 40, 169, 904, 1007, 1011, 1265, 1327, 1351
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 950
HpyF3I CTNAG 3 cut(s) 663, 720, 777
Hsp92II CATG 5 cut(s) 250, 448, 791, 1011, 1374
HspAI GCGC 1 cut(s) 607
Kpn2I TCCGGA 1 cut(s) 705
Kzo9I GATC 5 cut(s) 11, 121, 163, 714, 730
LguI GCTCTTC 2 cut(s) 459, 828
LmnI GCTCC 4 cut(s) 79, 700, 708, 880
Lsp1109I GCAGC 3 cut(s) 616, 1061, 1064
LweI GCATC 3 cut(s) 1108, 1313, 1336
MaeI CTAG 1 cut(s) 1113
MaeIII GTNAC 1 cut(s) 53
MalI GATC 5 cut(s) 13, 123, 165, 716, 732
MboI GATC 5 cut(s) 11, 121, 163, 714, 730
MflI RGATCY 2 cut(s) 121, 163
MhlI GDGCHC 1 cut(s) 705
MlsI TGGCCA 1 cut(s) 842
MluCI AATT 5 cut(s) 617, 670, 804, 1166, 1232
MluNI TGGCCA 1 cut(s) 842
MlyI GAGTC 1 cut(s) 782
MmeI TCCRAC 1 cut(s) 705
Mox20I TGGCCA 1 cut(s) 842
MroI TCCGGA 1 cut(s) 705
MscI TGGCCA 1 cut(s) 842
Msp20I TGGCCA 1 cut(s) 842
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 1 cut(s) 706
MspR9I CCNGG 1 cut(s) 1046
MvaI CCWGG 1 cut(s) 1046
MvnI CGCG 1 cut(s) 609
MwoI GCNNNNNNNGC 2 cut(s) 175, 950
NdeII GATC 5 cut(s) 11, 121, 163, 714, 730
NlaIII CATG 5 cut(s) 250, 448, 791, 1011, 1374
NmuCI GTSAC 1 cut(s) 53
NspI RCATGY 3 cut(s) 250, 448, 1011
PaeI GCATGC 1 cut(s) 1011
PagI TCATGA 1 cut(s) 1370
PceI AGGCCT 1 cut(s) 71
PciI ACATGT 2 cut(s) 246, 444
PciSI GCTCTTC 2 cut(s) 459, 828
PfeI GAWTC 8 cut(s) 301, 326, 481, 506, 739, 938, 1088, 1121
PflMI CCANNNNNTGG 1 cut(s) 933
PkrI GCNGC 3 cut(s) 606, 1051, 1054
PleI GAGTC 1 cut(s) 781
PpsI GAGTC 1 cut(s) 781
PscI ACATGT 2 cut(s) 246, 444
Psp124BI GAGCTC 1 cut(s) 705
Psp6I CCWGG 1 cut(s) 1044
PspGI CCWGG 1 cut(s) 1044
PstI CTGCAG 2 cut(s) 171, 906
PsuI RGATCY 2 cut(s) 121, 163
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
SacI GAGCTC 1 cut(s) 705
SapI GCTCTTC 2 cut(s) 459, 828
SatI GCNGC 3 cut(s) 605, 1050, 1053
Sau3AI GATC 5 cut(s) 11, 121, 163, 714, 730
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 1 cut(s) 1046
SduI GDGCHC 1 cut(s) 705
SfaNI GCATC 3 cut(s) 1108, 1313, 1336
SfcI CTRYAG 2 cut(s) 167, 902
SmlI CTYRAG 9 cut(s) 125, 179, 314, 344, 377, 494, 524, 557, 569
SmoI CTYRAG 9 cut(s) 125, 179, 314, 344, 377, 494, 524, 557, 569
SphI GCATGC 1 cut(s) 1011
Sse9I AATT 5 cut(s) 617, 670, 804, 1166, 1232
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 1 cut(s) 242
SspI AATATT 2 cut(s) 646, 1323
SspMI CTAG 1 cut(s) 1113
SstI GAGCTC 1 cut(s) 705
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 1044
TaqI TCGA 1 cut(s) 808
TasI AATT 5 cut(s) 617, 670, 804, 1166, 1232
TatI WGTACW 1 cut(s) 229
TfiI GAWTC 8 cut(s) 301, 326, 481, 506, 739, 938, 1088, 1121
TscAI CASTG 3 cut(s) 724, 901, 1258
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 3 cut(s) 604, 1049, 1052
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 8 cut(s) 308, 441, 488, 629, 804, 1167, 1176, 1193
TspGWI ACGGA 1 cut(s) 1100
TspRI CASTG 3 cut(s) 724, 901, 1258
Van91I CCANNNNNTGG 1 cut(s) 933
Vha464I CTTAAG 1 cut(s) 557
XapI RAATTY 2 cut(s) 670, 804
XceI RCATGY 3 cut(s) 250, 448, 1011
XspI CTAG 1 cut(s) 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.