RLG00000019361

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000340
Physical Location & Seq
Forward (+)
50830462 .. 50833781
3320 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019361

Sequence Viewer

Length: 1245 bp
ATGCTTACCTCTAAGAAAGAAGCCGAGTGCTGTGCTGCTGGGTTGGCCTTGGATTACTTCGATGAAAACCCACAACCACCCCAGCCCAAACGCACCAAGTGTTTCTCTTTCCCGGCTCAGCCATCTCATATAGCCTCACTTCCTCCACCTTCATCACCAGGTTCGCTGTATCTCACATACAAGGAGAAAGAGATATGGAATGAGACAACTAGCATAGAGGGAAAGAAGGACACTTATGAACTGGAGCTAATGTTGGCAGAAGAGAGAAAGCTATGGCAGAGAGAAAAGCATCAGCTTCAACTAAAGAACATTGAATTGGAGAATCAGATTGATATGAAAAAGAATGAGCTGGAGCACTGTCGCAAGGAGCTACAGCATATGAATGAGAGAGCAGAATCAGAGCAGAAGAAGGCAGAAAATCTAATAGCGCTGGCAGAAAAGAGAAAGAGAGAAAATGAGAAGCTTCACTTAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAAGGAGCAGGAGCTTACTGATCTGTCAGAATTTTACAATGCACTAATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCAGGGGCCCGGACTGAAAAATCATTCAAAAATCTATATTGGCGTGAAGACATTGGGTGATCTTGACTTGAAGGCATTTCAAGTTGCAGCCAAGAGAAGATATACTGCAATAGAAGAAGCAAATGAGAGGGCAGTGGAGTTGTGCTCTGTGTGGGAGGATTATGTTGGGGATTCTAATTGGAACCCATACAAGGTTATTATGGATGAGACAGGAAAAAGAATGGAAATTATTGATGAAGAAGATAAAAAATTGAAAAATTTGAAGACTGAGCTGGGGGATGAAGTATACAAGGTGGTGACAACTTCGTTAATGGAATTGAATGAACATAATTCCAGTGGGAGGTATAGGATACAAGAGCTTTGGAATTTTAAAGCAGGGAGGAAGGCAACACTTAAAGAGGGAGTTGCTTACATTCTAAAGCAATGGAACGCACTTAAAGAACACGAAGCGGAGAAGAAACTAAAAGTTAAAGGGTTTTCATCTGAAGAGTTTGCTGCTCATAATGAGTTGTTTGAAGGCTTGTTTACAAAAAAAGAAAGAAAGACAAAACTGGAAGAAACCAACGACTTGTATTTGCTGGTGACTCAATTGGAAGGAACCAGTGAGAGTCTTTTCTACGCAAGCTCTCCACTTAAACAGAAGGATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

415

Amino Acids

48.11

Weight (kDa)

5.73

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 214 - 345 5.1e-50 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 879
AciI CCGC 1 cut(s) 1043
AcsI RAATTY 3 cut(s) 545, 850, 958
AcuI CTGAAG 1 cut(s) 1098
AdeI CACNNNGTG 1 cut(s) 99
AfeI AGCGCT 1 cut(s) 429
AfiI CCNNNNNNNGG 2 cut(s) 784, 933
AjnI CCWGG 1 cut(s) 157
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
Alw21I GWGCWC 2 cut(s) 357, 740
Alw26I GTCTC 2 cut(s) 197, 794
Aor51HI AGCGCT 1 cut(s) 429
AoxI GGCC 2 cut(s) 45, 599
ApaI GGGCCC 1 cut(s) 603
ApeKI GCWGC 4 cut(s) 35, 592, 680, 1088
ApoI RAATTY 3 cut(s) 545, 850, 958
AspLEI GCGC 1 cut(s) 430
AspS9I GGNCC 2 cut(s) 599, 600
AsuC2I CCSGG 2 cut(s) 113, 603
AsuHPI GGTGA 4 cut(s) 147, 662, 901, 1186
BaeGI GKGCMC 1 cut(s) 603
BanII GRGCYC 1 cut(s) 603
BbsI GAAGAC 2 cut(s) 647, 863
Bbv12I GWGCWC 2 cut(s) 357, 740
BbvI GCAGC 4 cut(s) 22, 579, 692, 1075
BccI CCATC 1 cut(s) 130
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciT130I CCWGG 1 cut(s) 159
BciVI GTATCC 1 cut(s) 936
BcnI CCSGG 2 cut(s) 113, 603
BcoDI GTCTC 2 cut(s) 197, 794
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 2 cut(s) 371, 593
BfoI RGCGCY 1 cut(s) 431
BfuI GTATCC 1 cut(s) 936
BglI GCCNNNNNGGC 1 cut(s) 509
BisI GCNGC 4 cut(s) 36, 593, 681, 1089
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 4 cut(s) 37, 594, 682, 1090
Bme1390I CCNGG 3 cut(s) 113, 159, 603
BmgT120I GGNCC 2 cut(s) 599, 600
BmiI GGNNCC 4 cut(s) 600, 601, 776, 1192
BmrFI CCNGG 3 cut(s) 113, 159, 603
BmsI GCATC 1 cut(s) 298
BpiI GAAGAC 2 cut(s) 647, 863
BplI GAGNNNNNCTC 2 cut(s) 722, 754
BpmI CTGGAG 2 cut(s) 263, 371
Bpu1102I GCTNAGC 1 cut(s) 117
BpuMI CCSGG 2 cut(s) 113, 603
BsaJI CCNNGG 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 2 cut(s) 784, 933
Bse1I ACTGG 4 cut(s) 246, 927, 1149, 1194
Bse3DI GCAATG 1 cut(s) 1022
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 2 cut(s) 802, 877
BseLI CCNNNNNNNGG 2 cut(s) 784, 933
BseMI GCAATG 1 cut(s) 1022
BseMII CTCAG 2 cut(s) 131, 852
BseNI ACTGG 4 cut(s) 246, 927, 1149, 1194
BseRI GAGGAG 1 cut(s) 589
BseSI GKGCMC 1 cut(s) 603
BseXI GCAGC 4 cut(s) 22, 579, 692, 1075
BseYI CCCAGC 3 cut(s) 38, 81, 865
BshFI GGCC 2 cut(s) 47, 601
BsiHKAI GWGCWC 2 cut(s) 357, 740
BsiSI CCGG 2 cut(s) 113, 603
BslI CCNNNNNNNGG 2 cut(s) 784, 933
BsmAI GTCTC 2 cut(s) 197, 794
BsnI GGCC 2 cut(s) 47, 601
Bsp120I GGGCCC 1 cut(s) 599
Bsp1286I GDGCHC 3 cut(s) 357, 603, 740
Bsp143I GATC 2 cut(s) 535, 652
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 1 cut(s) 1043
BspANI GGCC 2 cut(s) 47, 601
BspCNI CTCAG 2 cut(s) 130, 853
BspLI GGNNCC 4 cut(s) 600, 601, 776, 1192
BspMAI CTGCAG 1 cut(s) 597
BsrDI GCAATG 1 cut(s) 1022
BsrI ACTGG 4 cut(s) 246, 927, 1149, 1194
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 2 cut(s) 535, 652
BssNAI GTATAC 1 cut(s) 880
BssT1I CCWWGG 1 cut(s) 48
Bst1107I GTATAC 1 cut(s) 880
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 359
Bst6I CTCTTC 2 cut(s) 255, 1074
BstC8I GCNNGC 2 cut(s) 432, 1216
BstDEI CTNAG 4 cut(s) 12, 117, 469, 861
BstF5I GGATG 2 cut(s) 802, 877
BstH2I RGCGCY 1 cut(s) 431
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 2 cut(s) 538, 655
BstMAI GTCTC 2 cut(s) 197, 794
BstMBI GATC 2 cut(s) 535, 652
BstMWI GCNNNNNNNGC 3 cut(s) 44, 509, 598
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 3 cut(s) 111, 157, 601
BstSFI CTRYAG 2 cut(s) 371, 593
BstSLI GKGCMC 1 cut(s) 603
BstV1I GCAGC 4 cut(s) 22, 579, 692, 1075
BstV2I GAAGAC 2 cut(s) 647, 863
BstZ17I GTATAC 1 cut(s) 880
BsuI GTATCC 1 cut(s) 936
BsuRI GGCC 2 cut(s) 47, 601
BtsCI GGATG 2 cut(s) 802, 877
BtsI GCAGTG 2 cut(s) 519, 732
BtsIMutI CAGTG 5 cut(s) 355, 519, 732, 934, 1201
Cac8I GCNNGC 2 cut(s) 432, 1216
CfoI GCGC 1 cut(s) 430
Cfr13I GGNCC 2 cut(s) 599, 600
CsiI ACCWGGT 1 cut(s) 157
DdeI CTNAG 4 cut(s) 12, 117, 469, 861
DpnI GATC 2 cut(s) 537, 654
DpnII GATC 2 cut(s) 535, 652
DraI TTTAAA 1 cut(s) 964
DraIII CACNNNGTG 1 cut(s) 99
Eam1104I CTCTTC 2 cut(s) 255, 1074
EarI CTCTTC 2 cut(s) 255, 1074
Eco130I CCWWGG 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 603
Eco47III AGCGCT 1 cut(s) 429
Eco57I CTGAAG 1 cut(s) 1098
EcoO109I RGGNCCY 1 cut(s) 599
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 48
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FauNDI CATATG 1 cut(s) 378
FblI GTMKAC 1 cut(s) 879
Fnu4HI GCNGC 4 cut(s) 36, 593, 681, 1089
FokI GGATG 2 cut(s) 809, 884
FriOI GRGCYC 1 cut(s) 603
Fsp4HI GCNGC 4 cut(s) 36, 593, 681, 1089
FspBI CTAG 1 cut(s) 210
GlaI GCGC 1 cut(s) 429
GluI GCNGC 4 cut(s) 36, 593, 681, 1089
GsaI CCCAGC 3 cut(s) 42, 85, 869
GsuI CTGGAG 2 cut(s) 263, 371
HaeII RGCGCY 1 cut(s) 431
HaeIII GGCC 2 cut(s) 47, 601
HapII CCGG 2 cut(s) 113, 603
HhaI GCGC 1 cut(s) 430
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 5 cut(s) 322, 395, 764, 1177, 1201
HpaII CCGG 2 cut(s) 113, 603
HphI GGTGA 4 cut(s) 147, 662, 901, 1186
Hpy166II GTNNAC 2 cut(s) 880, 1119
Hpy188I TCNGA 4 cut(s) 327, 400, 544, 1078
Hpy188III TCNNGA 1 cut(s) 656
Hpy8I GTNNAC 2 cut(s) 880, 1119
HpyAV CCTTC 9 cut(s) 159, 220, 403, 511, 658, 970, 1103, 1181, 1228
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4V TGCA 4 cut(s) 557, 595, 680, 701
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 509, 598
HpyF3I CTNAG 4 cut(s) 12, 117, 469, 861
HspAI GCGC 1 cut(s) 428
Kzo9I GATC 2 cut(s) 535, 652
LmnI GCTCC 7 cut(s) 244, 352, 367, 501, 520, 526, 576
Lsp1109I GCAGC 4 cut(s) 22, 579, 692, 1075
LweI GCATC 1 cut(s) 298
MabI ACCWGGT 1 cut(s) 157
MaeI CTAG 1 cut(s) 210
MaeIII GTNAC 2 cut(s) 889, 1174
MalI GATC 2 cut(s) 537, 654
MboI GATC 2 cut(s) 535, 652
MfeI CAATTG 1 cut(s) 1181
MhlI GDGCHC 3 cut(s) 357, 603, 740
MlyI GAGTC 2 cut(s) 1171, 1210
MseI TTAA 6 cut(s) 902, 963, 987, 1029, 1062, 1227
MslI CAYNNNNRTG 1 cut(s) 381
MspI CCGG 2 cut(s) 113, 603
MspR9I CCNGG 3 cut(s) 113, 159, 603
MunI CAATTG 1 cut(s) 1181
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 3 cut(s) 44, 509, 598
NciI CCSGG 2 cut(s) 113, 603
NdeI CATATG 1 cut(s) 378
NdeII GATC 2 cut(s) 535, 652
NlaIV GGNNCC 4 cut(s) 600, 601, 776, 1192
NmeAIII GCCGAG 1 cut(s) 49
NmuCI GTSAC 2 cut(s) 889, 1174
PfeI GAWTC 3 cut(s) 322, 395, 764
PkrI GCNGC 4 cut(s) 37, 594, 682, 1090
PleI GAGTC 2 cut(s) 1171, 1209
PpsI GAGTC 2 cut(s) 1171, 1209
Psp6I CCWGG 1 cut(s) 157
PspFI CCCAGC 3 cut(s) 38, 81, 865
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 4 cut(s) 600, 601, 776, 1192
PspOMI GGGCCC 1 cut(s) 599
PspPI GGNCC 2 cut(s) 599, 600
PstI CTGCAG 1 cut(s) 597
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 6 cut(s) 902, 963, 987, 1029, 1062, 1227
SatI GCNGC 4 cut(s) 36, 593, 681, 1089
Sau3AI GATC 2 cut(s) 535, 652
Sau96I GGNCC 2 cut(s) 599, 600
SchI GAGTC 2 cut(s) 1171, 1210
ScrFI CCNGG 3 cut(s) 113, 159, 603
SduI GDGCHC 3 cut(s) 357, 603, 740
SexAI ACCWGGT 1 cut(s) 157
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 2 cut(s) 371, 593
SmiMI CAYNNNNRTG 1 cut(s) 381
SsiI CCGC 1 cut(s) 1043
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 3 cut(s) 111, 157, 601
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 359
TaqI TCGA 1 cut(s) 60
TfiI GAWTC 3 cut(s) 322, 395, 764
Tru1I TTAA 6 cut(s) 902, 963, 987, 1029, 1062, 1227
Tru9I TTAA 6 cut(s) 902, 963, 987, 1029, 1062, 1227
TscAI CASTG 5 cut(s) 362, 519, 732, 934, 1201
TseFI GTSAC 2 cut(s) 889, 1174
TseI GCWGC 4 cut(s) 35, 592, 680, 1088
Tsp45I GTSAC 2 cut(s) 889, 1174
TspDTI ATGAA 9 cut(s) 78, 141, 252, 350, 395, 843, 888, 930, 1062
TspRI CASTG 5 cut(s) 362, 519, 732, 934, 1201
XapI RAATTY 3 cut(s) 545, 850, 958
XmiI GTMKAC 1 cut(s) 879
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.