Rh5AG301300

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000340
Physical Location & Seq
Forward (+)
42334447 .. 42337328
2882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG301300.1

Sequence Viewer

Length: 882 bp
ATGTTGGCAGAAGAGAGAAAGCTATGGCAGAGAGAAAAGCATCAGCTTCAACTAAAGAACATTGAATTGGAGAATCAGATTGATATGAAAAAGAATGAGCTGGAGCACTGCCGCAAGGAGCTACAGCATATGAATGAGAGAGAAGAATCAGAGCAGAAGAAAGCAGAAAATCTGATAGCGCTTGCAGAAAAGAGAAAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAGGCCCAGAAGAATGTTAAAGCACTTGAACAAATGTTAAAGGAGAAGGAGCAGGAGCTTACTGATCTGTCAGAATTTTACAATGCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTACAGGGGGCCCGTAAAGAGTTAATTGATGGACTGAAAAATCATTCAAAAATCTATATTGGCGTGAAGACATTGGGTGATCTTGACTTGAAGGCATTTCAAGTTGCAGCCAAGAGAAGATATACTGCATTAGAAGAAGCAAATGAGAGGGCAGTGGAGTTGTGCTCTATGTGGGAGGATTATGTTGGGGATTCTAAATGGAACCCATACAAGGTTATTATGGATGAGACAGGAAAAAGAATGGAAATTATTGATGAAGAAGATAAAAAGTTGAAAAATTTGAAGACTGAGCTGGGGGATGAAGTATACAAGGTGGTGACTACTTCGTTAATGGAATTGAATGAACATAATTCCAGTGGGAGGTATAAGATACAAGAGCTTTGGAATTTTAAAGCAGGGAGGAAGGCAACACTTAAAGAGGGAGTTGCTTACATTCTAAAGCAATGGAACGTGCTTAAGAACACGAAGCGGCGAAGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

34.75

Weight (kDa)

6.66

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 156 - 287 3.6e-50 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 705
AciI CCGC 2 cut(s) 112, 868
AcsI RAATTY 3 cut(s) 353, 676, 784
AfeI AGCGCT 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 610, 759
AflII CTTAAG 1 cut(s) 854
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
Alw21I GWGCWC 2 cut(s) 108, 566
Alw26I GTCTC 1 cut(s) 620
Aor51HI AGCGCT 1 cut(s) 180
AoxI GGCC 2 cut(s) 282, 408
ApaI GGGCCC 1 cut(s) 412
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 3 cut(s) 353, 676, 784
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 3 cut(s) 283, 408, 409
AsuHPI GGTGA 2 cut(s) 488, 727
BaeGI GKGCMC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 412
BbsI GAAGAC 2 cut(s) 473, 689
Bbv12I GWGCWC 2 cut(s) 108, 566
BbvI GCAGC 1 cut(s) 518
BccI CCATC 1 cut(s) 422
BcoDI GTCTC 1 cut(s) 620
BfaI CTAG 1 cut(s) 880
BfmI CTRYAG 2 cut(s) 122, 401
BfoI RGCGCY 1 cut(s) 182
BfrI CTTAAG 1 cut(s) 854
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 3 cut(s) 112, 507, 869
BlsI GCNGC 3 cut(s) 113, 508, 870
BmgT120I GGNCC 3 cut(s) 283, 408, 409
BmiI GGNNCC 3 cut(s) 409, 410, 602
BmsI GCATC 1 cut(s) 49
BpiI GAAGAC 2 cut(s) 473, 689
BplI GAGNNNNNCTC 2 cut(s) 548, 580
BpmI CTGGAG 1 cut(s) 122
Bsc4I CCNNNNNNNGG 2 cut(s) 610, 759
Bse1I ACTGG 1 cut(s) 753
Bse3DI GCAATG 1 cut(s) 848
BseGI GGATG 2 cut(s) 628, 703
BseLI CCNNNNNNNGG 2 cut(s) 610, 759
BseMI GCAATG 1 cut(s) 848
BseMII CTCAG 2 cut(s) 234, 678
BseNI ACTGG 1 cut(s) 753
BseRI GAGGAG 1 cut(s) 397
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 1 cut(s) 518
BseYI CCCAGC 1 cut(s) 691
BshFI GGCC 2 cut(s) 284, 410
BsiHKAI GWGCWC 2 cut(s) 108, 566
BslI CCNNNNNNNGG 2 cut(s) 610, 759
BsmAI GTCTC 1 cut(s) 620
BsnI GGCC 2 cut(s) 284, 410
Bsp120I GGGCCC 1 cut(s) 408
Bsp1286I GDGCHC 3 cut(s) 108, 412, 566
Bsp143I GATC 2 cut(s) 343, 478
BspACI CCGC 2 cut(s) 112, 868
BspANI GGCC 2 cut(s) 284, 410
BspCNI CTCAG 2 cut(s) 233, 679
BspLI GGNNCC 3 cut(s) 409, 410, 602
BspTI CTTAAG 1 cut(s) 854
BsrDI GCAATG 1 cut(s) 848
BsrI ACTGG 1 cut(s) 753
BssMI GATC 2 cut(s) 343, 478
BssNAI GTATAC 1 cut(s) 706
Bst1107I GTATAC 1 cut(s) 706
Bst6I CTCTTC 1 cut(s) 6
BstAFI CTTAAG 1 cut(s) 854
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 220, 687
BstF5I GGATG 2 cut(s) 628, 703
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 2 cut(s) 346, 481
BstMAI GTCTC 1 cut(s) 620
BstMBI GATC 2 cut(s) 343, 478
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstSFI CTRYAG 2 cut(s) 122, 401
BstSLI GKGCMC 1 cut(s) 412
BstV1I GCAGC 1 cut(s) 518
BstV2I GAAGAC 2 cut(s) 473, 689
BstZ17I GTATAC 1 cut(s) 706
BsuRI GGCC 2 cut(s) 284, 410
BtsCI GGATG 2 cut(s) 628, 703
BtsI GCAGTG 3 cut(s) 106, 270, 558
BtsIMutI CAGTG 5 cut(s) 106, 270, 365, 558, 760
Cac8I GCNNGC 1 cut(s) 183
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 3 cut(s) 283, 408, 409
DdeI CTNAG 2 cut(s) 220, 687
DpnI GATC 2 cut(s) 345, 480
DpnII GATC 2 cut(s) 343, 478
DraI TTTAAA 1 cut(s) 790
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 412
Eco47III AGCGCT 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 412
FauNDI CATATG 1 cut(s) 129
FblI GTMKAC 1 cut(s) 705
Fnu4HI GCNGC 3 cut(s) 112, 507, 869
FokI GGATG 2 cut(s) 635, 710
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 3 cut(s) 112, 507, 869
FspBI CTAG 1 cut(s) 880
GlaI GCGC 1 cut(s) 180
GluI GCNGC 3 cut(s) 112, 507, 869
GsaI CCCAGC 1 cut(s) 695
GsuI CTGGAG 1 cut(s) 122
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 2 cut(s) 284, 410
HhaI GCGC 1 cut(s) 181
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 3 cut(s) 73, 146, 590
HphI GGTGA 2 cut(s) 488, 727
Hpy166II GTNNAC 1 cut(s) 706
Hpy188I TCNGA 5 cut(s) 78, 151, 174, 223, 352
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 1 cut(s) 706
HpyAV CCTTC 3 cut(s) 319, 484, 796
HpyCH4IV ACGT 1 cut(s) 849
HpyCH4V TGCA 4 cut(s) 185, 365, 506, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 2 cut(s) 220, 687
HpySE526I ACGT 1 cut(s) 849
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 2 cut(s) 343, 478
LmnI GCTCC 6 cut(s) 103, 118, 252, 328, 334, 384
Lsp1109I GCAGC 1 cut(s) 518
LweI GCATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 880
MaeII ACGT 1 cut(s) 849
MaeIII GTNAC 1 cut(s) 715
MalI GATC 2 cut(s) 345, 480
MboI GATC 2 cut(s) 343, 478
MhlI GDGCHC 3 cut(s) 108, 412, 566
MnlI CCTC 8 cut(s) 265, 274, 375, 540, 568, 753, 792, 811
MseI TTAA 7 cut(s) 297, 317, 422, 728, 789, 813, 855
MslI CAYNNNNRTG 1 cut(s) 132
MspCI CTTAAG 1 cut(s) 854
MwoI GCNNNNNNNGC 1 cut(s) 260
NdeI CATATG 1 cut(s) 129
NdeII GATC 2 cut(s) 343, 478
NlaIV GGNNCC 3 cut(s) 409, 410, 602
NmuCI GTSAC 1 cut(s) 715
PfeI GAWTC 3 cut(s) 73, 146, 590
PkrI GCNGC 3 cut(s) 113, 508, 870
PspFI CCCAGC 1 cut(s) 691
PspN4I GGNNCC 3 cut(s) 409, 410, 602
PspOMI GGGCCC 1 cut(s) 408
PspPI GGNCC 3 cut(s) 283, 408, 409
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 7 cut(s) 297, 317, 422, 728, 789, 813, 855
SatI GCNGC 3 cut(s) 112, 507, 869
Sau3AI GATC 2 cut(s) 343, 478
Sau96I GGNCC 3 cut(s) 283, 408, 409
SduI GDGCHC 3 cut(s) 108, 412, 566
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 2 cut(s) 122, 401
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 854
SmoI CTYRAG 1 cut(s) 854
SsiI CCGC 2 cut(s) 112, 868
SspMI CTAG 1 cut(s) 880
TaiI ACGT 1 cut(s) 852
TauI GCSGC 2 cut(s) 114, 871
TfiI GAWTC 3 cut(s) 73, 146, 590
Tru1I TTAA 7 cut(s) 297, 317, 422, 728, 789, 813, 855
Tru9I TTAA 7 cut(s) 297, 317, 422, 728, 789, 813, 855
TscAI CASTG 5 cut(s) 113, 270, 372, 558, 760
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 5 cut(s) 101, 146, 669, 714, 756
TspRI CASTG 5 cut(s) 113, 270, 372, 558, 760
Vha464I CTTAAG 1 cut(s) 854
XapI RAATTY 3 cut(s) 353, 676, 784
XmiI GTMKAC 1 cut(s) 705
XspI CTAG 1 cut(s) 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.