XH domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 48 |
| AccI | GTMKAC | 1 cut(s) | 1104 |
| AccII | CGCG | 1 cut(s) | 1250 |
| AciI | CCGC | 2 cut(s) | 511, 1267 |
| AcsI | RAATTY | 3 cut(s) | 752, 1075, 1183 |
| AcuI | CTGAAG | 2 cut(s) | 8, 1256 |
| AfaI | GTAC | 2 cut(s) | 65, 364 |
| AfeI | AGCGCT | 1 cut(s) | 579 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 48, 1009, 1158 |
| AflII | CTTAAG | 1 cut(s) | 1253 |
| AjnI | CCWGG | 1 cut(s) | 307 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 449, 481 |
| Alw21I | GWGCWC | 3 cut(s) | 120, 507, 965 |
| Alw26I | GTCTC | 2 cut(s) | 347, 1019 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 113 |
| Aor51HI | AGCGCT | 1 cut(s) | 579 |
| AoxI | GGCC | 4 cut(s) | 82, 195, 681, 807 |
| ApaI | GGGCCC | 1 cut(s) | 811 |
| ApeKI | GCWGC | 4 cut(s) | 69, 185, 799, 905 |
| ApoI | RAATTY | 3 cut(s) | 752, 1075, 1183 |
| AspLEI | GCGC | 2 cut(s) | 580, 1252 |
| AspS9I | GGNCC | 5 cut(s) | 51, 83, 682, 807, 808 |
| AsuC2I | CCSGG | 1 cut(s) | 263 |
| AsuHPI | GGTGA | 5 cut(s) | 83, 124, 297, 887, 1126 |
| AvaII | GGWCC | 1 cut(s) | 51 |
| BaeGI | GKGCMC | 1 cut(s) | 811 |
| BanII | GRGCYC | 1 cut(s) | 811 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 368, 400 |
| BbsI | GAAGAC | 2 cut(s) | 872, 1088 |
| Bbv12I | GWGCWC | 3 cut(s) | 120, 507, 965 |
| BbvI | GCAGC | 4 cut(s) | 81, 172, 786, 917 |
| BccI | CCATC | 1 cut(s) | 821 |
| BceAI | ACGGC | 1 cut(s) | 301 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 164, 198 |
| BciT130I | CCWGG | 1 cut(s) | 309 |
| BcnI | CCSGG | 1 cut(s) | 263 |
| BcoDI | GTCTC | 2 cut(s) | 347, 1019 |
| BfaI | CTAG | 1 cut(s) | 1279 |
| BfmI | CTRYAG | 2 cut(s) | 521, 800 |
| BfoI | RGCGCY | 1 cut(s) | 581 |
| BfrI | CTTAAG | 1 cut(s) | 1253 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 659 |
| BisI | GCNGC | 6 cut(s) | 70, 186, 511, 800, 906, 1268 |
| BlpI | GCTNAGC | 1 cut(s) | 267 |
| BlsI | GCNGC | 6 cut(s) | 71, 187, 512, 801, 907, 1269 |
| Bme1390I | CCNGG | 2 cut(s) | 263, 309 |
| Bme18I | GGWCC | 1 cut(s) | 51 |
| BmgT120I | GGNCC | 5 cut(s) | 51, 83, 682, 807, 808 |
| BmiI | GGNNCC | 3 cut(s) | 808, 809, 1001 |
| BmrFI | CCNGG | 2 cut(s) | 263, 309 |
| BmsI | GCATC | 1 cut(s) | 448 |
| BpiI | GAAGAC | 2 cut(s) | 872, 1088 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 947, 979 |
| BpmI | CTGGAG | 2 cut(s) | 413, 521 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 267 |
| BpuMI | CCSGG | 1 cut(s) | 263 |
| BsaJI | CCNNGG | 2 cut(s) | 124, 198 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 386, 416 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 48, 1009, 1158 |
| Bse1I | ACTGG | 2 cut(s) | 396, 1152 |
| Bse3DI | GCAATG | 1 cut(s) | 1247 |
| BseBI | CCWGG | 1 cut(s) | 309 |
| BseDI | CCNNGG | 2 cut(s) | 124, 198 |
| BseGI | GGATG | 2 cut(s) | 1027, 1102 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 48, 1009, 1158 |
| BseMI | GCAATG | 1 cut(s) | 1247 |
| BseMII | CTCAG | 4 cut(s) | 120, 281, 633, 1077 |
| BseNI | ACTGG | 2 cut(s) | 396, 1152 |
| BseRI | GAGGAG | 1 cut(s) | 796 |
| BseSI | GKGCMC | 1 cut(s) | 811 |
| BseXI | GCAGC | 4 cut(s) | 81, 172, 786, 917 |
| BseYI | CCCAGC | 3 cut(s) | 188, 231, 1090 |
| Bsh1236I | CGCG | 1 cut(s) | 1250 |
| BshFI | GGCC | 4 cut(s) | 84, 197, 683, 809 |
| BsiHKAI | GWGCWC | 3 cut(s) | 120, 507, 965 |
| BsiSI | CCGG | 1 cut(s) | 263 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 48, 1009, 1158 |
| BsmAI | GTCTC | 2 cut(s) | 347, 1019 |
| BsnI | GGCC | 4 cut(s) | 84, 197, 683, 809 |
| Bsp120I | GGGCCC | 1 cut(s) | 807 |
| Bsp1286I | GDGCHC | 4 cut(s) | 120, 507, 811, 965 |
| Bsp1407I | TGTACA | 1 cut(s) | 362 |
| Bsp143I | GATC | 2 cut(s) | 742, 877 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 267 |
| Bsp19I | CCATGG | 1 cut(s) | 124 |
| BspACI | CCGC | 2 cut(s) | 511, 1267 |
| BspANI | GGCC | 4 cut(s) | 84, 197, 683, 809 |
| BspCNI | CTCAG | 4 cut(s) | 119, 280, 632, 1078 |
| BspFNI | CGCG | 1 cut(s) | 1250 |
| BspLI | GGNNCC | 3 cut(s) | 808, 809, 1001 |
| BspMAI | CTGCAG | 1 cut(s) | 804 |
| BspTI | CTTAAG | 1 cut(s) | 1253 |
| BsrDI | GCAATG | 1 cut(s) | 1247 |
| BsrGI | TGTACA | 1 cut(s) | 362 |
| BsrI | ACTGG | 2 cut(s) | 396, 1152 |
| BssECI | CCNNGG | 2 cut(s) | 124, 198 |
| BssMI | GATC | 2 cut(s) | 742, 877 |
| BssNAI | GTATAC | 1 cut(s) | 1105 |
| BssT1I | CCWWGG | 2 cut(s) | 124, 198 |
| Bst1107I | GTATAC | 1 cut(s) | 1105 |
| Bst2UI | CCWGG | 1 cut(s) | 309 |
| Bst6I | CTCTTC | 1 cut(s) | 405 |
| BstAFI | CTTAAG | 1 cut(s) | 1253 |
| BstAUI | TGTACA | 1 cut(s) | 362 |
| BstC8I | GCNNGC | 1 cut(s) | 582 |
| BstDEI | CTNAG | 5 cut(s) | 106, 162, 267, 619, 1086 |
| BstDSI | CCRYGG | 1 cut(s) | 124 |
| BstF5I | GGATG | 2 cut(s) | 1027, 1102 |
| BstFNI | CGCG | 1 cut(s) | 1250 |
| BstH2I | RGCGCY | 1 cut(s) | 581 |
| BstHHI | GCGC | 2 cut(s) | 580, 1252 |
| BstKTI | GATC | 2 cut(s) | 745, 880 |
| BstMAI | GTCTC | 2 cut(s) | 347, 1019 |
| BstMBI | GATC | 2 cut(s) | 742, 877 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 194, 659 |
| BstNI | CCWGG | 1 cut(s) | 309 |
| BstSCI | CCNGG | 2 cut(s) | 261, 307 |
| BstSFI | CTRYAG | 2 cut(s) | 521, 800 |
| BstSLI | GKGCMC | 1 cut(s) | 811 |
| BstUI | CGCG | 1 cut(s) | 1250 |
| BstV1I | GCAGC | 4 cut(s) | 81, 172, 786, 917 |
| BstV2I | GAAGAC | 2 cut(s) | 872, 1088 |
| BstZ17I | GTATAC | 1 cut(s) | 1105 |
| BsuRI | GGCC | 4 cut(s) | 84, 197, 683, 809 |
| BtgI | CCRYGG | 1 cut(s) | 124 |
| BtsCI | GGATG | 2 cut(s) | 1027, 1102 |
| BtsI | GCAGTG | 3 cut(s) | 505, 669, 957 |
| BtsIMutI | CAGTG | 5 cut(s) | 505, 669, 764, 957, 1159 |
| Cac8I | GCNNGC | 1 cut(s) | 582 |
| CaiI | CAGNNNCTG | 1 cut(s) | 113 |
| CfoI | GCGC | 2 cut(s) | 580, 1252 |
| Cfr13I | GGNCC | 5 cut(s) | 51, 83, 682, 807, 808 |
| CsiI | ACCWGGT | 1 cut(s) | 307 |
| Csp6I | GTAC | 2 cut(s) | 64, 363 |
| CviAII | CATG | 1 cut(s) | 125 |
| CviQI | GTAC | 2 cut(s) | 64, 363 |
| DdeI | CTNAG | 5 cut(s) | 106, 162, 267, 619, 1086 |
| DpnI | GATC | 2 cut(s) | 744, 879 |
| DpnII | GATC | 2 cut(s) | 742, 877 |
| DraI | TTTAAA | 1 cut(s) | 1189 |
| Eam1104I | CTCTTC | 1 cut(s) | 405 |
| EarI | CTCTTC | 1 cut(s) | 405 |
| Eco130I | CCWWGG | 2 cut(s) | 124, 198 |
| Eco24I | GRGCYC | 1 cut(s) | 811 |
| Eco47I | GGWCC | 1 cut(s) | 51 |
| Eco47III | AGCGCT | 1 cut(s) | 579 |
| Eco57I | CTGAAG | 2 cut(s) | 8, 1256 |
| EcoO109I | RGGNCCY | 1 cut(s) | 807 |
| EcoRII | CCWGG | 1 cut(s) | 307 |
| EcoT14I | CCWWGG | 2 cut(s) | 124, 198 |
| EcoT38I | GRGCYC | 1 cut(s) | 811 |
| ErhI | CCWWGG | 2 cut(s) | 124, 198 |
| FaeI | CATG | 1 cut(s) | 128 |
| FatI | CATG | 1 cut(s) | 124 |
| FauNDI | CATATG | 1 cut(s) | 528 |
| FblI | GTMKAC | 1 cut(s) | 1104 |
| Fnu4HI | GCNGC | 6 cut(s) | 70, 186, 511, 800, 906, 1268 |
| FokI | GGATG | 2 cut(s) | 1034, 1109 |
| FriOI | GRGCYC | 1 cut(s) | 811 |
| Fsp4HI | GCNGC | 6 cut(s) | 70, 186, 511, 800, 906, 1268 |
| FspBI | CTAG | 1 cut(s) | 1279 |
| GlaI | GCGC | 2 cut(s) | 579, 1251 |
| GluI | GCNGC | 6 cut(s) | 70, 186, 511, 800, 906, 1268 |
| GsaI | CCCAGC | 3 cut(s) | 192, 235, 1094 |
| GsuI | CTGGAG | 2 cut(s) | 413, 521 |
| HaeII | RGCGCY | 1 cut(s) | 581 |
| HaeIII | GGCC | 4 cut(s) | 84, 197, 683, 809 |
| HapII | CCGG | 1 cut(s) | 263 |
| HhaI | GCGC | 2 cut(s) | 580, 1252 |
| Hin1II | CATG | 1 cut(s) | 128 |
| Hin6I | GCGC | 2 cut(s) | 578, 1250 |
| HinP1I | GCGC | 2 cut(s) | 578, 1250 |
| HindIII | AAGCTT | 2 cut(s) | 20, 611 |
| HinfI | GANTC | 3 cut(s) | 472, 545, 989 |
| HpaII | CCGG | 1 cut(s) | 263 |
| HphI | GGTGA | 5 cut(s) | 83, 124, 297, 887, 1126 |
| Hpy166II | GTNNAC | 1 cut(s) | 1105 |
| Hpy188I | TCNGA | 6 cut(s) | 477, 550, 573, 622, 751, 1236 |
| Hpy188III | TCNNGA | 2 cut(s) | 26, 881 |
| Hpy8I | GTNNAC | 1 cut(s) | 1105 |
| HpyAV | CCTTC | 8 cut(s) | 64, 145, 282, 294, 309, 370, 883, 1195 |
| HpyCH4V | TGCA | 4 cut(s) | 764, 802, 905, 926 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 194, 659 |
| HpyF3I | CTNAG | 5 cut(s) | 106, 162, 267, 619, 1086 |
| Hsp92II | CATG | 1 cut(s) | 128 |
| HspAI | GCGC | 2 cut(s) | 578, 1250 |
| Kzo9I | GATC | 2 cut(s) | 742, 877 |
| LmnI | GCTCC | 6 cut(s) | 394, 502, 517, 651, 733, 783 |
| Lsp1109I | GCAGC | 4 cut(s) | 81, 172, 786, 917 |
| LweI | GCATC | 1 cut(s) | 448 |
| MabI | ACCWGGT | 1 cut(s) | 307 |
| MaeI | CTAG | 1 cut(s) | 1279 |
| MaeIII | GTNAC | 1 cut(s) | 1114 |
| MalI | GATC | 2 cut(s) | 744, 879 |
| MboI | GATC | 2 cut(s) | 742, 877 |
| MboII | GAAGA | 8 cut(s) | 422, 568, 700, 877, 927, 944, 1070, 1093 |
| MhlI | GDGCHC | 4 cut(s) | 120, 507, 811, 965 |
| MmeI | TCCRAC | 1 cut(s) | 29 |
| MseI | TTAA | 8 cut(s) | 696, 716, 774, 821, 1127, 1188, 1212, 1254 |
| MslI | CAYNNNNRTG | 1 cut(s) | 531 |
| MspCI | CTTAAG | 1 cut(s) | 1253 |
| MspI | CCGG | 1 cut(s) | 263 |
| MspR9I | CCNGG | 2 cut(s) | 263, 309 |
| MvaI | CCWGG | 1 cut(s) | 309 |
| MvnI | CGCG | 1 cut(s) | 1250 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 194, 659 |
| NciI | CCSGG | 1 cut(s) | 263 |
| NcoI | CCATGG | 1 cut(s) | 124 |
| NdeI | CATATG | 1 cut(s) | 528 |
| NdeII | GATC | 2 cut(s) | 742, 877 |
| NlaIII | CATG | 1 cut(s) | 128 |
| NlaIV | GGNNCC | 3 cut(s) | 808, 809, 1001 |
| NmeAIII | GCCGAG | 1 cut(s) | 199 |
| NmuCI | GTSAC | 1 cut(s) | 1114 |
| PfeI | GAWTC | 3 cut(s) | 472, 545, 989 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 48 |
| PkrI | GCNGC | 6 cut(s) | 71, 187, 512, 801, 907, 1269 |
| Psp6I | CCWGG | 1 cut(s) | 307 |
| PspFI | CCCAGC | 3 cut(s) | 188, 231, 1090 |
| PspGI | CCWGG | 1 cut(s) | 307 |
| PspN4I | GGNNCC | 3 cut(s) | 808, 809, 1001 |
| PspOMI | GGGCCC | 1 cut(s) | 807 |
| PspPI | GGNCC | 5 cut(s) | 51, 83, 682, 807, 808 |
| PstI | CTGCAG | 1 cut(s) | 804 |
| PstNI | CAGNNNCTG | 1 cut(s) | 113 |
| RsaI | GTAC | 2 cut(s) | 65, 364 |
| RsaNI | GTAC | 2 cut(s) | 64, 363 |
| RseI | CAYNNNNRTG | 1 cut(s) | 531 |
| SaqAI | TTAA | 8 cut(s) | 696, 716, 774, 821, 1127, 1188, 1212, 1254 |
| SatI | GCNGC | 6 cut(s) | 70, 186, 511, 800, 906, 1268 |
| Sau3AI | GATC | 2 cut(s) | 742, 877 |
| Sau96I | GGNCC | 5 cut(s) | 51, 83, 682, 807, 808 |
| ScrFI | CCNGG | 2 cut(s) | 263, 309 |
| SduI | GDGCHC | 4 cut(s) | 120, 507, 811, 965 |
| SexAI | ACCWGGT | 1 cut(s) | 307 |
| SfaNI | GCATC | 1 cut(s) | 448 |
| SfcI | CTRYAG | 2 cut(s) | 521, 800 |
| SinI | GGWCC | 1 cut(s) | 51 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 531 |
| SmlI | CTYRAG | 1 cut(s) | 1253 |
| SmoI | CTYRAG | 1 cut(s) | 1253 |
| SsiI | CCGC | 2 cut(s) | 511, 1267 |
| SspI | AATATT | 1 cut(s) | 694 |
| SspMI | CTAG | 1 cut(s) | 1279 |
| StyD4I | CCNGG | 2 cut(s) | 261, 307 |
| StyI | CCWWGG | 2 cut(s) | 124, 198 |
| TaqI | TCGA | 1 cut(s) | 210 |
| TatI | WGTACW | 2 cut(s) | 63, 362 |
| TauI | GCSGC | 2 cut(s) | 513, 1270 |
| TfiI | GAWTC | 3 cut(s) | 472, 545, 989 |
| Tru1I | TTAA | 8 cut(s) | 696, 716, 774, 821, 1127, 1188, 1212, 1254 |
| Tru9I | TTAA | 8 cut(s) | 696, 716, 774, 821, 1127, 1188, 1212, 1254 |
| TscAI | CASTG | 5 cut(s) | 512, 669, 771, 957, 1159 |
| TseFI | GTSAC | 1 cut(s) | 1114 |
| TseI | GCWGC | 4 cut(s) | 69, 185, 799, 905 |
| Tsp45I | GTSAC | 1 cut(s) | 1114 |
| TspDTI | ATGAA | 7 cut(s) | 17, 228, 291, 500, 545, 1113, 1155 |
| TspRI | CASTG | 5 cut(s) | 512, 669, 771, 957, 1159 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 48 |
| Vha464I | CTTAAG | 1 cut(s) | 1253 |
| VpaK11BI | GGWCC | 1 cut(s) | 51 |
| XapI | RAATTY | 3 cut(s) | 752, 1075, 1183 |
| XmiI | GTMKAC | 1 cut(s) | 1104 |
| XspI | CTAG | 1 cut(s) | 1279 |