Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000340

Physical Location & Seq

Genomic Coordinates Forward (+)

49582256 .. 49582552

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0369900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGAACCACGAACTCTGCAACTGATGGAGCTACAAACCCCGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTTCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

98

Amino Acids

11.51

Weight (kDa)

6.82

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	38 - 98	1.3e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica	Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis	pycom01g15630
rosa_chinensis	RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata	RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora	Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii	Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa	Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha	Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana	Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	3 cut(s)	142, 155, 165
AcuI	CTGAAG	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	2 cut(s)	31, 223
AluI	AGCT	2 cut(s)	31, 223
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	3 cut(s)	142, 155, 165
Ama87I	CYCGRG	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	74
AsuC2I	CCSGG	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	188
BamHI	GGATCC	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	286
BauI	CACGAG	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	2 cut(s)	19, 50
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	79, 118
BmeT110I	CYCGRG	1 cut(s)	285
BmiI	GGNNCC	4 cut(s)	6, 126, 149, 269
BmrFI	CCNGG	2 cut(s)	79, 118
BpmI	CTGGAG	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	229
BseSI	GKGCMC	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	221
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	3 cut(s)	188, 201, 286
Bsp143I	GATC	4 cut(s)	136, 147, 157, 210
BspACI	CCGC	1 cut(s)	41
BspLI	GGNNCC	4 cut(s)	6, 126, 149, 269
BspPI	GGATC	3 cut(s)	142, 155, 165
BsrI	ACTGG	1 cut(s)	229
BssMI	GATC	4 cut(s)	136, 147, 157, 210
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	4 cut(s)	139, 150, 160, 213
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	4 cut(s)	136, 147, 157, 210
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	77, 116
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	86
BstX2I	RGATCY	3 cut(s)	147, 157, 210
BstYI	RGATCY	3 cut(s)	147, 157, 210
BtsCI	GGATG	1 cut(s)	61
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	5 cut(s)	31, 77, 111, 223, 284
CviKI_1	RGCY	5 cut(s)	31, 77, 111, 223, 284
DpnI	GATC	4 cut(s)	138, 149, 159, 212
DpnII	GATC	4 cut(s)	136, 147, 157, 210
Eco24I	GRGCYC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	286
FaeI	CATG	1 cut(s)	242
FaiI	YATR	2 cut(s)	234, 240
FatI	CATG	1 cut(s)	238
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	203
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	1 cut(s)	242
HpaII	CCGG	1 cut(s)	78
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	3 cut(s)	206, 271, 287
HpyCH4V	TGCA	1 cut(s)	19
Hsp92II	CATG	1 cut(s)	242
Kzo9I	GATC	4 cut(s)	136, 147, 157, 210
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	8 cut(s)	88, 91, 103, 130, 233, 242, 265, 284
Lsp1109I	GCAGC	1 cut(s)	86
MalI	GATC	4 cut(s)	138, 149, 159, 212
MboI	GATC	4 cut(s)	136, 147, 157, 210
MflI	RGATCY	3 cut(s)	147, 157, 210
MhlI	GDGCHC	3 cut(s)	188, 201, 286
MnlI	CCTC	4 cut(s)	46, 53, 161, 238
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	2 cut(s)	79, 118
MvaI	CCWGG	1 cut(s)	118
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	4 cut(s)	136, 147, 157, 210
NlaIII	CATG	1 cut(s)	242
NlaIV	GGNNCC	4 cut(s)	6, 126, 149, 269
NspI	RCATGY	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	285
PciI	ACATGT	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	76
PscI	ACATGT	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	4 cut(s)	6, 126, 149, 269
PsuI	RGATCY	3 cut(s)	147, 157, 210
PvuII	CAGCTG	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	4 cut(s)	136, 147, 157, 210
ScrFI	CCNGG	2 cut(s)	79, 118
SduI	GDGCHC	3 cut(s)	188, 201, 286
SetI	ASST	3 cut(s)	33, 122, 225
SfcI	CTRYAG	1 cut(s)	192
Sfr274I	CTCGAG	1 cut(s)	285
SlaI	CTCGAG	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	152, 285
SmoI	CTYRAG	2 cut(s)	152, 285
SsiI	CCGC	1 cut(s)	41
StyD4I	CCNGG	2 cut(s)	77, 116
TaqI	TCGA	2 cut(s)	51, 286
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseI	GCWGC	1 cut(s)	74
XceI	RCATGY	1 cut(s)	242
XhoI	CTCGAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.