Rh5CG335700

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000340
Physical Location & Seq
Forward (+)
38071508 .. 38072884
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG335700.1

Sequence Viewer

Length: 426 bp
ATGAACTTGAACAAATCCAAGCTTCAGGAGATGTGCCAAGCCAGAGGTTGGACCTTCCCCAAGTACAGCAGCAACCAGCAAGGCCCACCTCACCGACCTCGCTTCTCAGCCTCTGTGCTCGTCCATGGCTTCACCTTCAACACTAAAACTATGCTGACCTCTAAGAAAGAAGCCGAGTGCTGTGCTGCTGGGTTGGCCTTGGCTTACTTCGATGAAAACCCACAACCACCCCAGCCCAAACGCCCCAAGTGTTTCTCTTTCCCGGCTCAGCCTTCTCATATACCTTCACTTCCTCCACCTTCATCACCAGGTTTGCTGTATCTCACATACAAGGAGAAAGAGATATGGATTCCCAGAGGCGTTCCCTTCAGATCAGAGCATCATCTTCGGAAGAGACATCCACTTCTGTTTACACTGGTGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.09

Weight (kDa)

9.87

Isoelectric Point (pI)

65.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 5 - 69 2.9e-12 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 48
AcuI CTGAAG 2 cut(s) 8, 352
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 2 cut(s) 10, 139
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 388
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 2 cut(s) 82, 195
ApeKI GCWGC 2 cut(s) 69, 185
AspS9I GGNCC 2 cut(s) 51, 83
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 3 cut(s) 83, 124, 297
AvaII GGWCC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 81, 172
BcgI CGANNNNNNTGC 4 cut(s) 164, 198, 368, 402
BciT130I CCWGG 1 cut(s) 309
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 388
BisI GCNGC 2 cut(s) 70, 186
BlpI GCTNAGC 1 cut(s) 267
BlsI GCNGC 2 cut(s) 71, 187
Bme1390I CCNGG 2 cut(s) 263, 309
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 2 cut(s) 51, 83
BmrFI CCNGG 2 cut(s) 263, 309
BmsI GCATC 1 cut(s) 388
Bpu1102I GCTNAGC 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 124, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 420
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 124, 198
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 120, 281
BseNI ACTGG 1 cut(s) 420
BseXI GCAGC 2 cut(s) 81, 172
BseYI CCCAGC 2 cut(s) 188, 231
BshFI GGCC 2 cut(s) 84, 197
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 388
BsnI GGCC 2 cut(s) 84, 197
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 371
Bsp1720I GCTNAGC 1 cut(s) 267
Bsp19I CCATGG 1 cut(s) 124
BspANI GGCC 2 cut(s) 84, 197
BspCNI CTCAG 2 cut(s) 119, 280
BsrI ACTGG 1 cut(s) 420
BssECI CCNNGG 2 cut(s) 124, 198
BssMI GATC 1 cut(s) 371
BssT1I CCWWGG 2 cut(s) 124, 198
Bst2UI CCWGG 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 386
BstDEI CTNAG 3 cut(s) 106, 162, 267
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 397
BstKTI GATC 1 cut(s) 374
BstMAI GTCTC 1 cut(s) 388
BstMBI GATC 1 cut(s) 371
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 261, 307
BstV1I GCAGC 2 cut(s) 81, 172
BsuRI GGCC 2 cut(s) 84, 197
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 413
CaiI CAGNNNCTG 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 51, 83
CsiI ACCWGGT 1 cut(s) 307
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 125
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 3 cut(s) 106, 162, 267
DpnI GATC 1 cut(s) 373
DpnII GATC 1 cut(s) 371
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
Eco130I CCWWGG 2 cut(s) 124, 198
Eco47I GGWCC 1 cut(s) 51
Eco57I CTGAAG 2 cut(s) 8, 352
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 2 cut(s) 124, 198
ErhI CCWWGG 2 cut(s) 124, 198
FaeI CATG 1 cut(s) 128
FaiI YATR 6 cut(s) 126, 152, 279, 281, 328, 346
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 70, 186
FokI GGATG 1 cut(s) 384
Fsp4HI GCNGC 2 cut(s) 70, 186
GluI GCNGC 2 cut(s) 70, 186
GsaI CCCAGC 2 cut(s) 192, 235
HaeIII GGCC 2 cut(s) 84, 197
HapII CCGG 1 cut(s) 263
Hin1II CATG 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 1 cut(s) 349
HpaII CCGG 1 cut(s) 263
HphI GGTGA 3 cut(s) 83, 124, 297
Hpy166II GTNNAC 2 cut(s) 411, 421
Hpy188I TCNGA 3 cut(s) 371, 376, 390
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 2 cut(s) 411, 421
HpyAV CCTTC 6 cut(s) 64, 145, 282, 294, 309, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 3 cut(s) 106, 162, 267
Hsp92II CATG 1 cut(s) 128
Kzo9I GATC 1 cut(s) 371
Lsp1109I GCAGC 2 cut(s) 81, 172
LweI GCATC 1 cut(s) 388
MabI ACCWGGT 1 cut(s) 307
MalI GATC 1 cut(s) 373
MboI GATC 1 cut(s) 371
MboII GAAGA 2 cut(s) 377, 403
MhlI GDGCHC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 29
MnlI CCTC 7 cut(s) 38, 99, 108, 121, 169, 303, 350
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 2 cut(s) 263, 309
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 194
NciI CCSGG 1 cut(s) 263
NcoI CCATGG 1 cut(s) 124
NdeII GATC 1 cut(s) 371
NlaIII CATG 1 cut(s) 128
NmeAIII GCCGAG 1 cut(s) 199
PfeI GAWTC 1 cut(s) 349
PflMI CCANNNNNTGG 1 cut(s) 48
PkrI GCNGC 2 cut(s) 71, 187
Psp6I CCWGG 1 cut(s) 307
PspFI CCCAGC 2 cut(s) 188, 231
PspGI CCWGG 1 cut(s) 307
PspPI GGNCC 2 cut(s) 51, 83
PstNI CAGNNNCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SatI GCNGC 2 cut(s) 70, 186
Sau3AI GATC 1 cut(s) 371
Sau96I GGNCC 2 cut(s) 51, 83
ScrFI CCNGG 2 cut(s) 263, 309
SduI GDGCHC 1 cut(s) 120
SexAI ACCWGGT 1 cut(s) 307
SfaNI GCATC 1 cut(s) 388
SinI GGWCC 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 261, 307
StyI CCWWGG 2 cut(s) 124, 198
TaqI TCGA 1 cut(s) 210
TatI WGTACW 1 cut(s) 63
TfiI GAWTC 1 cut(s) 349
TscAI CASTG 1 cut(s) 420
TseI GCWGC 2 cut(s) 69, 185
TspDTI ATGAA 3 cut(s) 17, 228, 291
TspRI CASTG 1 cut(s) 420
Van91I CCANNNNNTGG 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.