FvH4_3g36252

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000340
Physical Location & Seq
Forward (+)
31060119 .. 31064161
4043 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36252.t1

Sequence Viewer

Length: 987 bp
ATGTCTCACAGAGCAGAAGAAATGGATGATATTGTAGGAAAACTGCAACAAAATGTTCGCGACCACCTTGAGAAGGCCTTTTCAAAAGCCCAAGAGAAATACAGCGATCTACGGACAAAGCTTGAACAGAGTGAGGCTCAAAAGAAAGATCTGCAGAAAAAGCTTAAGGAAAGTGAAGACGCAAAGAAAGATTTCACCAAAAATCTTGAGCAGCGAGAGAAGAAACTAAAACAAATGGAGGAGAAGCTTAAGCTGGAGCGAAAGAAGGCCAGTGAAAATTTGAAAAAGCAAAAGAAAGCAAATGAGGAGCTCCTGAAGAAGATCACTGAATTGGAGGGTCGCATGGATCAAGATCAGGATCAGGATACAGAGGTCTCAAATGCGGATGAGTCTGAGGATGAGGCAGATGAGATGGTTGTAATTCGAGAAAAGTTAAAGGAGAAGGAAGAAGAGCTGGCCGATGTTTTAACTCTGAACAATACACTTATTGTCAAGGAAATAGAAAGCAACAATGAGCTACAGGAGGCACGGCAAGAGTTAATCAGAGGATGGGAATCAACAAGTCGTGCTTTTATTGGTGTCAAGAGAATGGGAGAGCTTGATAGTAAACCATTTCAGACTGCATGCAGGAGAATTTATTCTTCAAAAGTAGCAGATGACCATGCAGTAGCACTATGTTCTCTATGGGAGGCTCATCTTAAGGATTCAAGCTGGCATCCATTTAAAAACAGCACAGATTCTTTAGGACATTCTAAGGAAATTGTTGACGATGAAGATGAACAATTGAAGAAGTTAAAAGAAGAGCTTGGCGATGAAGTTCATCTAGTTGTCACAACAGCTTTACTGGAACTAAATGAGTATAACCCTAGTGGCAGGTATACAGTTAATGAGCTATGGAACTTTAAACAAGACAGGAAGGCGTCACTGAAAGAGGGAATATCATATCTGATGAATCAGTTGAAACAAAAGAAGAAAAGAACCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

38.34

Weight (kDa)

5.66

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 195 - 326 5.6e-53 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 864
AccI GTMKAC 1 cut(s) 878
AccII CGCG 1 cut(s) 60
AciI CCGC 1 cut(s) 383
AclWI GGATC 2 cut(s) 354, 366
AcoI YGGCCR 1 cut(s) 456
AcsI RAATTY 2 cut(s) 277, 633
AcuI CTGAAG 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 920
AfiI CCNNNNNNNGG 1 cut(s) 73
AflII CTTAAG 3 cut(s) 164, 248, 698
AgsI TTSAA 7 cut(s) 84, 125, 283, 645, 708, 787, 961
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 2 cut(s) 9, 379
AlwI GGATC 2 cut(s) 354, 366
AoxI GGCC 3 cut(s) 75, 267, 456
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 2 cut(s) 277, 633
Asp700I GAANNNNTTC 2 cut(s) 191, 637
AsuHPI GGTGA 1 cut(s) 187
BaeI ACNNNNGTAYC 2 cut(s) 357, 390
BanII GRGCYC 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 223
BccI CCATC 2 cut(s) 406, 543
BceAI ACGGC 1 cut(s) 545
BciVI GTATCC 1 cut(s) 358
BcoDI GTCTC 2 cut(s) 9, 379
BfaI CTAG 2 cut(s) 824, 867
BfmI CTRYAG 2 cut(s) 152, 518
BfrI CTTAAG 3 cut(s) 164, 248, 698
BfuAI ACCTGC 1 cut(s) 864
BfuI GTATCC 1 cut(s) 358
BglII AGATCT 1 cut(s) 148
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
BmsI GCATC 1 cut(s) 724
BpiI GAAGAC 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BpmI CTGGAG 1 cut(s) 275
BpuEI CTTGAG 2 cut(s) 89, 227
BsaBI GATNNNNATC 3 cut(s) 351, 357, 553
BsaHI GRCGYC 1 cut(s) 920
BsaI GGTCTC 1 cut(s) 379
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 270, 849
Bse8I GATNNNNATC 3 cut(s) 351, 357, 553
BseGI GGATG 5 cut(s) 31, 391, 403, 554, 715
BseJI GATNNNNATC 3 cut(s) 351, 357, 553
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 2 cut(s) 270, 849
BseRI GAGGAG 2 cut(s) 254, 320
BseXI GCAGC 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 77, 269, 458
BsiHKAI GWGCWC 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 2 cut(s) 9, 379
BsnI GGCC 3 cut(s) 77, 269, 458
Bso31I GGTCTC 1 cut(s) 379
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 6 cut(s) 106, 148, 321, 346, 352, 358
Bsp68I TCGCGA 1 cut(s) 60
BspACI CCGC 1 cut(s) 383
BspANI GGCC 3 cut(s) 77, 269, 458
BspCNI CTCAG 1 cut(s) 385
BspFNI CGCG 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 156
BspMI ACCTGC 1 cut(s) 864
BspPI GGATC 2 cut(s) 354, 366
BspQI GCTCTTC 2 cut(s) 444, 795
BspTI CTTAAG 3 cut(s) 164, 248, 698
BspTNI GGTCTC 1 cut(s) 379
BsrI ACTGG 2 cut(s) 270, 849
BssMI GATC 6 cut(s) 106, 148, 321, 346, 352, 358
BssNAI GTATAC 1 cut(s) 879
BssNI GRCGYC 1 cut(s) 920
Bst1107I GTATAC 1 cut(s) 879
Bst4CI ACNGT 1 cut(s) 883
Bst6I CTCTTC 2 cut(s) 444, 795
BstACI GRCGYC 1 cut(s) 920
BstAFI CTTAAG 3 cut(s) 164, 248, 698
BstC8I GCNNGC 3 cut(s) 456, 625, 713
BstDEI CTNAG 2 cut(s) 393, 753
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 5 cut(s) 31, 391, 403, 554, 715
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 6 cut(s) 109, 151, 324, 349, 355, 361
BstMAI GTCTC 2 cut(s) 9, 379
BstMBI GATC 6 cut(s) 106, 148, 321, 346, 352, 358
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 627
BstSFI CTRYAG 2 cut(s) 152, 518
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BstZ17I GTATAC 1 cut(s) 879
BsuI GTATCC 1 cut(s) 358
BsuRI GGCC 3 cut(s) 77, 269, 458
BtgZI GCGATG 1 cut(s) 825
BtsCI GGATG 5 cut(s) 31, 391, 403, 554, 715
BtsIMutI CAGTG 3 cut(s) 277, 324, 923
BtuMI TCGCGA 1 cut(s) 60
BveI ACCTGC 1 cut(s) 864
Cac8I GCNNGC 3 cut(s) 456, 625, 713
CseI GACGC 2 cut(s) 188, 909
CviAII CATG 3 cut(s) 343, 624, 662
DdeI CTNAG 2 cut(s) 393, 753
DpnI GATC 6 cut(s) 108, 150, 323, 348, 354, 360
DpnII GATC 6 cut(s) 106, 148, 321, 346, 352, 358
DraI TTTAAA 2 cut(s) 724, 904
EaeI YGGCCR 1 cut(s) 456
Eam1104I CTCTTC 2 cut(s) 444, 795
EarI CTCTTC 2 cut(s) 444, 795
Ecl136II GAGCTC 1 cut(s) 310
Eco147I AGGCCT 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 312
Eco31I GGTCTC 1 cut(s) 379
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 310
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 312
FaeI CATG 3 cut(s) 346, 627, 665
FaiI YATR 9 cut(s) 344, 625, 663, 676, 685, 861, 879, 895, 943
FalI AAGNNNNNCTT 4 cut(s) 553, 585, 789, 821
FatI CATG 3 cut(s) 342, 623, 661
FblI GTMKAC 1 cut(s) 878
Fnu4HI GCNGC 1 cut(s) 212
FokI GGATG 5 cut(s) 38, 398, 410, 561, 702
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 2 cut(s) 824, 867
GluI GCNGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 3 cut(s) 77, 269, 458
HgaI GACGC 2 cut(s) 188, 909
Hin1I GRCGYC 1 cut(s) 920
Hin1II CATG 3 cut(s) 346, 627, 665
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HindIII AAGCTT 3 cut(s) 119, 161, 245
HinfI GANTC 5 cut(s) 389, 554, 704, 737, 952
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 3 cut(s) 608, 766, 879
Hpy188I TCNGA 5 cut(s) 394, 474, 545, 618, 948
Hpy188III TCNNGA 8 cut(s) 59, 206, 313, 350, 356, 362, 425, 583
Hpy8I GTNNAC 3 cut(s) 608, 766, 879
HpyAV CCTTC 4 cut(s) 67, 259, 436, 910
HpyCH4III ACNGT 1 cut(s) 883
HpyCH4V TGCA 5 cut(s) 46, 154, 623, 627, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 2 cut(s) 393, 753
Hsp92I GRCGYC 1 cut(s) 920
Hsp92II CATG 3 cut(s) 346, 627, 665
Kzo9I GATC 6 cut(s) 106, 148, 321, 346, 352, 358
LguI GCTCTTC 2 cut(s) 444, 795
LmnI GCTCC 3 cut(s) 256, 307, 315
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 724
MaeI CTAG 2 cut(s) 824, 867
MaeIII GTNAC 2 cut(s) 829, 921
MalI GATC 6 cut(s) 108, 150, 323, 348, 354, 360
MboI GATC 6 cut(s) 106, 148, 321, 346, 352, 358
MfeI CAATTG 1 cut(s) 782
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 6 cut(s) 277, 329, 420, 633, 759, 782
MlyI GAGTC 1 cut(s) 398
MroXI GAANNNNTTC 2 cut(s) 191, 637
MspCI CTTAAG 3 cut(s) 164, 248, 698
MunI CAATTG 1 cut(s) 782
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 6 cut(s) 106, 148, 321, 346, 352, 358
NlaIII CATG 3 cut(s) 346, 627, 665
NmuCI GTSAC 2 cut(s) 829, 921
NruI TCGCGA 1 cut(s) 60
NspI RCATGY 1 cut(s) 627
PaeI GCATGC 1 cut(s) 627
PceI AGGCCT 1 cut(s) 77
PciSI GCTCTTC 2 cut(s) 444, 795
PdmI GAANNNNTTC 2 cut(s) 191, 637
PfeI GAWTC 4 cut(s) 554, 704, 737, 952
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
Psp124BI GAGCTC 1 cut(s) 312
PstI CTGCAG 1 cut(s) 156
PsuI RGATCY 1 cut(s) 148
RruI TCGCGA 1 cut(s) 60
SacI GAGCTC 1 cut(s) 312
SapI GCTCTTC 2 cut(s) 444, 795
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 6 cut(s) 106, 148, 321, 346, 352, 358
SchI GAGTC 1 cut(s) 398
SduI GDGCHC 1 cut(s) 312
SfaNI GCATC 1 cut(s) 724
SfcI CTRYAG 2 cut(s) 152, 518
SmlI CTYRAG 5 cut(s) 68, 164, 206, 248, 698
SmoI CTYRAG 5 cut(s) 68, 164, 206, 248, 698
SphI GCATGC 1 cut(s) 627
Sse9I AATT 6 cut(s) 277, 329, 420, 633, 759, 782
SseBI AGGCCT 1 cut(s) 77
SsiI CCGC 1 cut(s) 383
SspMI CTAG 2 cut(s) 824, 867
SstI GAGCTC 1 cut(s) 312
StuI AGGCCT 1 cut(s) 77
TaaI ACNGT 1 cut(s) 883
TaqI TCGA 1 cut(s) 424
TasI AATT 6 cut(s) 277, 329, 420, 633, 759, 782
TfiI GAWTC 4 cut(s) 554, 704, 737, 952
TscAI CASTG 3 cut(s) 277, 331, 930
TseFI GTSAC 2 cut(s) 829, 921
TseI GCWGC 1 cut(s) 211
Tsp45I GTSAC 2 cut(s) 829, 921
TspDTI ATGAA 5 cut(s) 786, 792, 809, 828, 965
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 3 cut(s) 277, 331, 930
Vha464I CTTAAG 3 cut(s) 164, 248, 698
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 2 cut(s) 277, 633
XceI RCATGY 1 cut(s) 627
XmiI GTMKAC 1 cut(s) 878
XmnI GAANNNNTTC 2 cut(s) 191, 637
XspI CTAG 2 cut(s) 824, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.