Rorug05G0220200

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000340
Physical Location & Seq
Forward (+)
22683134 .. 22684438
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0220200.1

Sequence Viewer

Length: 267 bp
ATGGTGTCCGAACCCACTGCAGATGTGTCCCTGATCGTCGATTCCTCAGAGTACGAGAAGAAGAAGATGAAGAAGAAGAAGAAAAGGTGCGGGTTTTTCTTCAAGAAAAGGTCGTTGTGGATATGTTGCTCAAACGTGGAGATTGAGAACGATGATGATATCAAGGACAGAGTGCTCAAGTACGTGGAGACTGATAACCACAAGTCCAAGAGAACCTCTCTCATCGTGTGCTTTTCAAGTATTGAGATCCGCGGCCGTCCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.32

Weight (kDa)

9.25

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 252
AciI CCGC 3 cut(s) 90, 250, 252
AclWI GGATC 1 cut(s) 241
AcoI YGGCCR 1 cut(s) 253
AfaI GTAC 2 cut(s) 53, 182
AgsI TTSAA 2 cut(s) 103, 237
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 1 cut(s) 241
AoxI GGCC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 177
BceAI ACGGC 1 cut(s) 240
BcgI CGANNNNNNTGC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 182
BfmI CTRYAG 1 cut(s) 18
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
BplI GAGNNNNNCTC 2 cut(s) 202, 234
BpuEI CTTGAG 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 250
BseMII CTCAG 1 cut(s) 60
BseX3I CGGCCG 1 cut(s) 253
Bsh1236I CGCG 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 1 cut(s) 255
BsiEI CGRYCG 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 177
BslFI GGGAC 1 cut(s) 13
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 13
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 2 cut(s) 33, 246
BspACI CCGC 3 cut(s) 90, 250, 252
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 59
BspFNI CGCG 1 cut(s) 252
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 33, 246
BstBAI YACGTR 1 cut(s) 184
BstDEI CTNAG 1 cut(s) 46
BstDSI CCRYGG 1 cut(s) 250
BstFNI CGCG 1 cut(s) 252
BstKTI GATC 2 cut(s) 36, 249
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 2 cut(s) 33, 246
BstMCI CGRYCG 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 18
BstUI CGCG 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 246
BstYI RGATCY 1 cut(s) 246
BstZI CGGCCG 1 cut(s) 253
BsuRI GGCC 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 250
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Cfr42I CCGCGG 1 cut(s) 253
Csp6I GTAC 2 cut(s) 52, 181
CviJI RGCY 1 cut(s) 255
CviKI_1 RGCY 1 cut(s) 255
CviQI GTAC 2 cut(s) 52, 181
DdeI CTNAG 1 cut(s) 46
DpnI GATC 2 cut(s) 35, 248
DpnII GATC 2 cut(s) 33, 246
EaeI YGGCCR 1 cut(s) 253
EagI CGGCCG 1 cut(s) 253
EclXI CGGCCG 1 cut(s) 253
Eco32I GATATC 1 cut(s) 160
Eco52I CGGCCG 1 cut(s) 253
EcoRV GATATC 1 cut(s) 160
FaiI YATR 1 cut(s) 124
FaqI GGGAC 1 cut(s) 13
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 1 cut(s) 253
Fsp4HI GCNGC 1 cut(s) 253
GluI GCNGC 1 cut(s) 253
HaeIII GGCC 1 cut(s) 255
HinfI GANTC 1 cut(s) 41
Hpy188I TCNGA 2 cut(s) 10, 49
Hpy188III TCNNGA 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 41
HpyCH4IV ACGT 2 cut(s) 135, 183
HpyCH4V TGCA 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 2 cut(s) 135, 183
KspI CCGCGG 1 cut(s) 253
Kzo9I GATC 2 cut(s) 33, 246
LpnPI CCDG 1 cut(s) 44
MaeII ACGT 2 cut(s) 135, 183
MalI GATC 2 cut(s) 35, 248
MboI GATC 2 cut(s) 33, 246
MboII GAAGA 8 cut(s) 70, 73, 76, 82, 85, 88, 91, 91
MflI RGATCY 1 cut(s) 246
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 1 cut(s) 262
MnlI CCTC 2 cut(s) 55, 226
MspA1I CMGCKG 1 cut(s) 252
MvnI CGCG 1 cut(s) 252
NdeII GATC 2 cut(s) 33, 246
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 1 cut(s) 254
Ppu21I YACGTR 1 cut(s) 184
PstI CTGCAG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 246
RsaI GTAC 2 cut(s) 53, 182
RsaNI GTAC 2 cut(s) 52, 181
SacII CCGCGG 1 cut(s) 253
SatI GCNGC 1 cut(s) 253
Sau3AI GATC 2 cut(s) 33, 246
SduI GDGCHC 1 cut(s) 177
SetI ASST 5 cut(s) 89, 113, 138, 186, 218
SfcI CTRYAG 1 cut(s) 18
Sfr303I CCGCGG 1 cut(s) 253
SgrBI CCGCGG 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 1 cut(s) 262
SsiI CCGC 3 cut(s) 90, 250, 252
TaiI ACGT 2 cut(s) 138, 186
TaqI TCGA 1 cut(s) 39
TasI AATT 1 cut(s) 262
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 1 cut(s) 41
TscAI CASTG 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.