Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8361081.1

Orthogroup ID

OG0000340

Physical Location & Seq

Genomic Coordinates Reverse (-)

653 .. 904

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8361081.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

atgcaactggctcaggaagttataaatgaagatgatgagaaactaaaacgtttgaagaaggaattgggtgatgaagcgtataatgctgtaacatcagctttaatggagataaatcaatacaaccctagcgggaggtatataacttcagaattgtggcactatggtgtgggacgaaaggctacgctgaaagagggagctgcatttattctgaaggaattgaaacaaaagaaacagcgattggatattgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010569 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0046686 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1902679 GO:1903506 GO:1903507 GO:1905348 GO:1990904 GO:2000112 GO:2000113 GO:2000779 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

83

Amino Acids

9.58

Weight (kDa)

6.59

Isoelectric Point (pI)

30.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica	Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis	pycom01g15630
rosa_chinensis	RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata	RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora	Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii	Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa	Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha	Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana	Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AciI	CCGC	1 cut(s)	129
AclI	AACGTT	1 cut(s)	49
AcuI	CTGAAG	2 cut(s)	129, 230
AgsI	TTSAA	2 cut(s)	55, 220
AjuI	GAANNNNNNNTTGG	3 cut(s)	47, 79, 221
AleI	CACNNNNGTG	1 cut(s)	162
AluBI	AGCT	2 cut(s)	98, 197
AluI	AGCT	2 cut(s)	98, 197
ApeKI	GCWGC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	126
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	184
CviJI	RGCY	4 cut(s)	11, 98, 179, 197
CviKI_1	RGCY	4 cut(s)	11, 98, 179, 197
DdeI	CTNAG	1 cut(s)	12
Eco57I	CTGAAG	2 cut(s)	129, 230
FaiI	YATR	5 cut(s)	23, 81, 138, 140, 162
FaqI	GGGAC	1 cut(s)	183
FauI	CCCGC	1 cut(s)	122
Fnu4HI	GCNGC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	1 cut(s)	198
HphI	GGTGA	1 cut(s)	80
Hpy188I	TCNGA	2 cut(s)	148, 210
Hpy188III	TCNNGA	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	52, 205
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	4, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	41, 67
MluCI	AATT	3 cut(s)	62, 149, 215
MnlI	CCTC	2 cut(s)	126, 184
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	83
OliI	CACNNNNGTG	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	199
PsiI	TTATAA	1 cut(s)	23
Psp1406I	AACGTT	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	1 cut(s)	198
SetI	ASST	4 cut(s)	52, 100, 137, 199
SgeI	CNNG	4 cut(s)	20, 26, 138, 142
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	3 cut(s)	62, 149, 215
SsiI	CCGC	1 cut(s)	129
SspMI	CTAG	1 cut(s)	126
TaiI	ACGT	1 cut(s)	52
TasI	AATT	3 cut(s)	62, 149, 215
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	42, 87
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.