FvH4_7g32330

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000340
Physical Location & Seq
Reverse (-)
23251642 .. 23256615
4974 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32330.t1

Sequence Viewer

Length: 906 bp
ATGAGCAACAAGACGTTGCTGCAGGAGGTTTGCGCCAAAAAGGGGTGGGCTGCACCCAAGTACTGTATCACCAAGCAAGGCCCTGATCACATTCCTCAGTTCTCCGCCACCGTTGTCGCCAATGACGTCAGCTTCGTCTCTCAGGGCTTCCTCGGCTCCAAGAAGGAAGCTGAGGCCTCTGCTGCCGGAATGGCGTTGCAAAAGCATCTTGGTTATCAAAGCCAACAGCCCATTAGCCCAAATGTCGAGTCTTTGTCTTCCCCAGTGAAAGTTGGCTGTGTGAACAAAGTTGAGGGCAATCCCACATCGAGTGATACTAATATCACACCGAAGAAGAAGGGTGCAGATGAAGTGGAGCAGTTGTTGGCTCAGGAACAGAAGCTATGGCAGAAAGAGAAGCTTGAGCTTGAGCTGAAGAACCTTGAATTGGCGATTGCAACTGATGTGAAGAGTAATGAGATTCAACAATTTGAGAAGAAACTGCAAGATATGAAAGAGATGGCAACAATGGAGCAGATGAAAACTAGGAGGGTGATATCATTGGTAGAAGAGAAAAAGGGAGAAAATGAGAAACTCCATATGAAAGTGGCTGAACTGGAAAAGCAACTCCAGGCAGTGAGTGGGGATATGGAAGGGGGAAAGAAGATAATCGGTCTCTCCGACTCTTTCCGAAAGGAGCAAAGCTATAAAAATGAACTCGAGGAGACTCGTAAGGCGTTGATCAATATACTAGTAACATGTTGGTTGGAAGGTCAACTAAGGCATTGTCAGGAGGAGCCAGGATTGAGTACATTTTCCAGGAGACAGGAGACAGCCTTTACTATCATGTTTGATTTAGGCAAATTCTGCGAAGAGTCAAATCGGCAAATTCTGCTTTTGATTGTAATAGTTCTGGTGTCTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

33.74

Weight (kDa)

6.49

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DND1_DSRM PF14709 3 - 66 7.4e-06 double strand RNA binding domain from DEAD END PROTEIN 1
dsrm PF00035 4 - 68 3.9e-12 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
AciI CCGC 1 cut(s) 105
AcsI RAATTY 2 cut(s) 842, 867
AcuI CTGAAG 1 cut(s) 434
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 2 cut(s) 62, 790
AfiI CCNNNNNNNGG 2 cut(s) 42, 427
AflIII ACRYGT 1 cut(s) 737
AgsI TTSAA 2 cut(s) 425, 464
AhlI ACTAGT 1 cut(s) 730
AjnI CCWGG 3 cut(s) 609, 778, 797
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AluBI AGCT 7 cut(s) 132, 170, 382, 400, 406, 412, 684
AluI AGCT 7 cut(s) 132, 170, 382, 400, 406, 412, 684
Alw26I GTCTC 5 cut(s) 142, 659, 698, 796, 803
Ama87I CYCGRG 1 cut(s) 698
AoxI GGCC 2 cut(s) 79, 174
ApeKI GCWGC 3 cut(s) 19, 50, 182
ApoI RAATTY 2 cut(s) 842, 867
ArsI GACNNNNNNTTYG 4 cut(s) 116, 148, 233, 265
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 61, 544
AvaI CYCGRG 1 cut(s) 698
BbsI GAAGAC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 3 cut(s) 6, 37, 169
BccI CCATC 1 cut(s) 493
BciT130I CCWGG 3 cut(s) 611, 780, 799
BclI TGATCA 2 cut(s) 85, 720
BcoDI GTCTC 5 cut(s) 142, 659, 698, 796, 803
BcuI ACTAGT 1 cut(s) 730
BfaI CTAG 2 cut(s) 525, 731
BfmI CTRYAG 1 cut(s) 20
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 3 cut(s) 20, 51, 183
BlsI GCNGC 3 cut(s) 21, 52, 184
BmcAI AGTACT 1 cut(s) 62
Bme1390I CCNGG 3 cut(s) 611, 780, 799
BmeT110I CYCGRG 1 cut(s) 698
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 2 cut(s) 157, 777
BmrFI CCNGG 3 cut(s) 611, 780, 799
BmrI ACTGGG 1 cut(s) 257
BmsI GCATC 1 cut(s) 214
BmuI ACTGGG 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 593
Bpu10I CCTNAGC 2 cut(s) 171, 369
BpuEI CTTGAG 2 cut(s) 422, 428
BsaHI GRCGYC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 659
BsaJI CCNNGG 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 427
Bse1I ACTGG 2 cut(s) 263, 600
BseBI CCWGG 3 cut(s) 611, 780, 799
BseDI CCNNGG 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 42, 427
BseMII CTCAG 4 cut(s) 110, 155, 162, 383
BseNI ACTGG 2 cut(s) 263, 600
BseRI GAGGAG 2 cut(s) 716, 788
BseXI GCAGC 3 cut(s) 6, 37, 169
BsgI GTGCAG 2 cut(s) 36, 363
BshFI GGCC 2 cut(s) 81, 176
BsiHKCI CYCGRG 1 cut(s) 698
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 2 cut(s) 42, 427
BsmAI GTCTC 5 cut(s) 142, 659, 698, 796, 803
BsmBI CGTCTC 1 cut(s) 142
BsnI GGCC 2 cut(s) 81, 176
Bso31I GGTCTC 1 cut(s) 659
BsoBI CYCGRG 1 cut(s) 698
Bsp143I GATC 2 cut(s) 85, 720
BspACI CCGC 1 cut(s) 105
BspANI GGCC 2 cut(s) 81, 176
BspCNI CTCAG 4 cut(s) 109, 154, 163, 382
BspLI GGNNCC 2 cut(s) 157, 777
BspMAI CTGCAG 1 cut(s) 24
BspTNI GGTCTC 1 cut(s) 659
BsrI ACTGG 2 cut(s) 263, 600
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 2 cut(s) 85, 720
BssNI GRCGYC 1 cut(s) 126
Bst2UI CCWGG 3 cut(s) 611, 780, 799
Bst4CI ACNGT 2 cut(s) 65, 112
Bst6I CTCTTC 3 cut(s) 443, 543, 846
BstACI GRCGYC 1 cut(s) 126
BstAPI GCANNNNNTGC 2 cut(s) 846, 871
BstDEI CTNAG 5 cut(s) 96, 141, 171, 369, 758
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 2 cut(s) 88, 723
BstMAI GTCTC 5 cut(s) 142, 659, 698, 796, 803
BstMBI GATC 2 cut(s) 85, 720
BstMWI GCNNNNNNNGC 5 cut(s) 153, 182, 191, 846, 871
BstNI CCWGG 3 cut(s) 611, 780, 799
BstNSI RCATGY 1 cut(s) 741
BstSCI CCNGG 3 cut(s) 609, 778, 797
BstSFI CTRYAG 1 cut(s) 20
BstV1I GCAGC 3 cut(s) 6, 37, 169
BstV2I GAAGAC 1 cut(s) 249
BsuRI GGCC 2 cut(s) 81, 176
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 2 cut(s) 270, 621
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 61, 789
CviAII CATG 2 cut(s) 738, 826
CviQI GTAC 2 cut(s) 61, 789
DdeI CTNAG 5 cut(s) 96, 141, 171, 369, 758
DpnI GATC 2 cut(s) 87, 722
DpnII GATC 2 cut(s) 85, 720
Eam1104I CTCTTC 3 cut(s) 443, 543, 846
EarI CTCTTC 3 cut(s) 443, 543, 846
EciI GGCGGA 1 cut(s) 94
Eco147I AGGCCT 1 cut(s) 176
Eco31I GGTCTC 1 cut(s) 659
Eco32I GATATC 1 cut(s) 537
Eco57I CTGAAG 1 cut(s) 434
Eco88I CYCGRG 1 cut(s) 698
EcoO109I RGGNCCY 1 cut(s) 80
EcoRII CCWGG 3 cut(s) 609, 778, 797
EcoRV GATATC 1 cut(s) 537
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 2 cut(s) 741, 829
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FatI CATG 2 cut(s) 737, 825
FauNDI CATATG 1 cut(s) 579
FbaI TGATCA 2 cut(s) 85, 720
Fnu4HI GCNGC 3 cut(s) 20, 51, 183
Fsp4HI GCNGC 3 cut(s) 20, 51, 183
FspBI CTAG 2 cut(s) 525, 731
GlaI GCGC 1 cut(s) 34
GluI GCNGC 3 cut(s) 20, 51, 183
GsuI CTGGAG 1 cut(s) 593
HaeIII GGCC 2 cut(s) 81, 176
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 2 cut(s) 741, 829
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 755
HindII GTYRAC 1 cut(s) 755
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 5 cut(s) 248, 460, 662, 706, 854
HpaII CCGG 1 cut(s) 186
HphI GGTGA 2 cut(s) 61, 544
Hpy166II GTNNAC 2 cut(s) 283, 755
Hpy188I TCNGA 2 cut(s) 661, 671
Hpy188III TCNNGA 2 cut(s) 371, 770
Hpy8I GTNNAC 2 cut(s) 283, 755
HpyAV CCTTC 4 cut(s) 157, 331, 626, 743
HpyCH4III ACNGT 2 cut(s) 65, 112
HpyCH4IV ACGT 2 cut(s) 14, 126
HpyCH4V TGCA 6 cut(s) 22, 53, 199, 344, 437, 484
HpyF10VI GCNNNNNNNGC 5 cut(s) 153, 182, 191, 846, 871
HpyF3I CTNAG 5 cut(s) 96, 141, 171, 369, 758
HpySE526I ACGT 2 cut(s) 14, 126
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 2 cut(s) 741, 829
HspAI GCGC 1 cut(s) 33
Ksp22I TGATCA 2 cut(s) 85, 720
Kzo9I GATC 2 cut(s) 85, 720
LmnI GCTCC 5 cut(s) 161, 355, 511, 676, 775
Lsp1109I GCAGC 3 cut(s) 6, 37, 169
LweI GCATC 1 cut(s) 214
MaeI CTAG 2 cut(s) 525, 731
MaeII ACGT 2 cut(s) 14, 126
MaeIII GTNAC 1 cut(s) 733
MalI GATC 2 cut(s) 87, 722
MboI GATC 2 cut(s) 85, 720
MboII GAAGA 9 cut(s) 249, 343, 346, 427, 460, 487, 560, 655, 863
MluCI AATT 4 cut(s) 425, 467, 842, 867
MlyI GAGTC 4 cut(s) 257, 656, 700, 863
MmeI TCCRAC 2 cut(s) 684, 726
MnlI CCTC 9 cut(s) 19, 105, 161, 166, 187, 286, 522, 694, 766
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 3 cut(s) 611, 780, 799
MvaI CCWGG 3 cut(s) 611, 780, 799
MwoI GCNNNNNNNGC 5 cut(s) 153, 182, 191, 846, 871
NdeI CATATG 1 cut(s) 579
NdeII GATC 2 cut(s) 85, 720
NlaIII CATG 2 cut(s) 741, 829
NlaIV GGNNCC 2 cut(s) 157, 777
NmeAIII GCCGAG 1 cut(s) 132
NspI RCATGY 1 cut(s) 741
PaeR7I CTCGAG 1 cut(s) 698
PceI AGGCCT 1 cut(s) 176
PciI ACATGT 1 cut(s) 737
PcsI WCGNNNNNNNCGW 3 cut(s) 123, 132, 657
PfeI GAWTC 1 cut(s) 460
PfoI TCCNGGA 1 cut(s) 797
PkrI GCNGC 3 cut(s) 21, 52, 184
PleI GAGTC 4 cut(s) 256, 656, 700, 862
PpsI GAGTC 4 cut(s) 256, 656, 700, 862
PscI ACATGT 1 cut(s) 737
Psp6I CCWGG 3 cut(s) 609, 778, 797
PspGI CCWGG 3 cut(s) 609, 778, 797
PspN4I GGNNCC 2 cut(s) 157, 777
PspPI GGNCC 1 cut(s) 80
PspXI VCTCGAGB 1 cut(s) 698
PstI CTGCAG 1 cut(s) 24
RsaI GTAC 2 cut(s) 62, 790
RsaNI GTAC 2 cut(s) 61, 789
SatI GCNGC 3 cut(s) 20, 51, 183
Sau3AI GATC 2 cut(s) 85, 720
Sau96I GGNCC 1 cut(s) 80
ScaI AGTACT 1 cut(s) 62
SchI GAGTC 4 cut(s) 257, 656, 700, 863
ScrFI CCNGG 3 cut(s) 611, 780, 799
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 1 cut(s) 20
Sfr274I CTCGAG 1 cut(s) 698
SlaI CTCGAG 1 cut(s) 698
SmlI CTYRAG 3 cut(s) 401, 407, 698
SmoI CTYRAG 3 cut(s) 401, 407, 698
SpeI ACTAGT 1 cut(s) 730
Sse9I AATT 4 cut(s) 425, 467, 842, 867
SseBI AGGCCT 1 cut(s) 176
SsiI CCGC 1 cut(s) 105
SspMI CTAG 2 cut(s) 525, 731
StuI AGGCCT 1 cut(s) 176
StyD4I CCNGG 3 cut(s) 609, 778, 797
TaaI ACNGT 2 cut(s) 65, 112
TaiI ACGT 2 cut(s) 17, 129
TaqI TCGA 3 cut(s) 246, 308, 699
TaqII GACCGA 1 cut(s) 641
TasI AATT 4 cut(s) 425, 467, 842, 867
TatI WGTACW 2 cut(s) 60, 788
TfiI GAWTC 1 cut(s) 460
TscAI CASTG 2 cut(s) 270, 621
TseI GCWGC 3 cut(s) 19, 50, 182
TspDTI ATGAA 5 cut(s) 363, 506, 533, 596, 708
TspRI CASTG 2 cut(s) 270, 621
XapI RAATTY 2 cut(s) 842, 867
XceI RCATGY 1 cut(s) 741
XcmI CCANNNNNNNNNTGG 1 cut(s) 617
XhoI CTCGAG 1 cut(s) 698
XspI CTAG 2 cut(s) 525, 731
ZraI GACGTC 1 cut(s) 127
ZrmI AGTACT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.