RchiOBHm_Chr5g0057601

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000340
Physical Location & Seq
Reverse (-)
61537043 .. 61538085
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33437

Sequence Viewer

Length: 597 bp
ATGAATATTAAAGCACTTGAACAAATGTTAAAGGAGAAGGAGAAGGAGCTTACTGATCTGTCAGAATTTTACAATGCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCAGGGGGCCCGTAAAGAGTTAATTGATGGACTGAAAAATCATTCAAAAATCTATATTGGCATGAAGACATTGGGTGATCTTGACTTGAAGACATTTCAAGTTGCAGCCAAGAGAATATATACTGCAATAGAAGAAGCAAATGAGAGGGCAGTGGAGTTGTGCTCTGTGTGGGAGGATTATGTTGGGGATTCTAATTGGAACCCATACAAGGTTATTATGGATGAGACAGGAAAAAGAATGACTGAGCTGGGGGATGAAGTATACAAGGTGGTGACAACTTCGTTAATGGAATTGAATGAACATAATTCCAATGGGAGGTATAGGATACAAGATCTTTGGAATTTTAAAGCAGGGAGGAAGGCAACACTTAAAGAGGGAGTTGCTTACATTCTGAAGCAATGGAACGCGCTTAAAGAACACGAAGCGGAGAAGAAACTAAAAGTAAGGCATATGTGTTTATATTTTACTACCTCCACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

23.08

Weight (kDa)

6.46

Isoelectric Point (pI)

24.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 60 - 177 1.6e-35 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 375
AccII CGCG 1 cut(s) 521
AciI CCGC 1 cut(s) 539
AcsI RAATTY 2 cut(s) 65, 454
AcuI CTGAAG 1 cut(s) 527
AfiI CCNNNNNNNGG 2 cut(s) 322, 429
AgsI TTSAA 6 cut(s) 20, 88, 159, 202, 212, 409
AluBI AGCT 3 cut(s) 49, 112, 361
AluI AGCT 3 cut(s) 49, 112, 361
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 1 cut(s) 332
AoxI GGCC 1 cut(s) 120
ApaI GGGCCC 1 cut(s) 124
ApeKI GCWGC 2 cut(s) 112, 218
ApoI RAATTY 2 cut(s) 65, 454
AspLEI GCGC 1 cut(s) 523
AspS9I GGNCC 2 cut(s) 120, 121
AsuHPI GGTGA 2 cut(s) 200, 397
BaeGI GKGCMC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 124
BbsI GAAGAC 2 cut(s) 185, 209
Bbv12I GWGCWC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 99, 230
BccI CCATC 1 cut(s) 134
BciVI GTATCC 1 cut(s) 432
BcoDI GTCTC 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 113
BfuI GTATCC 1 cut(s) 432
BglII AGATCT 1 cut(s) 445
BisI GCNGC 2 cut(s) 113, 219
BlsI GCNGC 2 cut(s) 114, 220
BmgT120I GGNCC 2 cut(s) 120, 121
BmiI GGNNCC 3 cut(s) 121, 122, 314
BpiI GAAGAC 2 cut(s) 185, 209
BplI GAGNNNNNCTC 2 cut(s) 260, 292
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 429
Bse3DI GCAATG 1 cut(s) 518
BseGI GGATG 2 cut(s) 340, 373
BseLI CCNNNNNNNGG 2 cut(s) 322, 429
BseMI GCAATG 1 cut(s) 518
BseMII CTCAG 1 cut(s) 348
BseRI GAGGAG 1 cut(s) 109
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 2 cut(s) 99, 230
BseYI CCCAGC 1 cut(s) 361
Bsh1236I CGCG 1 cut(s) 521
BshFI GGCC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 278
BslI CCNNNNNNNGG 2 cut(s) 322, 429
BsmAI GTCTC 1 cut(s) 332
BsnI GGCC 1 cut(s) 122
Bsp120I GGGCCC 1 cut(s) 120
Bsp1286I GDGCHC 2 cut(s) 124, 278
Bsp143I GATC 3 cut(s) 55, 190, 445
BspACI CCGC 1 cut(s) 539
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 521
BspLI GGNNCC 3 cut(s) 121, 122, 314
BspMAI CTGCAG 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 518
BssMI GATC 3 cut(s) 55, 190, 445
BssNAI GTATAC 1 cut(s) 376
Bst1107I GTATAC 1 cut(s) 376
Bst4CI ACNGT 1 cut(s) 592
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 2 cut(s) 340, 373
BstFNI CGCG 1 cut(s) 521
BstHHI GCGC 1 cut(s) 523
BstKTI GATC 3 cut(s) 58, 193, 448
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 3 cut(s) 55, 190, 445
BstSFI CTRYAG 1 cut(s) 113
BstSLI GKGCMC 1 cut(s) 124
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 2 cut(s) 99, 230
BstV2I GAAGAC 2 cut(s) 185, 209
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BstZ17I GTATAC 1 cut(s) 376
BsuI GTATCC 1 cut(s) 432
BsuRI GGCC 1 cut(s) 122
BtsCI GGATG 2 cut(s) 340, 373
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 3 cut(s) 77, 270, 588
CfoI GCGC 1 cut(s) 523
Cfr13I GGNCC 2 cut(s) 120, 121
CviAII CATG 1 cut(s) 175
CviJI RGCY 5 cut(s) 49, 112, 122, 221, 361
CviKI_1 RGCY 5 cut(s) 49, 112, 122, 221, 361
DdeI CTNAG 1 cut(s) 357
DpnI GATC 3 cut(s) 57, 192, 447
DpnII GATC 3 cut(s) 55, 190, 445
DraI TTTAAA 1 cut(s) 460
Eco24I GRGCYC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 527
EcoO109I RGGNCCY 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 124
FaeI CATG 1 cut(s) 178
FatI CATG 1 cut(s) 174
FauNDI CATATG 1 cut(s) 564
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 2 cut(s) 113, 219
FokI GGATG 2 cut(s) 347, 380
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 2 cut(s) 113, 219
GlaI GCGC 1 cut(s) 522
GluI GCNGC 2 cut(s) 113, 219
GsaI CCCAGC 1 cut(s) 365
HaeIII GGCC 1 cut(s) 122
HhaI GCGC 1 cut(s) 523
Hin1II CATG 1 cut(s) 178
Hin6I GCGC 1 cut(s) 521
HinP1I GCGC 1 cut(s) 521
HinfI GANTC 1 cut(s) 302
HphI GGTGA 2 cut(s) 200, 397
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 2 cut(s) 64, 507
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 3 cut(s) 31, 37, 466
HpyCH4III ACNGT 1 cut(s) 592
HpyCH4V TGCA 4 cut(s) 77, 115, 218, 239
HpyF3I CTNAG 1 cut(s) 357
Hsp92II CATG 1 cut(s) 178
HspAI GCGC 1 cut(s) 521
Kzo9I GATC 3 cut(s) 55, 190, 445
LmnI GCTCC 2 cut(s) 46, 96
LpnPI CCDG 4 cut(s) 101, 327, 347, 450
Lsp1109I GCAGC 2 cut(s) 99, 230
MaeIII GTNAC 1 cut(s) 385
MalI GATC 3 cut(s) 57, 192, 447
MboI GATC 3 cut(s) 55, 190, 445
MboII GAAGA 4 cut(s) 190, 214, 257, 556
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 2 cut(s) 124, 278
MluCI AATT 6 cut(s) 65, 135, 307, 404, 418, 454
MnlI CCTC 7 cut(s) 87, 252, 280, 423, 462, 481, 595
MseI TTAA 7 cut(s) 9, 29, 134, 398, 459, 483, 525
MvnI CGCG 1 cut(s) 521
NdeI CATATG 1 cut(s) 564
NdeII GATC 3 cut(s) 55, 190, 445
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 3 cut(s) 121, 122, 314
NmuCI GTSAC 1 cut(s) 385
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 2 cut(s) 114, 220
PspFI CCCAGC 1 cut(s) 361
PspN4I GGNNCC 3 cut(s) 121, 122, 314
PspOMI GGGCCC 1 cut(s) 120
PspPI GGNCC 2 cut(s) 120, 121
PstI CTGCAG 1 cut(s) 117
PsuI RGATCY 1 cut(s) 445
SaqAI TTAA 7 cut(s) 9, 29, 134, 398, 459, 483, 525
SatI GCNGC 2 cut(s) 113, 219
Sau3AI GATC 3 cut(s) 55, 190, 445
Sau96I GGNCC 2 cut(s) 120, 121
SduI GDGCHC 2 cut(s) 124, 278
SetI ASST 7 cut(s) 51, 114, 327, 363, 384, 434, 587
SfcI CTRYAG 1 cut(s) 113
Sse9I AATT 6 cut(s) 65, 135, 307, 404, 418, 454
SsiI CCGC 1 cut(s) 539
SspI AATATT 1 cut(s) 7
TaaI ACNGT 1 cut(s) 592
TasI AATT 6 cut(s) 65, 135, 307, 404, 418, 454
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 7 cut(s) 9, 29, 134, 398, 459, 483, 525
Tru9I TTAA 7 cut(s) 9, 29, 134, 398, 459, 483, 525
TscAI CASTG 3 cut(s) 84, 270, 595
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 2 cut(s) 112, 218
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 4 cut(s) 17, 191, 384, 426
TspRI CASTG 3 cut(s) 84, 270, 595
XapI RAATTY 2 cut(s) 65, 454
XmiI GTMKAC 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.