Rh5AG426100

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000340
Physical Location & Seq
Forward (+)
73483325 .. 73488642
5318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG426100.1

Sequence Viewer

Length: 1236 bp
ATGAAGAAGCTTTCAATTAGCTGCCCCCAGAGATTATCCCAATACATGATTTTCATTTATACCATCGGCTGCAGAAAACTGCAACAAAATGCTCGTGACCATCTTGAAAAGGCCTTCTTGGAGCAAGGCAAAGCCTTTTCCAAATCTGAAGGGCAAAAGAATGATCTTGAGAAAAAGCTTGAACAGAACGAGGCTCAAAAGAAAGATCTGCAGAAAAAGCTTGAGCAAAGTGAACTTGCCAAAAAAGAGCTTCAGCAGAAGACTGAAGATGCACAGATGTGGGTGGACATGTATTTTGTGGTTAGGGAAGAGCAGAAGCAGAGTGAAACTCAGATGAAAGAGATTCAGAAAAAGCTTGAGCAGAGTGAATCCCAGAAGAGAGAGCTTGAGAAGATTGAACAAGCTCAAAAGAACGAACTTAAGAAGGCACTTGAGCAGATTGAAGCTCAAAAGAAAGATTTTGAGCAGCGCGAGATGAAATTAAAACAAATGCAGGAGAGGGTTAATATTGAGCAGAGGAAGGCTAATGAAAATTTGTTAAAAGAAAAGAAAGAAAATGAGGAGCTCCGGAACAAGATCACTGAGTTGGAGGATCGTAAGAATCAAGTTCAGGATGAGGAGGATTTAGATGATGAGTCTGAGGACGAGCATGAAGAGATGGATGAAATTCGAGAAAAGTTAAAGGAGAAAGAAGAAGAGCTGGCCAATGTTGAAGCTCTAAACAACACACTTATTGTTAAGGAGCTTAAAAGCAACACTGAACTGCAGGAGGCTCGTAGAGAGATAATCAGAGGATGGGAATCAGCAAGTCGTGCTTTTATTGGTGTCAAGAGAATGGGAGAGCTTGACAGCAAACCATTTCAGACTGCATGCAAGAGAAAATATAATACAGAAGAAGCAGATGACCAGGCAGCAGCACTATGTTCTCTATGGGAGAATTATATTAAGGATTCAAGCTGGTATCCATTCAAAACTAGCAAGGATTCCTTTGGACATTGTAAGGAGATTATTGATGAAGAAGATGAAAAATTGAAAAAGTTAAAGAACGAGTTTGGTGCTGAAGTTCATCTGGCTGTGTCAACTGCTTTGCTGGAATTGAATGAGTATAATCCCAGTGGTAGGTATGCACTTAAAGAACTATGGAACTTTAATCAAGATAGAAGGGCATCATTAAAAGAGGGAATATTGCATCTCCTGAAGCAGTTGAAACTGCAAAAGAGGAGAAGAACCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

411

Amino Acids

48.83

Weight (kDa)

5.72

Isoelectric Point (pI)

57.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 277 - 408 4.6e-53 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 471
AccIII TCCGGA 1 cut(s) 567
AclWI GGATC 1 cut(s) 600
AcoI YGGCCR 1 cut(s) 702
AcsI RAATTY 2 cut(s) 532, 666
AcuI CTGAAG 5 cut(s) 168, 236, 285, 1080, 1217
AfiI CCNNNNNNNGG 1 cut(s) 1119
AflII CTTAAG 1 cut(s) 419
AflIII ACRYGT 1 cut(s) 288
AjnI CCWGG 1 cut(s) 906
AleI CACNNNNGTG 1 cut(s) 277
Alw21I GWGCWC 1 cut(s) 567
AlwI GGATC 1 cut(s) 600
Aor13HI TCCGGA 1 cut(s) 567
AoxI GGCC 2 cut(s) 111, 702
ApeKI GCWGC 5 cut(s) 21, 69, 466, 911, 914
ApoI RAATTY 2 cut(s) 532, 666
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
AspLEI GCGC 1 cut(s) 471
BalI TGGCCA 1 cut(s) 704
BanII GRGCYC 1 cut(s) 567
BauI CACGAG 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 567
BbvI GCAGC 5 cut(s) 8, 56, 478, 923, 926
BccI CCATC 4 cut(s) 71, 108, 652, 789
BcgI CGANNNNNNTGC 4 cut(s) 755, 789, 1037, 1071
BciT130I CCWGG 1 cut(s) 908
BciVI GTATCC 1 cut(s) 972
BfaI CTAG 1 cut(s) 975
BfmI CTRYAG 3 cut(s) 70, 209, 764
BfrI CTTAAG 1 cut(s) 419
BfuI GTATCC 1 cut(s) 972
BglII AGATCT 1 cut(s) 205
BisI GCNGC 5 cut(s) 22, 70, 467, 912, 915
BlsI GCNGC 5 cut(s) 23, 71, 468, 913, 916
Bme1390I CCNGG 1 cut(s) 908
BmrFI CCNGG 1 cut(s) 908
BmrI ACTGGG 1 cut(s) 1107
BmsI GCATC 3 cut(s) 259, 1175, 1198
BmuI ACTGGG 1 cut(s) 1107
BpiI GAAGAC 1 cut(s) 266
BplI GAGNNNNNCTC 2 cut(s) 313, 345
BpuEI CTTGAG 5 cut(s) 188, 242, 377, 407, 452
BsaBI GATNNNNATC 1 cut(s) 799
BsaWI WCCGGW 1 cut(s) 567
Bsc4I CCNNNNNNNGG 1 cut(s) 1119
Bse1I ACTGG 1 cut(s) 1113
Bse8I GATNNNNATC 1 cut(s) 799
BseAI TCCGGA 1 cut(s) 567
BseBI CCWGG 1 cut(s) 908
BseGI GGATG 3 cut(s) 619, 667, 800
BseJI GATNNNNATC 1 cut(s) 799
BseLI CCNNNNNNNGG 1 cut(s) 1119
BseMII CTCAG 3 cut(s) 344, 573, 630
BseNI ACTGG 1 cut(s) 1113
BseRI GAGGAG 3 cut(s) 575, 632, 1234
BseXI GCAGC 5 cut(s) 8, 56, 478, 923, 926
Bsh1236I CGCG 1 cut(s) 471
BshFI GGCC 2 cut(s) 113, 704
BsiHKAI GWGCWC 1 cut(s) 567
BsiSI CCGG 1 cut(s) 568
BslI CCNNNNNNNGG 1 cut(s) 1119
BsnI GGCC 2 cut(s) 113, 704
Bsp1286I GDGCHC 1 cut(s) 567
Bsp13I TCCGGA 1 cut(s) 567
Bsp143I GATC 4 cut(s) 163, 205, 576, 592
BspANI GGCC 2 cut(s) 113, 704
BspCNI CTCAG 3 cut(s) 343, 574, 631
BspEI TCCGGA 1 cut(s) 567
BspFNI CGCG 1 cut(s) 471
BspMAI CTGCAG 3 cut(s) 74, 213, 768
BspPI GGATC 1 cut(s) 600
BspQI GCTCTTC 2 cut(s) 303, 690
BspTI CTTAAG 1 cut(s) 419
BsrI ACTGG 1 cut(s) 1113
BssMI GATC 4 cut(s) 163, 205, 576, 592
BssSI CACGAG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 908
Bst6I CTCTTC 4 cut(s) 303, 371, 648, 690
BstAFI CTTAAG 1 cut(s) 419
BstAPI GCANNNNNTGC 1 cut(s) 812
BstC8I GCNNGC 2 cut(s) 702, 871
BstDEI CTNAG 3 cut(s) 330, 582, 639
BstF5I GGATG 3 cut(s) 619, 667, 800
BstFNI CGCG 1 cut(s) 471
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 4 cut(s) 166, 208, 579, 595
BstMBI GATC 4 cut(s) 163, 205, 576, 592
BstMWI GCNNNNNNNGC 2 cut(s) 217, 812
BstNI CCWGG 1 cut(s) 908
BstNSI RCATGY 2 cut(s) 292, 873
BstSCI CCNGG 1 cut(s) 906
BstSFI CTRYAG 3 cut(s) 70, 209, 764
BstUI CGCG 1 cut(s) 471
BstV1I GCAGC 5 cut(s) 8, 56, 478, 923, 926
BstV2I GAAGAC 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuI GTATCC 1 cut(s) 972
BsuRI GGCC 2 cut(s) 113, 704
BtsCI GGATG 3 cut(s) 619, 667, 800
BtsIMutI CAGTG 3 cut(s) 579, 756, 1120
Cac8I GCNNGC 2 cut(s) 702, 871
CfoI GCGC 1 cut(s) 471
CviAII CATG 4 cut(s) 46, 289, 650, 870
DdeI CTNAG 3 cut(s) 330, 582, 639
DpnI GATC 4 cut(s) 165, 207, 578, 594
DpnII GATC 4 cut(s) 163, 205, 576, 592
EaeI YGGCCR 1 cut(s) 702
Eam1104I CTCTTC 4 cut(s) 303, 371, 648, 690
EarI CTCTTC 4 cut(s) 303, 371, 648, 690
Ecl136II GAGCTC 1 cut(s) 565
Eco147I AGGCCT 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 567
Eco53kI GAGCTC 1 cut(s) 565
Eco57I CTGAAG 5 cut(s) 168, 236, 285, 1080, 1217
EcoICRI GAGCTC 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 906
EcoT38I GRGCYC 1 cut(s) 567
FaeI CATG 4 cut(s) 49, 292, 653, 873
FalI AAGNNNNNCTT 6 cut(s) 101, 133, 799, 831, 971, 1003
FatI CATG 4 cut(s) 45, 288, 649, 869
Fnu4HI GCNGC 5 cut(s) 22, 70, 467, 912, 915
FokI GGATG 3 cut(s) 626, 674, 807
FriOI GRGCYC 1 cut(s) 567
Fsp4HI GCNGC 5 cut(s) 22, 70, 467, 912, 915
FspBI CTAG 1 cut(s) 975
GlaI GCGC 1 cut(s) 470
GluI GCNGC 5 cut(s) 22, 70, 467, 912, 915
HaeIII GGCC 2 cut(s) 113, 704
HapII CCGG 1 cut(s) 568
HhaI GCGC 1 cut(s) 471
Hin1II CATG 4 cut(s) 49, 292, 653, 873
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HincII GTYRAC 1 cut(s) 1080
HindII GTYRAC 1 cut(s) 1080
HindIII AAGCTT 4 cut(s) 8, 176, 218, 353
HinfI GANTC 7 cut(s) 343, 368, 601, 635, 800, 950, 983
HpaII CCGG 1 cut(s) 568
Hpy166II GTNNAC 3 cut(s) 233, 286, 1080
Hpy188I TCNGA 6 cut(s) 148, 333, 348, 640, 791, 864
Hpy188III TCNNGA 9 cut(s) 95, 104, 167, 568, 611, 671, 829, 1154, 1195
Hpy8I GTNNAC 3 cut(s) 233, 286, 1080
HpyAV CCTTC 5 cut(s) 124, 143, 418, 514, 1155
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 812
HpyF3I CTNAG 3 cut(s) 330, 582, 639
Hsp92II CATG 4 cut(s) 49, 292, 653, 873
HspAI GCGC 1 cut(s) 469
Kpn2I TCCGGA 1 cut(s) 567
Kzo9I GATC 4 cut(s) 163, 205, 576, 592
LguI GCTCTTC 2 cut(s) 303, 690
LmnI GCTCC 4 cut(s) 121, 562, 570, 742
Lsp1109I GCAGC 5 cut(s) 8, 56, 478, 923, 926
LweI GCATC 3 cut(s) 259, 1175, 1198
MaeI CTAG 1 cut(s) 975
MaeIII GTNAC 1 cut(s) 95
MalI GATC 4 cut(s) 165, 207, 578, 594
MboI GATC 4 cut(s) 163, 205, 576, 592
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 567
MlsI TGGCCA 1 cut(s) 704
MluCI AATT 7 cut(s) 15, 479, 532, 666, 937, 1028, 1094
MluNI TGGCCA 1 cut(s) 704
MlyI GAGTC 1 cut(s) 644
MmeI TCCRAC 1 cut(s) 567
Mox20I TGGCCA 1 cut(s) 704
MroI TCCGGA 1 cut(s) 567
MscI TGGCCA 1 cut(s) 704
MslI CAYNNNNRTG 1 cut(s) 277
Msp20I TGGCCA 1 cut(s) 704
MspCI CTTAAG 1 cut(s) 419
MspI CCGG 1 cut(s) 568
MspR9I CCNGG 1 cut(s) 908
MvaI CCWGG 1 cut(s) 908
MvnI CGCG 1 cut(s) 471
MwoI GCNNNNNNNGC 2 cut(s) 217, 812
NdeII GATC 4 cut(s) 163, 205, 576, 592
NlaIII CATG 4 cut(s) 49, 292, 653, 873
NmuCI GTSAC 1 cut(s) 95
NspI RCATGY 2 cut(s) 292, 873
OliI CACNNNNGTG 1 cut(s) 277
PaeI GCATGC 1 cut(s) 873
PceI AGGCCT 1 cut(s) 113
PciI ACATGT 1 cut(s) 288
PciSI GCTCTTC 2 cut(s) 303, 690
PfeI GAWTC 6 cut(s) 343, 368, 601, 800, 950, 983
PkrI GCNGC 5 cut(s) 23, 71, 468, 913, 916
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
PscI ACATGT 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 567
Psp6I CCWGG 1 cut(s) 906
PspGI CCWGG 1 cut(s) 906
PstI CTGCAG 3 cut(s) 74, 213, 768
PsuI RGATCY 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 277
SacI GAGCTC 1 cut(s) 567
SapI GCTCTTC 2 cut(s) 303, 690
SatI GCNGC 5 cut(s) 22, 70, 467, 912, 915
Sau3AI GATC 4 cut(s) 163, 205, 576, 592
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 1 cut(s) 908
SduI GDGCHC 1 cut(s) 567
SfaNI GCATC 3 cut(s) 259, 1175, 1198
SfcI CTRYAG 3 cut(s) 70, 209, 764
SmiMI CAYNNNNRTG 1 cut(s) 277
SmlI CTYRAG 6 cut(s) 167, 221, 356, 386, 419, 431
SmoI CTYRAG 6 cut(s) 167, 221, 356, 386, 419, 431
SphI GCATGC 1 cut(s) 873
Sse9I AATT 7 cut(s) 15, 479, 532, 666, 937, 1028, 1094
SseBI AGGCCT 1 cut(s) 113
SspI AATATT 2 cut(s) 508, 1185
SspMI CTAG 1 cut(s) 975
SstI GAGCTC 1 cut(s) 567
StuI AGGCCT 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 906
TaqI TCGA 1 cut(s) 670
TasI AATT 7 cut(s) 15, 479, 532, 666, 937, 1028, 1094
TfiI GAWTC 6 cut(s) 343, 368, 601, 800, 950, 983
TscAI CASTG 3 cut(s) 586, 763, 1120
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 5 cut(s) 21, 69, 466, 911, 914
Tsp45I GTSAC 1 cut(s) 95
TspRI CASTG 3 cut(s) 586, 763, 1120
Vha464I CTTAAG 1 cut(s) 419
XapI RAATTY 2 cut(s) 532, 666
XceI RCATGY 2 cut(s) 292, 873
XspI CTAG 1 cut(s) 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.