Rroxscaffold_7G00201680

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000340
Physical Location & Seq
Forward (+)
49398883 .. 49401844
2962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00201680.1

Sequence Viewer

Length: 816 bp
ATGCTTACCTATAAGAAAGAAGCCGAGTGCTGTGCTGCTGGGTTGGCCTTGGATTACTTCGATGAAAACCCACAACCACCCCAGCCCAAACACACCAAGTGTTTCTCTTTCTCGGCTCAGCCGTCTCATATAGCCTCACTTCCTCCACCTTCATCACCAGTTCTGATTTCATGTCTGTGTATCAAGTTCGCTGTATCTCACATACAAGGAGAAAGAGATATGGGTGAGTCTCTATTTTTTAAGGTTGATATTTCTGATTCTGTTCCTGAAGAAAGGCTATGGCAGAGAGAAAAGCATCAGCTTCCACTAAAGAACATTGAATTGGAGAATCAGATTGATATGAAAAAGAATGAGCTGGAGCACTGCCGCAAGGAGCTACAGCATATGAATGAGAGAGCAGAATCAGAGCAGAAGAAGGCAGAAAATTTGATAGCGCTGGCAGAAAAGAGAAAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAAACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAGGCCCAGATGAATATTAAAGCACTTGAAAAAATGTTAAAGGAGAAGGAGCATGAGCTTACTGATCTCTCAGAATTTTACAATGCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCAGGGGGCCCGTAAAGAGTTAATTGATGTGGACATTGTATGTGGAGGATCATATAGATGCGGGAAAGCTTCTTGTGGGGATCTGGATATTGTAATTACACATCCTGATGGAAACCAGCATGAAAGCTACCTTTTCTTTGCCTTCTTTCCTTTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

31.18

Weight (kDa)

5.39

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_B_palm PF14792 228 - 260 6.3e-09 DNA polymerase beta palm
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 367, 717
AclWI GGATC 2 cut(s) 712, 744
AcsI RAATTY 2 cut(s) 424, 608
AcuI CTGAAG 1 cut(s) 288
AdeI CACNNNGTG 1 cut(s) 99
AfeI AGCGCT 1 cut(s) 435
AgsI TTSAA 5 cut(s) 320, 488, 493, 563, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AluBI AGCT 9 cut(s) 301, 355, 376, 469, 502, 592, 655, 725, 783
AluI AGCT 9 cut(s) 301, 355, 376, 469, 502, 592, 655, 725, 783
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 2 cut(s) 129, 234
AlwI GGATC 2 cut(s) 712, 744
Aor51HI AGCGCT 1 cut(s) 435
AoxI GGCC 3 cut(s) 45, 537, 663
ApaI GGGCCC 1 cut(s) 667
ApeKI GCWGC 2 cut(s) 35, 655
ApoI RAATTY 2 cut(s) 424, 608
AspLEI GCGC 1 cut(s) 436
AspS9I GGNCC 3 cut(s) 538, 663, 664
AsuHPI GGTGA 2 cut(s) 147, 236
BaeGI GKGCMC 1 cut(s) 667
BanII GRGCYC 1 cut(s) 667
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 2 cut(s) 22, 642
BccI CCATC 1 cut(s) 758
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BcoDI GTCTC 2 cut(s) 129, 234
BfmI CTRYAG 2 cut(s) 377, 656
BfoI RGCGCY 1 cut(s) 437
BglI GCCNNNNNGGC 1 cut(s) 515
BisI GCNGC 3 cut(s) 36, 367, 656
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 3 cut(s) 37, 368, 657
BmgT120I GGNCC 3 cut(s) 538, 663, 664
BmiI GGNNCC 2 cut(s) 664, 665
BmsI GCATC 2 cut(s) 304, 704
BpmI CTGGAG 1 cut(s) 377
Bpu1102I GCTNAGC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 757
BseMII CTCAG 3 cut(s) 131, 489, 618
BseNI ACTGG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 652
BseSI GKGCMC 1 cut(s) 667
BseXI GCAGC 2 cut(s) 22, 642
BseYI CCCAGC 2 cut(s) 38, 81
BshFI GGCC 3 cut(s) 47, 539, 665
BsiHKAI GWGCWC 1 cut(s) 363
BsmAI GTCTC 2 cut(s) 129, 234
BsmBI CGTCTC 1 cut(s) 129
BsnI GGCC 3 cut(s) 47, 539, 665
Bsp120I GGGCCC 1 cut(s) 663
Bsp1286I GDGCHC 2 cut(s) 363, 667
Bsp143I GATC 3 cut(s) 598, 704, 736
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 2 cut(s) 367, 717
BspANI GGCC 3 cut(s) 47, 539, 665
BspCNI CTCAG 3 cut(s) 130, 488, 617
BspLI GGNNCC 2 cut(s) 664, 665
BspMAI CTGCAG 1 cut(s) 660
BspPI GGATC 2 cut(s) 712, 744
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 3 cut(s) 598, 704, 736
BssT1I CCWWGG 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 3 cut(s) 117, 475, 604
BstF5I GGATG 1 cut(s) 757
BstH2I RGCGCY 1 cut(s) 437
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 3 cut(s) 601, 707, 739
BstMAI GTCTC 2 cut(s) 129, 234
BstMBI GATC 3 cut(s) 598, 704, 736
BstMWI GCNNNNNNNGC 2 cut(s) 44, 515
BstSFI CTRYAG 2 cut(s) 377, 656
BstSLI GKGCMC 1 cut(s) 667
BstV1I GCAGC 2 cut(s) 22, 642
BstX2I RGATCY 1 cut(s) 736
BstYI RGATCY 1 cut(s) 736
BsuRI GGCC 3 cut(s) 47, 539, 665
BtsCI GGATG 1 cut(s) 757
BtsI GCAGTG 2 cut(s) 361, 525
BtsIMutI CAGTG 3 cut(s) 361, 525, 620
Cac8I GCNNGC 1 cut(s) 438
CfoI GCGC 1 cut(s) 436
Cfr13I GGNCC 3 cut(s) 538, 663, 664
CviAII CATG 3 cut(s) 171, 587, 776
DdeI CTNAG 3 cut(s) 117, 475, 604
DpnI GATC 3 cut(s) 600, 706, 738
DpnII GATC 3 cut(s) 598, 704, 736
DraIII CACNNNGTG 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 667
Eco47III AGCGCT 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 663
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 667
ErhI CCWWGG 1 cut(s) 48
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 3 cut(s) 174, 590, 779
FatI CATG 3 cut(s) 170, 586, 775
FauI CCCGC 1 cut(s) 710
FauNDI CATATG 1 cut(s) 384
Fnu4HI GCNGC 3 cut(s) 36, 367, 656
FokI GGATG 1 cut(s) 744
FriOI GRGCYC 1 cut(s) 667
Fsp4HI GCNGC 3 cut(s) 36, 367, 656
GlaI GCGC 1 cut(s) 435
GluI GCNGC 3 cut(s) 36, 367, 656
GsaI CCCAGC 2 cut(s) 42, 85
GsuI CTGGAG 1 cut(s) 377
HaeII RGCGCY 1 cut(s) 437
HaeIII GGCC 3 cut(s) 47, 539, 665
HhaI GCGC 1 cut(s) 436
Hin1II CATG 3 cut(s) 174, 590, 779
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HindIII AAGCTT 2 cut(s) 467, 723
HinfI GANTC 4 cut(s) 227, 257, 328, 401
HphI GGTGA 2 cut(s) 147, 236
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 6 cut(s) 165, 256, 333, 406, 478, 607
Hpy188III TCNNGA 3 cut(s) 266, 740, 761
Hpy8I GTNNAC 1 cut(s) 688
HpyAV CCTTC 4 cut(s) 159, 409, 574, 808
HpyCH4V TGCA 3 cut(s) 620, 658, 811
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 515
HpyF3I CTNAG 3 cut(s) 117, 475, 604
Hsp92II CATG 3 cut(s) 174, 590, 779
HspAI GCGC 1 cut(s) 434
Kzo9I GATC 3 cut(s) 598, 704, 736
LmnI GCTCC 5 cut(s) 358, 373, 507, 583, 639
Lsp1109I GCAGC 2 cut(s) 22, 642
LweI GCATC 2 cut(s) 304, 704
MalI GATC 3 cut(s) 600, 706, 738
MboI GATC 3 cut(s) 598, 704, 736
MboII GAAGA 2 cut(s) 281, 424
MflI RGATCY 1 cut(s) 736
MhlI GDGCHC 2 cut(s) 363, 667
MluCI AATT 7 cut(s) 320, 424, 483, 488, 608, 678, 750
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 6 cut(s) 145, 153, 520, 529, 630, 695
MseI TTAA 4 cut(s) 240, 552, 572, 677
MslI CAYNNNNRTG 4 cut(s) 175, 387, 712, 762
MwoI GCNNNNNNNGC 2 cut(s) 44, 515
NdeI CATATG 1 cut(s) 384
NdeII GATC 3 cut(s) 598, 704, 736
NlaIII CATG 3 cut(s) 174, 590, 779
NlaIV GGNNCC 2 cut(s) 664, 665
NmeAIII GCCGAG 2 cut(s) 49, 92
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PfeI GAWTC 3 cut(s) 257, 328, 401
PkrI GCNGC 3 cut(s) 37, 368, 657
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PspFI CCCAGC 2 cut(s) 38, 81
PspN4I GGNNCC 2 cut(s) 664, 665
PspOMI GGGCCC 1 cut(s) 663
PspPI GGNCC 3 cut(s) 538, 663, 664
PstI CTGCAG 1 cut(s) 660
PsuI RGATCY 1 cut(s) 736
RseI CAYNNNNRTG 4 cut(s) 175, 387, 712, 762
SaqAI TTAA 4 cut(s) 240, 552, 572, 677
SatI GCNGC 3 cut(s) 36, 367, 656
Sau3AI GATC 3 cut(s) 598, 704, 736
Sau96I GGNCC 3 cut(s) 538, 663, 664
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 2 cut(s) 363, 667
SfaNI GCATC 2 cut(s) 304, 704
SfcI CTRYAG 2 cut(s) 377, 656
SmiMI CAYNNNNRTG 4 cut(s) 175, 387, 712, 762
Sse9I AATT 7 cut(s) 320, 424, 483, 488, 608, 678, 750
SsiI CCGC 2 cut(s) 367, 717
SspI AATATT 1 cut(s) 550
StyI CCWWGG 1 cut(s) 48
TaqI TCGA 1 cut(s) 60
TasI AATT 7 cut(s) 320, 424, 483, 488, 608, 678, 750
TauI GCSGC 1 cut(s) 369
TfiI GAWTC 3 cut(s) 257, 328, 401
Tru1I TTAA 4 cut(s) 240, 552, 572, 677
Tru9I TTAA 4 cut(s) 240, 552, 572, 677
TscAI CASTG 3 cut(s) 368, 525, 627
TseI GCWGC 2 cut(s) 35, 655
TspDTI ATGAA 7 cut(s) 78, 141, 159, 356, 401, 560, 792
TspRI CASTG 3 cut(s) 368, 525, 627
XapI RAATTY 2 cut(s) 424, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.