Rh1AG259700

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000340
Physical Location & Seq
Reverse (-)
47963730 .. 47964901
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG259700.1

Sequence Viewer

Length: 258 bp
ATGATTGACCAGCTATGGCAGAGAGAAAAGCATCAGCTTCAACTAAAGAACATTGAATTGGAGAATCAGATTGATATGAAAAAGAATGAGCTAGAGCACTGCCGCAAGGAGCTACAGCATATGGTTAAAGGGCTTTCATCTGAAGAGTTTGCTGCTCATAATGAGTTGTTTGAAGGCTTGTTTACAAAAAAAAAAGACAAAACTGGAAGAAACCAACGTCTTGTATTTGCTGGTGACTCAATTGGAAGGAACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

10.11

Weight (kDa)

7.92

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 162
AgsI TTSAA 3 cut(s) 41, 56, 173
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 4 cut(s) 13, 37, 91, 112
AluI AGCT 4 cut(s) 13, 37, 91, 112
Alw21I GWGCWC 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 139
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 113
BisI GCNGC 2 cut(s) 103, 153
BlsI GCNGC 2 cut(s) 104, 154
BmiI GGNNCC 1 cut(s) 251
BmsI GCATC 1 cut(s) 40
Bse1I ACTGG 2 cut(s) 208, 253
BseNI ACTGG 2 cut(s) 208, 253
BseXI GCAGC 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 99
BspACI CCGC 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 251
BsrI ACTGG 2 cut(s) 208, 253
Bst6I CTCTTC 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 97
CviJI RGCY 6 cut(s) 13, 37, 91, 112, 133, 177
CviKI_1 RGCY 6 cut(s) 13, 37, 91, 112, 133, 177
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 162
FaiI YATR 5 cut(s) 16, 77, 120, 122, 159
FauNDI CATATG 1 cut(s) 120
Fnu4HI GCNGC 2 cut(s) 103, 153
Fsp4HI GCNGC 2 cut(s) 103, 153
FspBI CTAG 1 cut(s) 92
GluI GCNGC 2 cut(s) 103, 153
HinfI GANTC 2 cut(s) 64, 236
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 2 cut(s) 69, 142
Hpy8I GTNNAC 1 cut(s) 183
HpyAV CCTTC 2 cut(s) 167, 240
HpyCH4IV ACGT 1 cut(s) 217
HpySE526I ACGT 1 cut(s) 217
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 3 cut(s) 23, 189, 216
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 92
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 233
MboII GAAGA 2 cut(s) 155, 219
MfeI CAATTG 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 2 cut(s) 56, 240
MlyI GAGTC 1 cut(s) 230
MseI TTAA 1 cut(s) 126
MunI CAATTG 1 cut(s) 240
NdeI CATATG 1 cut(s) 120
NlaIV GGNNCC 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 2 cut(s) 104, 154
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 103, 153
SchI GAGTC 1 cut(s) 230
SduI GDGCHC 1 cut(s) 99
SetI ASST 5 cut(s) 15, 39, 93, 114, 220
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 113
SgeI CNNG 7 cut(s) 22, 104, 118, 190, 216, 233, 243
Sse9I AATT 2 cut(s) 56, 240
SsiI CCGC 1 cut(s) 103
SspMI CTAG 1 cut(s) 92
TaiI ACGT 1 cut(s) 220
TasI AATT 2 cut(s) 56, 240
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 104
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 92, 126
TspRI CASTG 1 cut(s) 104
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.