RchiOBHm_Chr5g0045041

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000340
Physical Location & Seq
Forward (+)
40660057 .. 40664105
4049 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32318

Sequence Viewer

Length: 462 bp
ATGTTGGCAGAAGAGAGAAAGCTATGGCAGAGAGAAAAGCATCAGCTTCAACTAAAGAACATTGAATTGGAGAATCAGATTGATATGAAAAAGAATGAGCTGGAGCACTGCTGCAAGGAGCTACAGCATATGAATGAGAGAGAAGAATCAGAGCAGAAGAAAGCAGAAAATCTGATAGCGCTTGCAGAAAAGAGAAAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAGGCCCAGAAGAATGTTAAAGCACTTGAACAAATGTTAAAGGAGAAGGAGCAGGAGCTTACTGATCTGTCAGAATTTTACAATGCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTACAGGGGGCCCGTAAAGAGTTAATTGATCAACACTTAAAGAGGGAGTTGCTTACATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

18.47

Weight (kDa)

5.42

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 353
AfeI AGCGCT 1 cut(s) 180
AgsI TTSAA 6 cut(s) 50, 65, 233, 238, 308, 376
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 8 cut(s) 22, 46, 100, 121, 214, 247, 337, 400
AluI AGCT 8 cut(s) 22, 46, 100, 121, 214, 247, 337, 400
Alw21I GWGCWC 1 cut(s) 108
Aor51HI AGCGCT 1 cut(s) 180
AoxI GGCC 2 cut(s) 282, 408
ApaI GGGCCC 1 cut(s) 412
ApeKI GCWGC 1 cut(s) 111
ApoI RAATTY 1 cut(s) 353
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 3 cut(s) 283, 408, 409
BaeGI GKGCMC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 412
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 98
BclI TGATCA 1 cut(s) 427
BfmI CTRYAG 2 cut(s) 122, 401
BfoI RGCGCY 1 cut(s) 182
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
BmgT120I GGNCC 3 cut(s) 283, 408, 409
BmiI GGNNCC 2 cut(s) 409, 410
BmsI GCATC 1 cut(s) 49
BpmI CTGGAG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 397
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 1 cut(s) 98
BshFI GGCC 2 cut(s) 284, 410
BsiHKAI GWGCWC 1 cut(s) 108
BsnI GGCC 2 cut(s) 284, 410
Bsp120I GGGCCC 1 cut(s) 408
Bsp1286I GDGCHC 2 cut(s) 108, 412
Bsp143I GATC 2 cut(s) 343, 427
BspANI GGCC 2 cut(s) 284, 410
BspCNI CTCAG 1 cut(s) 233
BspLI GGNNCC 2 cut(s) 409, 410
BssMI GATC 2 cut(s) 343, 427
Bst6I CTCTTC 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 220
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 2 cut(s) 346, 430
BstMBI GATC 2 cut(s) 343, 427
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstSFI CTRYAG 2 cut(s) 122, 401
BstSLI GKGCMC 1 cut(s) 412
BstV1I GCAGC 1 cut(s) 98
BsuRI GGCC 2 cut(s) 284, 410
BtsI GCAGTG 2 cut(s) 106, 270
BtsIMutI CAGTG 3 cut(s) 106, 270, 365
Cac8I GCNNGC 1 cut(s) 183
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 3 cut(s) 283, 408, 409
DdeI CTNAG 1 cut(s) 220
DpnI GATC 2 cut(s) 345, 429
DpnII GATC 2 cut(s) 343, 427
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 412
Eco47III AGCGCT 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 412
FaiI YATR 4 cut(s) 25, 86, 129, 131
FauNDI CATATG 1 cut(s) 129
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 1 cut(s) 112
GlaI GCGC 1 cut(s) 180
GluI GCNGC 1 cut(s) 112
GsuI CTGGAG 1 cut(s) 122
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 2 cut(s) 284, 410
HhaI GCGC 1 cut(s) 181
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 2 cut(s) 73, 146
Hpy188I TCNGA 5 cut(s) 78, 151, 174, 223, 352
HpyAV CCTTC 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 114, 185, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 1 cut(s) 220
HspAI GCGC 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 2 cut(s) 343, 427
LmnI GCTCC 6 cut(s) 103, 118, 252, 328, 334, 384
LpnPI CCDG 6 cut(s) 86, 245, 257, 299, 317, 389
Lsp1109I GCAGC 1 cut(s) 98
LweI GCATC 1 cut(s) 49
MalI GATC 2 cut(s) 345, 429
MboI GATC 2 cut(s) 343, 427
MboII GAAGA 4 cut(s) 23, 155, 169, 301
MhlI GDGCHC 2 cut(s) 108, 412
MluCI AATT 5 cut(s) 65, 228, 233, 353, 423
MnlI CCTC 4 cut(s) 265, 274, 375, 435
MseI TTAA 4 cut(s) 297, 317, 422, 437
MslI CAYNNNNRTG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 260
NdeI CATATG 1 cut(s) 129
NdeII GATC 2 cut(s) 343, 427
NlaIV GGNNCC 2 cut(s) 409, 410
PfeI GAWTC 2 cut(s) 73, 146
PkrI GCNGC 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 409, 410
PspOMI GGGCCC 1 cut(s) 408
PspPI GGNCC 3 cut(s) 283, 408, 409
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 4 cut(s) 297, 317, 422, 437
SatI GCNGC 1 cut(s) 112
Sau3AI GATC 2 cut(s) 343, 427
Sau96I GGNCC 3 cut(s) 283, 408, 409
SduI GDGCHC 2 cut(s) 108, 412
SetI ASST 8 cut(s) 24, 48, 102, 123, 216, 249, 339, 402
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 2 cut(s) 122, 401
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 5 cut(s) 65, 228, 233, 353, 423
TasI AATT 5 cut(s) 65, 228, 233, 353, 423
TfiI GAWTC 2 cut(s) 73, 146
Tru1I TTAA 4 cut(s) 297, 317, 422, 437
Tru9I TTAA 4 cut(s) 297, 317, 422, 437
TscAI CASTG 3 cut(s) 113, 270, 372
TseI GCWGC 1 cut(s) 111
TspDTI ATGAA 2 cut(s) 101, 146
TspRI CASTG 3 cut(s) 113, 270, 372
XapI RAATTY 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.