RLG00000002367

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000340
Physical Location & Seq
Forward (+)
32891951 .. 32895377
3427 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002367

Sequence Viewer

Length: 1215 bp
ATGAGGCTATGGAATCTGAGGACGAGGAAGGCTCCAATTGATGGTGGTGGCGGCAAGGGGTTGAAAATTGAGGAGAGAAAGGTGAATTACATGGACCTTCCCCAAAAAGAAGCCGAGTGCTGTGCTGCTGGGTTGGCCTTGGATTACTTCGATGAAAACCCACAACCACCCCAGCCCAAACGCACCAAGTGTTTCTCTTTCCCGGCTCAGCCGTCTCATATAGCCTCACTTCCTCCACCTTCATCACCAGGTTCGCTGTATCTCACATACAAGGAGAAAGAGATATGGAATGAGACAACTAGCATAGAGGGAAAGAAGGACACTTATGAACTGGAGCTAATGTTGGCAGAAGAGAGAAAGCTATGGCAGAGAGAAAAGCATCAGCTTCAACTAAAGAACATTGAATTGGAGAATCAGATTGATATGAAAAAGAATGAGCTGGAGCACTGCTGCAAGGAGCTACAGCATATGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGAGAAGGAGCAGGAGCTTACTGATCTGTCAGAATTTTACAATGCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCAGGGGGCTCGTAAAGAGTTAATTGATGGACTGAAAAATCATTCAAAAATCTATATTGGCCTGAAGACATTGGGTGATCTTGACTTGAAGGCATTTCAAGTTGCAACCAAGAGAAGATATACTGCAATAGAAGAAGCAAATGAGAGGGCAGTGGAGTTGTGCTCTGTGTGGGAGGATTATGTTGGGGATTCTAATTGGAACCCATACAAGGTTATTATGGATGAGACAGGAAAAAGAATGGACATTATTGATGAAGAAGATAAAAAATTGAAAAATTTGAAGACTGAGCTGGGGGATGATGTATACAAGGTGGTGACAACTTCGTTAATGGAATTGAATGAACATAATTCCAGTGGGAGGTATAGGATACAAGAGCTTTGGAATTTTAAAGCAGGGAGGAAGGCAACACTTAAAGAGGAAGTTGCTTACATTCTGAAGCAATGGAACGCGCTTAAAGAACACGAAGCGGAGAAGAAACTAAAAGTTAAAGGGTTTTCATCTGAAGAGTTTGCTGCTCATAATGAGTTGTTTGAAGGCTTGTTTACAAAAAGAAGAAGACAAAACTGGAAGAAACCAACGTCTTGTATTTGCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

405

Amino Acids

47.25

Weight (kDa)

6.23

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 228 - 359 1.1e-48 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 41
AccI GTMKAC 1 cut(s) 921
AccII CGCG 1 cut(s) 1067
AciI CCGC 2 cut(s) 51, 1085
AcsI RAATTY 3 cut(s) 569, 892, 1000
AcuI CTGAAG 3 cut(s) 701, 1073, 1140
AdeI CACNNNGTG 1 cut(s) 189
AfiI CCNNNNNNNGG 3 cut(s) 41, 826, 975
AjnI CCWGG 1 cut(s) 247
AjuI GAANNNNNNNTTGG 2 cut(s) 389, 421
Alw21I GWGCWC 2 cut(s) 447, 782
Alw26I GTCTC 3 cut(s) 219, 287, 836
AoxI GGCC 2 cut(s) 135, 676
ApeKI GCWGC 4 cut(s) 125, 450, 616, 1130
ApoI RAATTY 3 cut(s) 569, 892, 1000
AspLEI GCGC 1 cut(s) 1069
AspS9I GGNCC 1 cut(s) 94
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 4 cut(s) 94, 237, 704, 943
AvaII GGWCC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 628
BbsI GAAGAC 3 cut(s) 689, 905, 1180
Bbv12I GWGCWC 2 cut(s) 447, 782
BbvI GCAGC 4 cut(s) 112, 437, 603, 1117
BccI CCATC 2 cut(s) 35, 638
BceAI ACGGC 1 cut(s) 196
BcgI CGANNNNNNTGC 4 cut(s) 104, 138, 608, 642
BciT130I CCWGG 1 cut(s) 249
BciVI GTATCC 1 cut(s) 978
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 3 cut(s) 219, 287, 836
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 2 cut(s) 461, 617
BfuI GTATCC 1 cut(s) 978
BglI GCCNNNNNGGC 1 cut(s) 533
BisI GCNGC 5 cut(s) 52, 126, 451, 617, 1131
BlpI GCTNAGC 1 cut(s) 207
BlsI GCNGC 5 cut(s) 53, 127, 452, 618, 1132
Bme1390I CCNGG 2 cut(s) 203, 249
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 2 cut(s) 33, 818
BmrFI CCNGG 2 cut(s) 203, 249
BmsI GCATC 1 cut(s) 388
BpiI GAAGAC 3 cut(s) 689, 905, 1180
BplI GAGNNNNNCTC 4 cut(s) 16, 48, 764, 796
BpmI CTGGAG 2 cut(s) 353, 461
Bpu1102I GCTNAGC 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 826, 975
Bse1I ACTGG 3 cut(s) 336, 969, 1187
Bse3DI GCAATG 1 cut(s) 1064
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 2 cut(s) 844, 919
BseLI CCNNNNNNNGG 3 cut(s) 41, 826, 975
BseMI GCAATG 1 cut(s) 1064
BseMII CTCAG 4 cut(s) 8, 221, 507, 894
BseNI ACTGG 3 cut(s) 336, 969, 1187
BseRI GAGGAG 2 cut(s) 86, 613
BseXI GCAGC 4 cut(s) 112, 437, 603, 1117
BseYI CCCAGC 3 cut(s) 128, 171, 907
Bsh1236I CGCG 1 cut(s) 1067
BshFI GGCC 2 cut(s) 137, 678
BsiHKAI GWGCWC 2 cut(s) 447, 782
BsiSI CCGG 1 cut(s) 203
BslI CCNNNNNNNGG 3 cut(s) 41, 826, 975
BsmAI GTCTC 3 cut(s) 219, 287, 836
BsmBI CGTCTC 1 cut(s) 219
BsnI GGCC 2 cut(s) 137, 678
Bsp1286I GDGCHC 3 cut(s) 447, 628, 782
Bsp143I GATC 2 cut(s) 559, 694
Bsp1720I GCTNAGC 1 cut(s) 207
BspACI CCGC 2 cut(s) 51, 1085
BspANI GGCC 2 cut(s) 137, 678
BspCNI CTCAG 4 cut(s) 9, 220, 506, 895
BspFNI CGCG 1 cut(s) 1067
BspLI GGNNCC 2 cut(s) 33, 818
BspMAI CTGCAG 1 cut(s) 621
BsrDI GCAATG 1 cut(s) 1064
BsrI ACTGG 3 cut(s) 336, 969, 1187
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 2 cut(s) 559, 694
BssNAI GTATAC 1 cut(s) 922
BssT1I CCWWGG 1 cut(s) 138
Bst1107I GTATAC 1 cut(s) 922
Bst2UI CCWGG 1 cut(s) 249
Bst6I CTCTTC 2 cut(s) 345, 1116
BstDEI CTNAG 4 cut(s) 17, 207, 493, 903
BstF5I GGATG 2 cut(s) 844, 919
BstFNI CGCG 1 cut(s) 1067
BstHHI GCGC 1 cut(s) 1069
BstKTI GATC 2 cut(s) 562, 697
BstMAI GTCTC 3 cut(s) 219, 287, 836
BstMBI GATC 2 cut(s) 559, 694
BstMWI GCNNNNNNNGC 2 cut(s) 134, 533
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 2 cut(s) 201, 247
BstSFI CTRYAG 2 cut(s) 461, 617
BstUI CGCG 1 cut(s) 1067
BstV1I GCAGC 4 cut(s) 112, 437, 603, 1117
BstV2I GAAGAC 3 cut(s) 689, 905, 1180
BstZ17I GTATAC 1 cut(s) 922
BsuI GTATCC 1 cut(s) 978
BsuRI GGCC 2 cut(s) 137, 678
BtsCI GGATG 2 cut(s) 844, 919
BtsI GCAGTG 2 cut(s) 445, 774
BtsIMutI CAGTG 4 cut(s) 445, 581, 774, 976
CfoI GCGC 1 cut(s) 1069
Cfr13I GGNCC 1 cut(s) 94
CsiI ACCWGGT 1 cut(s) 247
CviAII CATG 1 cut(s) 91
DdeI CTNAG 4 cut(s) 17, 207, 493, 903
DpnI GATC 2 cut(s) 561, 696
DpnII GATC 2 cut(s) 559, 694
DraI TTTAAA 1 cut(s) 1006
DraIII CACNNNGTG 1 cut(s) 189
Eam1104I CTCTTC 2 cut(s) 345, 1116
EarI CTCTTC 2 cut(s) 345, 1116
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 628
Eco47I GGWCC 1 cut(s) 94
Eco57I CTGAAG 3 cut(s) 701, 1073, 1140
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 628
ErhI CCWWGG 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 1 cut(s) 94
FatI CATG 1 cut(s) 90
FauNDI CATATG 1 cut(s) 468
FblI GTMKAC 1 cut(s) 921
Fnu4HI GCNGC 5 cut(s) 52, 126, 451, 617, 1131
FokI GGATG 2 cut(s) 851, 926
FriOI GRGCYC 1 cut(s) 628
Fsp4HI GCNGC 5 cut(s) 52, 126, 451, 617, 1131
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 1068
GluI GCNGC 5 cut(s) 52, 126, 451, 617, 1131
GsaI CCCAGC 3 cut(s) 132, 175, 911
GsuI CTGGAG 2 cut(s) 353, 461
HaeIII GGCC 2 cut(s) 137, 678
HapII CCGG 1 cut(s) 203
HhaI GCGC 1 cut(s) 1069
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 1067
HinP1I GCGC 1 cut(s) 1067
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 3 cut(s) 13, 412, 806
HpaII CCGG 1 cut(s) 203
HphI GGTGA 4 cut(s) 94, 237, 704, 943
Hpy166II GTNNAC 2 cut(s) 922, 1161
Hpy188I TCNGA 6 cut(s) 18, 417, 496, 568, 1053, 1120
Hpy188III TCNNGA 1 cut(s) 698
Hpy8I GTNNAC 2 cut(s) 922, 1161
HpyAV CCTTC 8 cut(s) 22, 107, 249, 310, 535, 700, 1012, 1145
HpyCH4IV ACGT 1 cut(s) 1196
HpyCH4V TGCA 5 cut(s) 453, 581, 619, 722, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 533
HpyF3I CTNAG 4 cut(s) 17, 207, 493, 903
HpySE526I ACGT 1 cut(s) 1196
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 1067
Kzo9I GATC 2 cut(s) 559, 694
LmnI GCTCC 8 cut(s) 37, 334, 442, 457, 525, 544, 550, 600
Lsp1109I GCAGC 4 cut(s) 112, 437, 603, 1117
LweI GCATC 1 cut(s) 388
MabI ACCWGGT 1 cut(s) 247
MaeI CTAG 1 cut(s) 300
MaeII ACGT 1 cut(s) 1196
MaeIII GTNAC 1 cut(s) 931
MalI GATC 2 cut(s) 561, 696
MboI GATC 2 cut(s) 559, 694
MfeI CAATTG 1 cut(s) 36
MhlI GDGCHC 3 cut(s) 447, 628, 782
MseI TTAA 6 cut(s) 638, 944, 1005, 1029, 1071, 1104
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 2 cut(s) 203, 249
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 249
MvnI CGCG 1 cut(s) 1067
MwoI GCNNNNNNNGC 2 cut(s) 134, 533
NciI CCSGG 1 cut(s) 203
NdeI CATATG 1 cut(s) 468
NdeII GATC 2 cut(s) 559, 694
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 2 cut(s) 33, 818
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 931
PfeI GAWTC 3 cut(s) 13, 412, 806
PflMI CCANNNNNTGG 1 cut(s) 41
PkrI GCNGC 5 cut(s) 53, 127, 452, 618, 1132
Psp6I CCWGG 1 cut(s) 247
PspFI CCCAGC 3 cut(s) 128, 171, 907
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 33, 818
PspPI GGNCC 1 cut(s) 94
PstI CTGCAG 1 cut(s) 621
SaqAI TTAA 6 cut(s) 638, 944, 1005, 1029, 1071, 1104
SatI GCNGC 5 cut(s) 52, 126, 451, 617, 1131
Sau3AI GATC 2 cut(s) 559, 694
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 2 cut(s) 203, 249
SduI GDGCHC 3 cut(s) 447, 628, 782
SexAI ACCWGGT 1 cut(s) 247
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 2 cut(s) 461, 617
SinI GGWCC 1 cut(s) 94
SsiI CCGC 2 cut(s) 51, 1085
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 201, 247
StyI CCWWGG 1 cut(s) 138
TaiI ACGT 1 cut(s) 1199
TaqI TCGA 1 cut(s) 150
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 3 cut(s) 13, 412, 806
Tru1I TTAA 6 cut(s) 638, 944, 1005, 1029, 1071, 1104
Tru9I TTAA 6 cut(s) 638, 944, 1005, 1029, 1071, 1104
TscAI CASTG 4 cut(s) 452, 588, 774, 976
TseFI GTSAC 1 cut(s) 931
TseI GCWGC 4 cut(s) 125, 450, 616, 1130
Tsp45I GTSAC 1 cut(s) 931
TspDTI ATGAA 7 cut(s) 168, 231, 342, 440, 885, 972, 1104
TspRI CASTG 4 cut(s) 452, 588, 774, 976
Van91I CCANNNNNTGG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 3 cut(s) 569, 892, 1000
XmiI GTMKAC 1 cut(s) 921
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.