Rorug01G0463900

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000340
Physical Location & Seq
Forward (+)
55636565 .. 55637389
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0463900.1

Sequence Viewer

Length: 294 bp
ATGGATGTTAACATGGATAGCCTCAGTGTTATCACAGCTCCATTTCACATGGATAGTTTTCAGCACTTTACTCTTTACAATGATGTTCTGTACTTTTCAATACTTTTCACAGCTCTTTCCAATGATTATCTGCTATTTGTATTTGATCTGCAACATCTACCATCTCCTTTTAATGTTGATTTGTCATCTATCAATCTGTCGGCCAGAGTTTCAAATTGGATTGAAGTTTGCGTAGGCTTTAGAATTTCACCAGCCACTGTTGAGCTTGAACCAGACCAAGCATTACCCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.03

Weight (kDa)

4.1

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 1 cut(s) 243
AfaI GTAC 1 cut(s) 92
AgsI TTSAA 4 cut(s) 99, 213, 224, 269
AluBI AGCT 3 cut(s) 38, 113, 265
AluI AGCT 3 cut(s) 38, 113, 265
AlwNI CAGNNNCTG 1 cut(s) 257
AoxI GGCC 1 cut(s) 201
ApoI RAATTY 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 240
BccI CCATC 1 cut(s) 169
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 37
BshFI GGCC 1 cut(s) 203
BsnI GGCC 1 cut(s) 203
Bsp143I GATC 1 cut(s) 145
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 36
BssMI GATC 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 31, 255
CaiI CAGNNNCTG 1 cut(s) 257
Csp6I GTAC 1 cut(s) 91
CviAII CATG 3 cut(s) 13, 49, 289
CviJI RGCY 7 cut(s) 21, 38, 113, 203, 237, 254, 265
CviKI_1 RGCY 7 cut(s) 21, 38, 113, 203, 237, 254, 265
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 201
FaeI CATG 3 cut(s) 16, 52, 292
FaiI YATR 3 cut(s) 14, 50, 290
FatI CATG 3 cut(s) 12, 48, 288
FokI GGATG 1 cut(s) 17
HaeIII GGCC 1 cut(s) 203
Hin1II CATG 3 cut(s) 16, 52, 292
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HpaI GTTAAC 1 cut(s) 10
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 1 cut(s) 151
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 3 cut(s) 16, 52, 292
KspAI GTTAAC 1 cut(s) 10
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 3 cut(s) 217, 264, 285
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MluCI AATT 2 cut(s) 214, 243
MnlI CCTC 1 cut(s) 32
MseI TTAA 2 cut(s) 9, 171
NdeII GATC 1 cut(s) 145
NlaIII CATG 3 cut(s) 16, 52, 292
PstNI CAGNNNCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 9, 171
Sau3AI GATC 1 cut(s) 145
SetI ASST 3 cut(s) 40, 115, 267
SgeI CNNG 7 cut(s) 25, 61, 216, 263, 278, 284, 290
Sse9I AATT 2 cut(s) 214, 243
TaaI ACNGT 1 cut(s) 259
TasI AATT 2 cut(s) 214, 243
TatI WGTACW 1 cut(s) 90
Tru1I TTAA 2 cut(s) 9, 171
Tru9I TTAA 2 cut(s) 9, 171
TscAI CASTG 2 cut(s) 31, 262
TspRI CASTG 2 cut(s) 31, 262
XapI RAATTY 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.