Rh5CG464000

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000340
Physical Location & Seq
Forward (+)
64659325 .. 64660123
799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG464000.1

Sequence Viewer

Length: 402 bp
ATGGGAGAGCTTGACAGCAAACCATTTCAGACTGCATGCAAGAGAAAATATAATACAGAAGAAGCAGATGACCAGGCAGCAGCACTATGTTCTCTATGGGAGAATTATATTAAGGATTCAAGCTGGCATCCATTCAAAACTAGCAAGGATTCCTTTGGACATTGTAAGGAGATTATTGATGAAGAAGATGAAAAATTGAAAAAGTTAAAGAACGAGTTTGGTGCTGAAGTTCATCTGGCTGTGTCAACTGCTTTGCTGGAATTGAATGAGTATAATCCCAGTGGTAGGTATGCACTTAAAGAACTATGGAACTTTAATCAAGATAGAAGGGCATCATTAAAAGAGGGAATATTGCATCTCCTGAAGCAGTTGAAACTGCAAAAGAGGAGAAGAACCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.5

Weight (kDa)

7.71

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 1 - 130 8.3e-54 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 246, 383
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 5 cut(s) 120, 136, 199, 265, 373
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 2 cut(s) 10, 123
AluI AGCT 2 cut(s) 10, 123
ApeKI GCWGC 2 cut(s) 77, 80
BbvI GCAGC 2 cut(s) 89, 92
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 1 cut(s) 74
BfaI CTAG 1 cut(s) 141
BisI GCNGC 2 cut(s) 78, 81
BlsI GCNGC 2 cut(s) 79, 82
Bme1390I CCNGG 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 273
BmsI GCATC 3 cut(s) 136, 341, 364
BmuI ACTGGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 400
BseXI GCAGC 2 cut(s) 89, 92
BslI CCNNNNNNNGG 1 cut(s) 285
BspHI TCATGA 1 cut(s) 398
BsrI ACTGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 37, 125
BstF5I GGATG 1 cut(s) 127
BstNI CCWGG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 89, 92
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 37, 125
CciI TCATGA 1 cut(s) 398
CviAII CATG 2 cut(s) 36, 399
CviJI RGCY 3 cut(s) 10, 123, 239
CviKI_1 RGCY 3 cut(s) 10, 123, 239
Eco57I CTGAAG 2 cut(s) 246, 383
EcoRII CCWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 39, 402
FaiI YATR 9 cut(s) 37, 51, 88, 97, 108, 273, 291, 307, 400
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 2 cut(s) 35, 398
Fnu4HI GCNGC 2 cut(s) 78, 81
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 78, 81
FspBI CTAG 1 cut(s) 141
GluI GCNGC 2 cut(s) 78, 81
Hin1II CATG 2 cut(s) 39, 402
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HinfI GANTC 2 cut(s) 116, 149
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 3 cut(s) 320, 361, 399
Hpy8I GTNNAC 1 cut(s) 246
HpyAV CCTTC 1 cut(s) 321
HpyCH4V TGCA 5 cut(s) 35, 39, 293, 355, 379
Hsp92II CATG 2 cut(s) 39, 402
LpnPI CCDG 7 cut(s) 59, 86, 109, 221, 242, 292, 374
Lsp1109I GCAGC 2 cut(s) 89, 92
LweI GCATC 3 cut(s) 136, 341, 364
MaeI CTAG 1 cut(s) 141
MboII GAAGA 4 cut(s) 71, 194, 197, 402
MluCI AATT 3 cut(s) 103, 194, 260
MnlI CCTC 2 cut(s) 337, 378
MseI TTAA 5 cut(s) 111, 206, 297, 315, 338
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
NlaIII CATG 2 cut(s) 39, 402
NspI RCATGY 1 cut(s) 39
PaeI GCATGC 1 cut(s) 39
PagI TCATGA 1 cut(s) 398
PfeI GAWTC 2 cut(s) 116, 149
PkrI GCNGC 2 cut(s) 79, 82
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
SaqAI TTAA 5 cut(s) 111, 206, 297, 315, 338
SatI GCNGC 2 cut(s) 78, 81
ScrFI CCNGG 1 cut(s) 74
SetI ASST 4 cut(s) 12, 125, 290, 398
SfaNI GCATC 3 cut(s) 136, 341, 364
SphI GCATGC 1 cut(s) 39
Sse9I AATT 3 cut(s) 103, 194, 260
SspI AATATT 1 cut(s) 351
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 72
TasI AATT 3 cut(s) 103, 194, 260
TfiI GAWTC 2 cut(s) 116, 149
Tru1I TTAA 5 cut(s) 111, 206, 297, 315, 338
Tru9I TTAA 5 cut(s) 111, 206, 297, 315, 338
TscAI CASTG 1 cut(s) 286
TseI GCWGC 2 cut(s) 77, 80
TspDTI ATGAA 3 cut(s) 195, 204, 221
TspRI CASTG 1 cut(s) 286
XceI RCATGY 1 cut(s) 39
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.