Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000340

Physical Location & Seq

Genomic Coordinates Reverse (-)

71382214 .. 71383954

Gene Structure 1741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035772

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTTTTGTAGAACAGGGTCAAGCCTGTTGAAATCTGAAGCCCAAAAGCTTGATCATAAGAAAGTGCTTGACCAGAGCGAGGCTCAGAAGAAAGAGCTTGAGCAAAGAGAAAACGAGAAGAGAGATCGAAATGAAAAGGCCGGCTTAGAGACAAAGAAGGCTGATGAACTGGTGTTATGGTTGGGTGAAGAACGAAAGAAAGAAAATAATATACTTCACAGGAAAGTTACCGAGTTGGAGAAACAGCTAGAGAAAAAGGAAGATGAATTGGAGGATATTGAAGCACTTAACCAAGTACTTATTGTCGAGGGGAATAACAATGCTGAACTACAGGAGGCTCGTCATGCGTTAATTATGGGATTGAAGGAATCAGCAAGCAACACTATTGGTGTGAAGATAATGGGAGATCTTGAGAAACAGCCATTTGTTGCTGCAACCAAGAGAATCAACAATTCTAGAAAATATAGAAAGAGAGCTGCTGATAATACGGCTGCAGACCTATGCTCTCTTTGGGAGCAATATCTTAGAGATCCGAATTGGCATCCATTCAAAATTATCACTGATAAAGATGGAAAGACACTGGAAGTTGTTGATGAAGATGATGAAAAATTGGTGGACTTGAAGACAGAATTTGGTGATGAAGTTTTCGAAGCTGTGAAAACTGCCCTGGCTGAATTGAACGAGTATAATCCAACTGGCAGATATCCAGTACTAGAGCTTTGGAATTTCAGGGAAAACAGGAAGGCGACGTTAGCAGAGGGTGTATCCCATCTAATGAACCAGATGAAACCTAATAAGCGGAGTAATGTTCGTCCAACCTCTGGTTGGAAGCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

280

Amino Acids

32.23

Weight (kDa)

5.92

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	132 - 267	4.8e-50	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica	Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis	pycom01g15630
rosa_chinensis	RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata	RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora	Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii	Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa	Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha	Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana	Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	821
AciI	CCGC	1 cut(s)	799
AclWI	GGATC	1 cut(s)	524
AcsI	RAATTY	2 cut(s)	629, 724
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	297, 711
AfiI	CCNNNNNNNGG	3 cut(s)	79, 821, 825
AgsI	TTSAA	6 cut(s)	31, 281, 364, 550, 622, 679
AjnI	CCWGG	1 cut(s)	666
AluBI	AGCT	6 cut(s)	49, 97, 247, 476, 653, 718
AluI	AGCT	6 cut(s)	49, 97, 247, 476, 653, 718
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	524
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	3 cut(s)	431, 476, 491
ApoI	RAATTY	2 cut(s)	629, 724
AsuHPI	GGTGA	2 cut(s)	197, 647
AsuII	TTCGAA	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	629
BbvI	GCAGC	3 cut(s)	418, 463, 478
BccI	CCATC	2 cut(s)	563, 777
BceAI	ACGGC	1 cut(s)	504
BciT130I	CCWGG	1 cut(s)	668
BciVI	GTATCC	1 cut(s)	775
BclI	TGATCA	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	3 cut(s)	248, 456, 713
BfmI	CTRYAG	2 cut(s)	329, 492
BfuI	GTATCC	1 cut(s)	775
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	3 cut(s)	432, 477, 492
BlsI	GCNGC	3 cut(s)	433, 478, 493
BmcAI	AGTACT	2 cut(s)	297, 711
Bme1390I	CCNGG	1 cut(s)	668
BmrFI	CCNGG	1 cut(s)	668
BmsI	GCATC	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	629
BplI	GAGNNNNNCTC	2 cut(s)	67, 99
Bpu14I	TTCGAA	1 cut(s)	648
BpuEI	CTTGAG	2 cut(s)	119, 431
BsaJI	CCNNGG	1 cut(s)	666
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 821, 825
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	4 cut(s)	174, 585, 700, 707
BseBI	CCWGG	1 cut(s)	668
BseDI	CCNNGG	1 cut(s)	666
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	3 cut(s)	79, 821, 825
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	4 cut(s)	174, 585, 700, 707
BseXI	GCAGC	3 cut(s)	418, 463, 478
BshFI	GGCC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	3 cut(s)	79, 821, 825
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	140
Bsp119I	TTCGAA	1 cut(s)	648
Bsp143I	GATC	4 cut(s)	52, 124, 406, 529
BspACI	CCGC	1 cut(s)	799
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	1 cut(s)	524
BspT104I	TTCGAA	1 cut(s)	648
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	4 cut(s)	174, 585, 700, 707
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	666
BssMI	GATC	4 cut(s)	52, 124, 406, 529
Bst2UI	CCWGG	1 cut(s)	668
Bst6I	CTCTTC	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	648
BstC8I	GCNNGC	2 cut(s)	142, 376
BstDEI	CTNAG	3 cut(s)	84, 145, 524
BstF5I	GGATG	1 cut(s)	541
BstKTI	GATC	4 cut(s)	55, 127, 409, 532
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	4 cut(s)	52, 124, 406, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 752
BstNI	CCWGG	1 cut(s)	668
BstSCI	CCNGG	1 cut(s)	666
BstSFI	CTRYAG	2 cut(s)	329, 492
BstV1I	GCAGC	3 cut(s)	418, 463, 478
BstV2I	GAAGAC	1 cut(s)	629
BstX2I	RGATCY	2 cut(s)	406, 529
BstYI	RGATCY	2 cut(s)	406, 529
BsuI	GTATCC	1 cut(s)	775
BsuRI	GGCC	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	541
BtsIMutI	CAGTG	2 cut(s)	558, 578
Cac8I	GCNNGC	2 cut(s)	142, 376
Cfr10I	RCCGGY	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	296, 710
CviAII	CATG	1 cut(s)	344
CviQI	GTAC	2 cut(s)	296, 710
DdeI	CTNAG	3 cut(s)	84, 145, 524
DpnI	GATC	4 cut(s)	54, 126, 408, 531
DpnII	GATC	4 cut(s)	52, 124, 406, 529
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco32I	GATATC	1 cut(s)	704
Eco57I	CTGAAG	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	666
EcoRV	GATATC	1 cut(s)	704
FaeI	CATG	1 cut(s)	347
FaiI	YATR	8 cut(s)	57, 178, 212, 345, 356, 465, 502, 687
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FatI	CATG	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	3 cut(s)	432, 477, 492
FokI	GGATG	1 cut(s)	528
Fsp4HI	GCNGC	3 cut(s)	432, 477, 492
FspBI	CTAG	3 cut(s)	248, 456, 713
GluI	GCNGC	3 cut(s)	432, 477, 492
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	141
Hin1II	CATG	1 cut(s)	347
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	2 cut(s)	368, 444
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	2 cut(s)	197, 647
Hpy166II	GTNNAC	1 cut(s)	616
Hpy188I	TCNGA	3 cut(s)	37, 87, 534
Hpy188III	TCNNGA	2 cut(s)	410, 456
Hpy8I	GTNNAC	1 cut(s)	616
Hpy99I	CGWCG	1 cut(s)	751
HpyAV	CCTTC	3 cut(s)	151, 358, 736
HpyCH4IV	ACGT	1 cut(s)	749
HpyCH4V	TGCA	2 cut(s)	434, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 752
HpyF3I	CTNAG	3 cut(s)	84, 145, 524
HpySE526I	ACGT	1 cut(s)	749
Hsp92II	CATG	1 cut(s)	347
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	52, 124, 406, 529
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	3 cut(s)	418, 463, 478
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	3 cut(s)	248, 456, 713
MaeII	ACGT	1 cut(s)	749
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	4 cut(s)	54, 126, 408, 531
MboI	GATC	4 cut(s)	52, 124, 406, 529
MboII	GAAGA	7 cut(s)	100, 130, 200, 272, 406, 608, 634
MflI	RGATCY	2 cut(s)	406, 529
MluCI	AATT	9 cut(s)	266, 351, 451, 535, 552, 608, 629, 674, 724
MmeI	TCCRAC	4 cut(s)	216, 716, 806, 839
MnlI	CCTC	6 cut(s)	73, 265, 301, 328, 751, 829
MroNI	GCCGGC	1 cut(s)	140
MseI	TTAA	2 cut(s)	288, 350
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	668
MvaI	CCWGG	1 cut(s)	668
MwoI	GCNNNNNNNGC	2 cut(s)	344, 752
NaeI	GCCGGC	1 cut(s)	142
NdeII	GATC	4 cut(s)	52, 124, 406, 529
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	1 cut(s)	347
NspV	TTCGAA	1 cut(s)	648
PdiI	GCCGGC	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	368, 444
PflMI	CCANNNNNTGG	1 cut(s)	821
PkrI	GCNGC	3 cut(s)	433, 478, 493
Psp6I	CCWGG	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	666
PstI	CTGCAG	1 cut(s)	496
PsuI	RGATCY	2 cut(s)	406, 529
RsaI	GTAC	2 cut(s)	297, 711
RsaNI	GTAC	2 cut(s)	296, 710
SaqAI	TTAA	2 cut(s)	288, 350
SatI	GCNGC	3 cut(s)	432, 477, 492
Sau3AI	GATC	4 cut(s)	52, 124, 406, 529
ScaI	AGTACT	2 cut(s)	297, 711
ScrFI	CCNGG	1 cut(s)	668
SfaNI	GCATC	1 cut(s)	550
SfcI	CTRYAG	2 cut(s)	329, 492
SfuI	TTCGAA	1 cut(s)	648
SmlI	CTYRAG	2 cut(s)	98, 410
SmoI	CTYRAG	2 cut(s)	98, 410
Sse9I	AATT	9 cut(s)	266, 351, 451, 535, 552, 608, 629, 674, 724
SsiI	CCGC	1 cut(s)	799
SspMI	CTAG	3 cut(s)	248, 456, 713
StyD4I	CCNGG	1 cut(s)	666
TaiI	ACGT	1 cut(s)	752
TaqI	TCGA	3 cut(s)	127, 306, 648
TasI	AATT	9 cut(s)	266, 351, 451, 535, 552, 608, 629, 674, 724
TatI	WGTACW	2 cut(s)	295, 709
TfiI	GAWTC	2 cut(s)	368, 444
Tru1I	TTAA	2 cut(s)	288, 350
Tru9I	TTAA	2 cut(s)	288, 350
TscAI	CASTG	2 cut(s)	565, 585
TseI	GCWGC	3 cut(s)	431, 476, 491
TspDTI	ATGAA	8 cut(s)	147, 180, 279, 609, 618, 654, 791, 800
TspRI	CASTG	2 cut(s)	565, 585
Van91I	CCANNNNNTGG	1 cut(s)	821
XapI	RAATTY	2 cut(s)	629, 724
XbaI	TCTAGA	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	822
XspI	CTAG	3 cut(s)	248, 456, 713
ZrmI	AGTACT	2 cut(s)	297, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.