Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000340

Physical Location & Seq

Genomic Coordinates Forward (+)

15419998 .. 15421518

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g15630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGGGATGACGGTGATGTTGAAGTGCTGAAAAAGGTGGACAACATGATCAAAGGCTTGAGAGAAAAGGAAGAATCACTAGAAGACTTAGAAGCTTTAAATCAAACTTTGATCGTAAAGGAGCGCAAAAGCAATGATGAGCTGCAGGAAGCCCGGAGGGAATTGATTAATGGATTGAAGGAAATATCAAGTAGTGCACAAATTGGTGTTAGGAGAATGGGTGAGCTTGACAGTAAACCGTTCCAAGAAGCACTGAAGAGAAAGTATAATGAGGAAGAAGCAGAAGAGAAGGCAATGGAGCTGTGCTCCTTGTGGGTAGAATACCTAAAGGACCCAGAATGGCATCCTTTCAAAGTTACTACGGTCGACGGGAAGCATAAGGAAGTTATATCCGTCGAGGATGAAAAATTGAAAGATTTGAAGAAAGAACTGGGTGAGGAAGTGTGCAACGCTGTAATATCAGCTTTAACAGAGATCAATGAATACAACCCTAGTGGCAGGTACATAACGTCGGAATTGTGGAACTACAAAGAGGGGCGAAGGGCTTCACTAAAAGAAGGAGTTGCATTTATTCTGAATCAGTGGAAAACAAAGAAGCGGCGGATGGAGCTGGATTACTTCCATCTGACCAGCTTAATGGATCATCCTCCCAACACGGAATTGCTGAATAAGTGGCTAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010569 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0046686 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1902679 GO:1903506 GO:1903507 GO:1905348 GO:1990904 GO:2000112 GO:2000113 GO:2000779 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

228

Amino Acids

26.47

Weight (kDa)

5.16

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	71 - 201	2.1e-60	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica	Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis	pycom01g15630
rosa_chinensis	RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata	RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora	Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii	Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa	Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha	Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana	Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	489
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	2 cut(s)	598, 601
AclWI	GGATC	1 cut(s)	648
AcuI	CTGAAG	1 cut(s)	275
AfaI	GTAC	1 cut(s)	503
AgsI	TTSAA	5 cut(s)	23, 178, 352, 412, 421
AluBI	AGCT	7 cut(s)	95, 142, 226, 301, 464, 610, 633
AluI	AGCT	7 cut(s)	95, 142, 226, 301, 464, 610, 633
Alw21I	GWGCWC	2 cut(s)	199, 308
Alw44I	GTGCAC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	648
ApaLI	GTGCAC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	142
AseI	ATTAAT	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	544
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	331
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	3 cut(s)	26, 233, 446
AvaII	GGWCC	1 cut(s)	331
BaeGI	GKGCMC	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	2 cut(s)	199, 308
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	2 cut(s)	598, 630
BclI	TGATCA	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	154
BfaI	CTAG	2 cut(s)	80, 492
BfmI	CTRYAG	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	489
BisI	GCNGC	2 cut(s)	143, 599
BlsI	GCNGC	2 cut(s)	144, 600
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	154
BmrI	ACTGGG	1 cut(s)	440
BmsI	GCATC	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	90
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpuEI	CTTGAG	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bse1I	ACTGG	1 cut(s)	435
Bse3DI	GCAATG	2 cut(s)	139, 300
BseGI	GGATG	5 cut(s)	13, 343, 406, 609, 643
BseMI	GCAATG	2 cut(s)	139, 300
BseNI	ACTGG	1 cut(s)	435
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	366
BsiEI	CGRYCG	1 cut(s)	366
BsiHKAI	GWGCWC	2 cut(s)	199, 308
BsiSI	CCGG	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	199, 308
Bsp143I	GATC	4 cut(s)	48, 111, 474, 640
BspACI	CCGC	2 cut(s)	598, 601
BspLI	GGNNCC	1 cut(s)	333
BspMAI	CTGCAG	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	489
BspPI	GGATC	1 cut(s)	648
BsrDI	GCAATG	2 cut(s)	139, 300
BsrI	ACTGG	1 cut(s)	435
BssMI	GATC	4 cut(s)	48, 111, 474, 640
Bst4CI	ACNGT	4 cut(s)	14, 233, 240, 364
Bst6I	CTCTTC	2 cut(s)	251, 279
BstDEI	CTNAG	1 cut(s)	88
BstF5I	GGATG	5 cut(s)	13, 343, 406, 609, 643
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	4 cut(s)	51, 114, 477, 643
BstMBI	GATC	4 cut(s)	48, 111, 474, 640
BstMCI	CGRYCG	1 cut(s)	366
BstMWI	GCNNNNNNNGC	1 cut(s)	607
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	143
BstSLI	GKGCMC	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	90
BstXI	CCANNNNNNTGG	1 cut(s)	637
BtsCI	GGATG	5 cut(s)	13, 343, 406, 609, 643
BtsIMutI	CAGTG	2 cut(s)	251, 587
BveI	ACCTGC	1 cut(s)	489
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	502
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	1 cut(s)	46
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	4 cut(s)	50, 113, 476, 642
DpnII	GATC	4 cut(s)	48, 111, 474, 640
DraI	TTTAAA	1 cut(s)	99
Eam1104I	CTCTTC	2 cut(s)	251, 279
EarI	CTCTTC	2 cut(s)	251, 279
EciI	GGCGGA	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	331
FaeI	CATG	1 cut(s)	49
FaiI	YATR	5 cut(s)	47, 267, 378, 389, 506
FatI	CATG	1 cut(s)	45
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	143, 599
FokI	GGATG	5 cut(s)	20, 330, 413, 616, 630
Fsp4HI	GCNGC	2 cut(s)	143, 599
FspBI	CTAG	2 cut(s)	80, 492
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	2 cut(s)	143, 599
HapII	CCGG	1 cut(s)	154
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	2 cut(s)	74, 577
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	3 cut(s)	26, 233, 446
Hpy166II	GTNNAC	4 cut(s)	40, 197, 236, 367
Hpy188I	TCNGA	3 cut(s)	514, 576, 627
Hpy8I	GTNNAC	4 cut(s)	40, 197, 236, 367
Hpy99I	CGWCG	3 cut(s)	371, 398, 514
HpyAV	CCTTC	4 cut(s)	172, 283, 534, 551
HpyCH4III	ACNGT	4 cut(s)	14, 233, 240, 364
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	4 cut(s)	145, 197, 447, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	607
HpyF3I	CTNAG	1 cut(s)	88
HpySE526I	ACGT	1 cut(s)	509
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	4 cut(s)	48, 111, 474, 640
LmnI	GCTCC	4 cut(s)	121, 298, 311, 607
LpnPI	CCDG	7 cut(s)	131, 167, 348, 416, 484, 596, 643
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	80, 492
MaeII	ACGT	1 cut(s)	509
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	4 cut(s)	50, 113, 476, 642
MboI	GATC	4 cut(s)	48, 111, 474, 640
MboII	GAAGA	6 cut(s)	83, 95, 268, 287, 296, 433
MhlI	GDGCHC	2 cut(s)	199, 308
MluCI	AATT	5 cut(s)	161, 201, 407, 515, 659
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	6 cut(s)	150, 265, 391, 430, 526, 657
MroXI	GAANNNNTTC	1 cut(s)	544
MseI	TTAA	4 cut(s)	98, 168, 467, 635
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	1 cut(s)	607
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	4 cut(s)	48, 111, 474, 640
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	544
PfeI	GAWTC	2 cut(s)	74, 577
PkrI	GCNGC	2 cut(s)	144, 600
PpuMI	RGGWCCY	1 cut(s)	331
PshBI	ATTAAT	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	331
PspPPI	RGGWCCY	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	147
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
SalI	GTCGAC	1 cut(s)	365
SaqAI	TTAA	4 cut(s)	98, 168, 467, 635
SatI	GCNGC	2 cut(s)	143, 599
Sau3AI	GATC	4 cut(s)	48, 111, 474, 640
Sau96I	GGNCC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	2 cut(s)	199, 308
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	5 cut(s)	161, 201, 407, 515, 659
SsiI	CCGC	2 cut(s)	598, 601
SspMI	CTAG	2 cut(s)	80, 492
StyD4I	CCNGG	1 cut(s)	152
TaaI	ACNGT	4 cut(s)	14, 233, 240, 364
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	2 cut(s)	366, 396
TasI	AATT	5 cut(s)	161, 201, 407, 515, 659
TauI	GCSGC	1 cut(s)	601
TfiI	GAWTC	2 cut(s)	74, 577
Tru1I	TTAA	4 cut(s)	98, 168, 467, 635
Tru9I	TTAA	4 cut(s)	98, 168, 467, 635
TscAI	CASTG	2 cut(s)	258, 587
TseI	GCWGC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	417, 495
TspGWI	ACGGA	2 cut(s)	382, 671
TspRI	CASTG	2 cut(s)	258, 587
VneI	GTGCAC	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	331
VspI	ATTAAT	1 cut(s)	168
XmiI	GTMKAC	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	544
XspI	CTAG	2 cut(s)	80, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.