Rorug02G0276400

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000340
Physical Location & Seq
Forward (+)
29728834 .. 29729893
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0276400.1

Sequence Viewer

Length: 495 bp
ATGGCGCCGAGAGTTGAGGTTAGTGACATCACAATGCCCCCGTGGAGCATCAACCTAATCGGGTTAGGGGATGAGTATAGATTCAATCACATCGACATTCCTCAATGCATCACCTACATTTACATGTTAGTTTCTCCTCATGTTAAAGCACCAATTTGGGTCGTCAGCCTCATTATCAATGCTTGCACTTTGTACAATCATACCAATTTTGGCAATGGGCATCACAAAAGCGTGCAGGAAAAGCGCGTTGTAAGCAAACAAGAAGGGATGGTAACTGGCTTTTCTTCATTCACTGATACAAAAGGGGATACAAGCAGCGAGGGTAAGAATATTGATGCTATGTTAGATAGTTCAAGTGATGATGATGGGGATGTATCTAACCGAGAGTGTGTTTTTGGTTGGTTGCCTACTAATACTGCGGGTTGGACAATAGCCACAAGGAAAAGGGATGACACATCTCATTCCCCTACTGCTGATGGCATTCCAGGCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

164

Amino Acids

18.04

Weight (kDa)

5.2

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 246
AciI CCGC 1 cut(s) 419
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 2 cut(s) 85, 354
AjnI CCWGG 1 cut(s) 484
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 1 cut(s) 315
AspLEI GCGC 2 cut(s) 7, 246
AspS9I GGNCC 1 cut(s) 488
AsuHPI GGTGA 1 cut(s) 103
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 327
BccI CCATC 3 cut(s) 262, 359, 470
BciT130I CCWGG 1 cut(s) 486
BciVI GTATCC 1 cut(s) 301
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 301
BisI GCNGC 1 cut(s) 316
BlsI GCNGC 1 cut(s) 317
Bme1390I CCNGG 1 cut(s) 486
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 2 cut(s) 6, 490
BmrFI CCNGG 1 cut(s) 486
BmsI GCATC 4 cut(s) 57, 117, 229, 325
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 1 cut(s) 41
BseGI GGATG 4 cut(s) 76, 273, 376, 454
BseMI GCAATG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 327
BsgI GTGCAG 1 cut(s) 254
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 489
BshNI GGYRCC 1 cut(s) 4
BsmI GAATGC 1 cut(s) 480
BsnI GGCC 1 cut(s) 489
Bsp1407I TGTACA 1 cut(s) 192
BspACI CCGC 1 cut(s) 419
BspANI GGCC 1 cut(s) 489
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 6, 490
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 220
BsrGI TGTACA 1 cut(s) 192
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 41
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 486
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 184, 233
BstDSI CCRYGG 1 cut(s) 41
BstF5I GGATG 4 cut(s) 76, 273, 376, 454
BstFNI CGCG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 246
BstMWI GCNNNNNNNGC 3 cut(s) 241, 252, 486
BstNI CCWGG 1 cut(s) 486
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 484
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 327
BsuI GTATCC 1 cut(s) 301
BsuRI GGCC 1 cut(s) 489
BtgI CCRYGG 1 cut(s) 41
BtsCI GGATG 4 cut(s) 76, 273, 376, 454
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 2 cut(s) 184, 233
CfoI GCGC 2 cut(s) 7, 246
Cfr13I GGNCC 1 cut(s) 488
Csp6I GTAC 1 cut(s) 193
CviAII CATG 2 cut(s) 124, 140
CviJI RGCY 4 cut(s) 168, 279, 434, 489
CviKI_1 RGCY 4 cut(s) 168, 279, 434, 489
CviQI GTAC 1 cut(s) 193
DinI GGCGCC 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 488
EcoRII CCWGG 1 cut(s) 484
EcoT22I ATGCAT 1 cut(s) 110
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 2 cut(s) 127, 143
FaiI YATR 5 cut(s) 78, 125, 141, 201, 341
FatI CATG 2 cut(s) 123, 139
FauI CCCGC 1 cut(s) 412
Fnu4HI GCNGC 1 cut(s) 316
FokI GGATG 4 cut(s) 83, 280, 383, 461
Fsp4HI GCNGC 1 cut(s) 316
GlaI GCGC 2 cut(s) 6, 245
GluI GCNGC 1 cut(s) 316
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 489
HhaI GCGC 2 cut(s) 7, 246
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 127, 143
Hin6I GCGC 2 cut(s) 5, 244
HinP1I GCGC 2 cut(s) 5, 244
HinfI GANTC 1 cut(s) 81
HphI GGTGA 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 257
HpyCH4V TGCA 3 cut(s) 108, 186, 235
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 252, 486
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 127, 143
HspAI GCGC 2 cut(s) 5, 244
KasI GGCGCC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 3 cut(s) 221, 261, 471
Lsp1109I GCAGC 1 cut(s) 327
LweI GCATC 4 cut(s) 57, 117, 229, 325
MaeIII GTNAC 2 cut(s) 23, 271
MboII GAAGA 1 cut(s) 276
MluCI AATT 2 cut(s) 153, 205
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 404
MnlI CCTC 5 cut(s) 10, 111, 147, 179, 313
Mph1103I ATGCAT 1 cut(s) 110
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 2 cut(s) 32, 122
MspR9I CCNGG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 480
MvaI CCWGG 1 cut(s) 486
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 3 cut(s) 241, 252, 486
NarI GGCGCC 1 cut(s) 5
NlaIII CATG 2 cut(s) 127, 143
NlaIV GGNNCC 2 cut(s) 6, 490
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 23
NsiI ATGCAT 1 cut(s) 110
NspI RCATGY 1 cut(s) 127
PciI ACATGT 1 cut(s) 123
PctI GAATGC 1 cut(s) 480
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 1 cut(s) 317
PluTI GGCGCC 1 cut(s) 8
PscI ACATGT 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 2 cut(s) 6, 490
PspPI GGNCC 1 cut(s) 488
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 2 cut(s) 32, 122
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 316
Sau96I GGNCC 1 cut(s) 488
ScrFI CCNGG 1 cut(s) 486
SetI ASST 3 cut(s) 21, 57, 116
SfaNI GCATC 4 cut(s) 57, 117, 229, 325
SfoI GGCGCC 1 cut(s) 6
SmiMI CAYNNNNRTG 2 cut(s) 32, 122
Sse9I AATT 2 cut(s) 153, 205
SsiI CCGC 1 cut(s) 419
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 484
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 153, 205
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 1 cut(s) 315
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 276
TspRI CASTG 1 cut(s) 298
XceI RCATGY 1 cut(s) 127
Zsp2I ATGCAT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.