Rorug01G0464200

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000340
Physical Location & Seq
Forward (+)
55666520 .. 55670413
3894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0464200.1

Sequence Viewer

Length: 942 bp
ATGGCGATAATCTCCGATATCCAAGAGGAGCAGCAACAGAGCTCAGCGCAAGCCAAATCGGCGTCGGCGTCGGCGTCGGCTTCGGCGTCGTCGTCGGGGGCGAGAGTGGGAGCGACCTCGTTTAGCACGAAGTTCGATCGGAACAACACGTCGGGGTTTCTGGAGAAGGCGTTGGAGTTTCTGGCGAAGGAGAGCGACTTCATGAGGCGGCCGACGGCGGAGAGGGATCTGGTGGCGATATTCAAGGCGGTGAGGGAGAAGGAGAGGAAGAAGATGGAGGAGGAGAGGAAGAAGAGGTGGGCGGCGGAGGAGGAGAAGAAGAAGAAGGAGGCGGAGGTCAAGGCCAAGGAGGAGCCCAAGGCGGAGCCCAAGGTGGTGGAGGAGAAGAAGGAGAAGGAGGTGGAGGTGGAGGAGAAGAGTGGCAAGAGAGTTCCAAACAAAGGGAATGGGCTTGATATGGAGAAGTACTCATGGACCCAGAGTCTGCAGGAGGTTAATATAATCATTCCAGTGCCTGCTGGAACTAAATCAAGGGATATTGTTTATGAGGCAAAGAAGAACCGTCTGAAGTTTGGACTGAAGGGTCAGCCTCTTATAATTGATGGGGAGCTCTATCAGTCTATCAAGCCTGATGATTGCTTATGGAGCATAGAGGATCAAACTGCTGTCTCTATTCTCCTGACCAAACACAACCAACTGGAGTGGTGGAAGGCTCTGCTGAAAGGTGAACCTGAAATAGACACTCAGAAAGTTGAACCGGAGCCAAGCAAATTGTCTGACCTGGATTCAGAAACACGTCAGACCGTCGAAAAAATGATGTTTGATCAGCGGCAAAAGCAGATGGGCCTTCCAACCAGTGAGGAGATGCAGAAGCAGGAGATCTTGAAGAAATTTATGTCTGAGCATCCGGAAATGGACTTCTCAAGGGCCAAGATACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

35.77

Weight (kDa)

6.36

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 154 - 229 2.3e-20 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 596
AasI GACNNNNNNGTC 1 cut(s) 582
AccIII TCCGGA 1 cut(s) 907
AciI CCGC 8 cut(s) 208, 218, 248, 302, 305, 332, 362, 829
AclWI GGATC 2 cut(s) 234, 663
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 1 cut(s) 890
AcuI CTGAAG 2 cut(s) 587, 599
AcyI GRCGYC 4 cut(s) 62, 68, 74, 86
AfaI GTAC 1 cut(s) 467
AfiI CCNNNNNNNGG 1 cut(s) 440
AflIII ACRYGT 2 cut(s) 147, 794
AgsI TTSAA 3 cut(s) 244, 755, 886
AhdI GACNNNNNGTC 1 cut(s) 480
AjiI CACGTC 2 cut(s) 150, 797
AjnI CCWGG 1 cut(s) 780
AluBI AGCT 2 cut(s) 42, 610
AluI AGCT 2 cut(s) 42, 610
Alw21I GWGCWC 2 cut(s) 44, 612
Alw26I GTCTC 1 cut(s) 673
AlwI GGATC 2 cut(s) 234, 663
AlwNI CAGNNNCTG 2 cut(s) 484, 515
Aor13HI TCCGGA 1 cut(s) 907
AoxI GGCC 4 cut(s) 209, 342, 844, 927
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 890
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 3 cut(s) 474, 844, 927
AsuHPI GGTGA 2 cut(s) 262, 737
AvaII GGWCC 1 cut(s) 474
BanII GRGCYC 4 cut(s) 44, 357, 369, 612
Bbv12I GWGCWC 2 cut(s) 44, 612
BbvI GCAGC 1 cut(s) 43
BccI CCATC 3 cut(s) 268, 596, 835
BceAI ACGGC 1 cut(s) 231
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 1 cut(s) 782
BclI TGATCA 1 cut(s) 823
BcoDI GTCTC 1 cut(s) 673
BfmI CTRYAG 1 cut(s) 485
BglI GCCNNNNNGGC 1 cut(s) 59
BglII AGATCT 1 cut(s) 879
BisI GCNGC 4 cut(s) 32, 209, 303, 830
BlpI GCTNAGC 1 cut(s) 43
BlsI GCNGC 4 cut(s) 33, 210, 304, 831
BmcAI AGTACT 1 cut(s) 467
Bme1390I CCNGG 1 cut(s) 782
Bme18I GGWCC 1 cut(s) 474
BmeRI GACNNNNNGTC 1 cut(s) 480
BmgBI CACGTC 2 cut(s) 150, 797
BmgT120I GGNCC 3 cut(s) 474, 844, 927
BmiI GGNNCC 4 cut(s) 354, 366, 476, 762
BmrFI CCNGG 1 cut(s) 782
BmsI GCATC 2 cut(s) 855, 913
BplI GAGNNNNNCTC 2 cut(s) 452, 484
BpmI CTGGAG 2 cut(s) 182, 719
Bpu1102I GCTNAGC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 907
BsaHI GRCGYC 4 cut(s) 62, 68, 74, 86
BsaJI CCNNGG 3 cut(s) 345, 357, 369
BsaWI WCCGGW 2 cut(s) 757, 907
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse1I ACTGG 3 cut(s) 509, 702, 855
BseAI TCCGGA 1 cut(s) 907
BseBI CCWGG 1 cut(s) 782
BseDI CCNNGG 3 cut(s) 345, 357, 369
BseGI GGATG 1 cut(s) 904
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMII CTCAG 3 cut(s) 57, 758, 891
BseNI ACTGG 3 cut(s) 509, 702, 855
BseRI GAGGAG 9 cut(s) 41, 293, 296, 323, 326, 365, 395, 425, 875
BseX3I CGGCCG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 43
Bsh1285I CGRYCG 2 cut(s) 139, 212
BshFI GGCC 4 cut(s) 211, 344, 846, 929
BsiEI CGRYCG 2 cut(s) 139, 212
BsiHKAI GWGCWC 2 cut(s) 44, 612
BsiSI CCGG 2 cut(s) 758, 908
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 1 cut(s) 673
BsnI GGCC 4 cut(s) 211, 344, 846, 929
Bsp1286I GDGCHC 4 cut(s) 44, 357, 369, 612
Bsp13I TCCGGA 1 cut(s) 907
Bsp143I GATC 5 cut(s) 136, 226, 655, 823, 879
Bsp1720I GCTNAGC 1 cut(s) 43
BspACI CCGC 8 cut(s) 208, 218, 248, 302, 305, 332, 362, 829
BspANI GGCC 4 cut(s) 211, 344, 846, 929
BspCNI CTCAG 3 cut(s) 56, 757, 892
BspEI TCCGGA 1 cut(s) 907
BspHI TCATGA 1 cut(s) 201
BspLI GGNNCC 4 cut(s) 354, 366, 476, 762
BspMAI CTGCAG 1 cut(s) 489
BspPI GGATC 2 cut(s) 234, 663
BsrI ACTGG 3 cut(s) 509, 702, 855
BssECI CCNNGG 3 cut(s) 345, 357, 369
BssMI GATC 5 cut(s) 136, 226, 655, 823, 879
BssNI GRCGYC 4 cut(s) 62, 68, 74, 86
BssT1I CCWWGG 3 cut(s) 345, 357, 369
Bst2UI CCWGG 1 cut(s) 782
Bst4CI ACNGT 3 cut(s) 563, 805, 939
Bst6I CTCTTC 2 cut(s) 287, 410
BstACI GRCGYC 4 cut(s) 62, 68, 74, 86
BstC8I GCNNGC 2 cut(s) 51, 516
BstDEI CTNAG 3 cut(s) 43, 744, 900
BstF5I GGATG 1 cut(s) 904
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 5 cut(s) 139, 229, 658, 826, 882
BstMAI GTCTC 1 cut(s) 673
BstMBI GATC 5 cut(s) 136, 226, 655, 823, 879
BstMCI CGRYCG 2 cut(s) 139, 212
BstMWI GCNNNNNNNGC 3 cut(s) 59, 645, 835
BstNI CCWGG 1 cut(s) 782
BstSCI CCNGG 1 cut(s) 780
BstSFI CTRYAG 1 cut(s) 485
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 2 cut(s) 226, 879
BstXI CCANNNNNNTGG 1 cut(s) 376
BstYI RGATCY 2 cut(s) 226, 879
BstZI CGGCCG 1 cut(s) 209
BsuRI GGCC 4 cut(s) 211, 344, 846, 929
BtrI CACGTC 2 cut(s) 150, 797
BtsCI GGATG 1 cut(s) 904
BtsIMutI CAGTG 2 cut(s) 516, 862
Cac8I GCNNGC 2 cut(s) 51, 516
CaiI CAGNNNCTG 2 cut(s) 484, 515
CciI TCATGA 1 cut(s) 201
CfoI GCGC 1 cut(s) 49
Cfr13I GGNCC 3 cut(s) 474, 844, 927
CseI GACGC 4 cut(s) 51, 57, 63, 75
Csp6I GTAC 1 cut(s) 466
CspCI CAANNNNNGTGG 2 cut(s) 683, 718
CviAII CATG 2 cut(s) 202, 471
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 3 cut(s) 43, 744, 900
DpnI GATC 5 cut(s) 138, 228, 657, 825, 881
DpnII GATC 5 cut(s) 136, 226, 655, 823, 879
DrdI GACNNNNNNGTC 1 cut(s) 582
DriI GACNNNNNGTC 1 cut(s) 480
DseDI GACNNNNNNGTC 1 cut(s) 582
EaeI YGGCCR 1 cut(s) 209
EagI CGGCCG 1 cut(s) 209
Eam1104I CTCTTC 2 cut(s) 287, 410
Eam1105I GACNNNNNGTC 1 cut(s) 480
EarI CTCTTC 2 cut(s) 287, 410
EciI GGCGGA 4 cut(s) 233, 320, 347, 377
Ecl136II GAGCTC 2 cut(s) 42, 610
EclXI CGGCCG 1 cut(s) 209
Eco130I CCWWGG 3 cut(s) 345, 357, 369
Eco24I GRGCYC 4 cut(s) 44, 357, 369, 612
Eco32I GATATC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 474
Eco52I CGGCCG 1 cut(s) 209
Eco53kI GAGCTC 2 cut(s) 42, 610
Eco57I CTGAAG 2 cut(s) 587, 599
EcoICRI GAGCTC 2 cut(s) 42, 610
EcoRII CCWGG 1 cut(s) 780
EcoRV GATATC 1 cut(s) 19
EcoT14I CCWWGG 3 cut(s) 345, 357, 369
EcoT38I GRGCYC 4 cut(s) 44, 357, 369, 612
ErhI CCWWGG 3 cut(s) 345, 357, 369
FaeI CATG 2 cut(s) 205, 474
FaiI YATR 9 cut(s) 203, 458, 472, 500, 546, 596, 643, 650, 896
FatI CATG 2 cut(s) 201, 470
FbaI TGATCA 1 cut(s) 823
Fnu4HI GCNGC 4 cut(s) 32, 209, 303, 830
FokI GGATG 1 cut(s) 891
FriOI GRGCYC 4 cut(s) 44, 357, 369, 612
Fsp4HI GCNGC 4 cut(s) 32, 209, 303, 830
GlaI GCGC 1 cut(s) 48
GluI GCNGC 4 cut(s) 32, 209, 303, 830
GsuI CTGGAG 2 cut(s) 182, 719
HaeIII GGCC 4 cut(s) 211, 344, 846, 929
HapII CCGG 2 cut(s) 758, 908
HgaI GACGC 4 cut(s) 51, 57, 63, 75
HhaI GCGC 1 cut(s) 49
Hin1I GRCGYC 4 cut(s) 62, 68, 74, 86
Hin1II CATG 2 cut(s) 205, 474
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 2 cut(s) 481, 785
HpaII CCGG 2 cut(s) 758, 908
HphI GGTGA 2 cut(s) 262, 737
Hpy166II GTNNAC 1 cut(s) 728
Hpy188I TCNGA 8 cut(s) 16, 141, 567, 747, 778, 790, 801, 901
Hpy188III TCNNGA 5 cut(s) 161, 202, 679, 883, 908
Hpy8I GTNNAC 1 cut(s) 728
Hpy99I CGWCG 9 cut(s) 67, 73, 79, 91, 94, 97, 154, 217, 809
HpyAV CCTTC 9 cut(s) 160, 181, 253, 319, 382, 388, 574, 703, 857
HpyCH4III ACNGT 3 cut(s) 563, 805, 939
HpyCH4IV ACGT 2 cut(s) 149, 796
HpyCH4V TGCA 2 cut(s) 487, 868
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 645, 835
HpyF3I CTNAG 3 cut(s) 43, 744, 900
HpySE526I ACGT 2 cut(s) 149, 796
Hsp92I GRCGYC 4 cut(s) 62, 68, 74, 86
Hsp92II CATG 2 cut(s) 205, 474
HspAI GCGC 1 cut(s) 47
Kpn2I TCCGGA 1 cut(s) 907
Ksp22I TGATCA 1 cut(s) 823
Kzo9I GATC 5 cut(s) 136, 226, 655, 823, 879
LmnI GCTCC 7 cut(s) 28, 110, 352, 364, 607, 645, 760
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 2 cut(s) 855, 913
MaeII ACGT 2 cut(s) 149, 796
MalI GATC 5 cut(s) 138, 228, 657, 825, 881
MboI GATC 5 cut(s) 136, 226, 655, 823, 879
MflI RGATCY 2 cut(s) 226, 879
MhlI GDGCHC 4 cut(s) 44, 357, 369, 612
MluCI AATT 3 cut(s) 597, 770, 890
MlyI GAGTC 1 cut(s) 490
MmeI TCCRAC 2 cut(s) 153, 875
MroI TCCGGA 1 cut(s) 907
MseI TTAA 1 cut(s) 495
MslI CAYNNNNRTG 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 829
MspI CCGG 2 cut(s) 758, 908
MspR9I CCNGG 1 cut(s) 782
MvaI CCWGG 1 cut(s) 782
MwoI GCNNNNNNNGC 3 cut(s) 59, 645, 835
NdeII GATC 5 cut(s) 136, 226, 655, 823, 879
NlaIII CATG 2 cut(s) 205, 474
NlaIV GGNNCC 4 cut(s) 354, 366, 476, 762
PagI TCATGA 1 cut(s) 201
PcsI WCGNNNNNNNCGW 6 cut(s) 65, 71, 83, 89, 98, 125
PfeI GAWTC 1 cut(s) 785
PkrI GCNGC 4 cut(s) 33, 210, 304, 831
Ple19I CGATCG 1 cut(s) 139
PleI GAGTC 1 cut(s) 489
PpsI GAGTC 1 cut(s) 489
PsiI TTATAA 1 cut(s) 596
Psp124BI GAGCTC 2 cut(s) 44, 612
Psp6I CCWGG 1 cut(s) 780
PspGI CCWGG 1 cut(s) 780
PspN4I GGNNCC 4 cut(s) 354, 366, 476, 762
PspPI GGNCC 3 cut(s) 474, 844, 927
PstI CTGCAG 1 cut(s) 489
PstNI CAGNNNCTG 2 cut(s) 484, 515
PsuI RGATCY 2 cut(s) 226, 879
PvuI CGATCG 1 cut(s) 139
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 1 cut(s) 509
SacI GAGCTC 2 cut(s) 44, 612
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 4 cut(s) 32, 209, 303, 830
Sau3AI GATC 5 cut(s) 136, 226, 655, 823, 879
Sau96I GGNCC 3 cut(s) 474, 844, 927
ScaI AGTACT 1 cut(s) 467
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 1 cut(s) 782
SduI GDGCHC 4 cut(s) 44, 357, 369, 612
SfaNI GCATC 2 cut(s) 855, 913
SfcI CTRYAG 1 cut(s) 485
SinI GGWCC 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 922
SmoI CTYRAG 1 cut(s) 922
Sse9I AATT 3 cut(s) 597, 770, 890
SsiI CCGC 8 cut(s) 208, 218, 248, 302, 305, 332, 362, 829
SstI GAGCTC 2 cut(s) 44, 612
StyD4I CCNGG 1 cut(s) 780
StyI CCWWGG 3 cut(s) 345, 357, 369
TaaI ACNGT 3 cut(s) 563, 805, 939
TaiI ACGT 2 cut(s) 152, 799
TaqI TCGA 2 cut(s) 135, 807
TasI AATT 3 cut(s) 597, 770, 890
TatI WGTACW 1 cut(s) 465
TauI GCSGC 3 cut(s) 211, 305, 832
TfiI GAWTC 1 cut(s) 785
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 2 cut(s) 516, 862
TseI GCWGC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 190
TspRI CASTG 2 cut(s) 516, 862
VpaK11BI GGWCC 1 cut(s) 474
XapI RAATTY 1 cut(s) 890
ZrmI AGTACT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.