Rmu_sc0008894.1_g000003

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008894.1
OG0000340
Physical Location & Seq
Reverse (-)
11126 .. 12349
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008894.1_g000003.1.cds

Sequence Viewer

Length: 546 bp
atgaacttgaacaaatccaagcttcaggagatgtgccaagccagaggttggaccttccccaagtacagcagcaaccagcaaggcccacctcatcgacctcgcttctcagcctctgtgctcgtccatggcttcaccttcaacactaaaactatgctgacctctaagaaagaagccgagtgctgtgttgctgggttggccttagattacttcgatgaaaacccacaaccaccccagcccaaacgcaccaagtgtttctctttcccggctcagccgtctcatatagctccaccttcatcaccaggtttgccgtatctcacatacaaggagaaagagatatggaatgagacaactagcacagagggaaagaaggacacttatgaactggagctaatgttggcagaagagagaaagctatggcagagagaaaagcatcagcttcaactaaagaacattgaattggagaatcagattgatatgaaaaagaatgagctggagcactgccgcaaggagctgcaacatatggtaatcatactgttgaaatgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

21.1

Weight (kDa)

8.68

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 48
AciI CCGC 1 cut(s) 502
AcuI CTGAAG 1 cut(s) 8
AdeI CACNNNGTG 1 cut(s) 249
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 5 cut(s) 10, 139, 440, 455, 538
AjnI CCWGG 1 cut(s) 298
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AluBI AGCT 7 cut(s) 22, 284, 388, 412, 436, 490, 511
AluI AGCT 7 cut(s) 22, 284, 388, 412, 436, 490, 511
Alw21I GWGCWC 2 cut(s) 120, 498
Alw26I GTCTC 2 cut(s) 279, 338
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 2 cut(s) 82, 195
ApeKI GCWGC 2 cut(s) 69, 511
AspS9I GGNCC 2 cut(s) 51, 83
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 124, 288
AvaII GGWCC 1 cut(s) 51
Bbv12I GWGCWC 2 cut(s) 120, 498
BbvI GCAGC 2 cut(s) 81, 498
BceAI ACGGC 2 cut(s) 256, 292
BciT130I CCWGG 1 cut(s) 300
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 2 cut(s) 279, 338
BfaI CTAG 1 cut(s) 351
BisI GCNGC 3 cut(s) 70, 502, 512
BlpI GCTNAGC 1 cut(s) 267
BlsI GCNGC 3 cut(s) 71, 503, 513
Bme1390I CCNGG 2 cut(s) 263, 300
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 2 cut(s) 51, 83
BmrFI CCNGG 2 cut(s) 263, 300
BmsI GCATC 1 cut(s) 439
BpmI CTGGAG 2 cut(s) 404, 512
Bpu1102I GCTNAGC 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 387
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 120, 281
BseNI ACTGG 1 cut(s) 387
BseXI GCAGC 2 cut(s) 81, 498
BseYI CCCAGC 2 cut(s) 188, 231
BshFI GGCC 2 cut(s) 84, 197
BsiHKAI GWGCWC 2 cut(s) 120, 498
BsiSI CCGG 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 2 cut(s) 279, 338
BsmBI CGTCTC 1 cut(s) 279
BsnI GGCC 2 cut(s) 84, 197
Bsp1286I GDGCHC 2 cut(s) 120, 498
Bsp1720I GCTNAGC 1 cut(s) 267
Bsp19I CCATGG 1 cut(s) 124
BspACI CCGC 1 cut(s) 502
BspANI GGCC 2 cut(s) 84, 197
BspCNI CTCAG 2 cut(s) 119, 280
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 534
Bst6I CTCTTC 1 cut(s) 396
BstDEI CTNAG 4 cut(s) 106, 162, 199, 267
BstDSI CCRYGG 1 cut(s) 124
BstMAI GTCTC 2 cut(s) 279, 338
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 2 cut(s) 261, 298
BstV1I GCAGC 2 cut(s) 81, 498
BsuRI GGCC 2 cut(s) 84, 197
BtgI CCRYGG 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 496
BtsIMutI CAGTG 1 cut(s) 496
CaiI CAGNNNCTG 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 51, 83
CsiI ACCWGGT 1 cut(s) 298
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 125
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 4 cut(s) 106, 162, 199, 267
DraIII CACNNNGTG 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 1 cut(s) 128
FatI CATG 1 cut(s) 124
FauNDI CATATG 1 cut(s) 519
Fnu4HI GCNGC 3 cut(s) 70, 502, 512
Fsp4HI GCNGC 3 cut(s) 70, 502, 512
FspBI CTAG 1 cut(s) 351
GluI GCNGC 3 cut(s) 70, 502, 512
GsaI CCCAGC 2 cut(s) 192, 235
GsuI CTGGAG 2 cut(s) 404, 512
HaeIII GGCC 2 cut(s) 84, 197
HapII CCGG 1 cut(s) 263
Hin1II CATG 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 1 cut(s) 463
HpaII CCGG 1 cut(s) 263
HphI GGTGA 2 cut(s) 124, 288
Hpy188I TCNGA 1 cut(s) 468
Hpy188III TCNNGA 1 cut(s) 26
HpyAV CCTTC 4 cut(s) 64, 145, 300, 361
HpyCH4III ACNGT 1 cut(s) 534
HpyCH4V TGCA 1 cut(s) 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 4 cut(s) 106, 162, 199, 267
Hsp92II CATG 1 cut(s) 128
LmnI GCTCC 4 cut(s) 289, 385, 493, 508
Lsp1109I GCAGC 2 cut(s) 81, 498
LweI GCATC 1 cut(s) 439
MabI ACCWGGT 1 cut(s) 298
MaeI CTAG 1 cut(s) 351
MboII GAAGA 1 cut(s) 413
MhlI GDGCHC 2 cut(s) 120, 498
MluCI AATT 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 29
MnlI CCTC 6 cut(s) 38, 99, 108, 121, 169, 352
MseI TTAA 1 cut(s) 544
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 2 cut(s) 263, 300
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 194
NciI CCSGG 1 cut(s) 263
NcoI CCATGG 1 cut(s) 124
NdeI CATATG 1 cut(s) 519
NlaIII CATG 1 cut(s) 128
NmeAIII GCCGAG 1 cut(s) 199
PfeI GAWTC 1 cut(s) 463
PflMI CCANNNNNTGG 1 cut(s) 48
PkrI GCNGC 3 cut(s) 71, 503, 513
Psp6I CCWGG 1 cut(s) 298
PspFI CCCAGC 2 cut(s) 188, 231
PspGI CCWGG 1 cut(s) 298
PspPI GGNCC 2 cut(s) 51, 83
PstNI CAGNNNCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 544
SatI GCNGC 3 cut(s) 70, 502, 512
Sau96I GGNCC 2 cut(s) 51, 83
ScrFI CCNGG 2 cut(s) 263, 300
SduI GDGCHC 2 cut(s) 120, 498
SexAI ACCWGGT 1 cut(s) 298
SfaNI GCATC 1 cut(s) 439
SinI GGWCC 1 cut(s) 51
Sse9I AATT 1 cut(s) 455
SsiI CCGC 1 cut(s) 502
SspMI CTAG 1 cut(s) 351
StyD4I CCNGG 2 cut(s) 261, 298
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 534
TaqI TCGA 2 cut(s) 94, 210
TasI AATT 1 cut(s) 455
TatI WGTACW 1 cut(s) 63
TauI GCSGC 1 cut(s) 504
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 1 cut(s) 544
Tru9I TTAA 1 cut(s) 544
TscAI CASTG 1 cut(s) 503
TseI GCWGC 2 cut(s) 69, 511
TspDTI ATGAA 5 cut(s) 17, 228, 282, 393, 491
TspRI CASTG 1 cut(s) 503
Van91I CCANNNNNTGG 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 51
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.