Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000340

Physical Location & Seq

Genomic Coordinates Reverse (-)

19854177 .. 19862619

Gene Structure 8443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00015930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCTGTGCAGATTTGAATGCAACGGTCCACAGATCTGGACCGTTGCTTATAATTATGAAATGGATCTGACGGCTGGAGATTGCAGAGGAAAATTGCGACACAATGCACATGTCCACATTGAGAAGGTGTTCTTAGAGCTTGAGCAGAGTGAAGCTCAGAAGAAGGAGCTTAAGAAAAATCTTGAGCAGAGTGAGATGCAACTGCAAATCTTGAAATGGGAAAGGGAGAAGCATAAACTTCAAGAAAGATTGAAGGAAAAGGAAGATGAATTGGCCTCTAGTCAAGCATTTAACCAAGTACTTACTGTGAAGCTGAATGAACATAATGCTGAAATGCACAAGGCTCGTCATTCGTTAATCATGAGCTTGAAAGAATCAACAAGCGATGCTTCTATTGGGTGGAAGACAATGGCAGACCTTGACACCAAACCATTTATTGATGCAACGCAGAGAATGACTTCAATAAACTTTTCTGAAAGAGTATCAGATAAGGCCATGGAGGTAGGTTCTCTCTGGGAGGAAAATCTCAGAGATCCGAGTTGGCATCCATTCAAAATTATCATGGACGAAGAAGGAAAGACAAAGGAAGTTATTGATGAAGAAGATGAGAAACTGAAGAACTTGAAGACGGCCTTTGGTGATCAAGTATATGAGGCTGTGACAACTGCCTTGGCAGAATTGAGTGAGTACAATCCCACTAGTAGGTATCCAATGCTAGAGCCAGGGGCGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

244

Amino Acids

28.34

Weight (kDa)

5.2

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	135 - 240	3.9e-33	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica	Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis	pycom01g15630
rosa_chinensis	RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata	RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora	Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii	Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa	Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha	Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana	Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	51
AciI	CCGC	1 cut(s)	728
AclWI	GGATC	2 cut(s)	72, 527
AcuI	CTGAAG	1 cut(s)	635
AfaI	GTAC	2 cut(s)	300, 689
AfiI	CCNNNNNNNGG	1 cut(s)	702
AflII	CTTAAG	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	8 cut(s)	17, 214, 242, 253, 370, 462, 553, 625
AhlI	ACTAGT	1 cut(s)	698
AjnI	CCWGG	1 cut(s)	721
AluBI	AGCT	5 cut(s)	139, 155, 169, 313, 366
AluI	AGCT	5 cut(s)	139, 155, 169, 313, 366
AlwI	GGATC	2 cut(s)	72, 527
AoxI	GGCC	3 cut(s)	273, 492, 630
Asp700I	GAANNNNTTC	2 cut(s)	128, 457
AspS9I	GGNCC	2 cut(s)	26, 39
AsuHPI	GGTGA	1 cut(s)	650
AvaII	GGWCC	2 cut(s)	26, 39
BbsI	GAAGAC	2 cut(s)	410, 632
BceAI	ACGGC	2 cut(s)	87, 645
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	1 cut(s)	723
BciVI	GTATCC	1 cut(s)	717
BclI	TGATCA	1 cut(s)	640
BcuI	ACTAGT	1 cut(s)	698
BfaI	CTAG	3 cut(s)	279, 699, 716
BfrI	CTTAAG	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	717
BglII	AGATCT	1 cut(s)	33
BmcAI	AGTACT	1 cut(s)	300
Bme1390I	CCNGG	1 cut(s)	723
Bme18I	GGWCC	2 cut(s)	26, 39
BmgT120I	GGNCC	2 cut(s)	26, 39
BmrFI	CCNGG	1 cut(s)	723
BmsI	GCATC	4 cut(s)	186, 376, 430, 553
BpiI	GAAGAC	2 cut(s)	410, 632
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BpmI	CTGGAG	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	161, 203
BsaJI	CCNNGG	3 cut(s)	495, 669, 722
Bsc4I	CCNNNNNNNGG	1 cut(s)	702
BseBI	CCWGG	1 cut(s)	723
BseDI	CCNNGG	3 cut(s)	495, 669, 722
BseGI	GGATG	1 cut(s)	544
BseLI	CCNNNNNNNGG	1 cut(s)	702
BseMII	CTCAG	2 cut(s)	170, 541
BsgI	GTGCAG	1 cut(s)	28
BshFI	GGCC	3 cut(s)	275, 494, 632
BslI	CCNNNNNNNGG	1 cut(s)	702
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	3 cut(s)	275, 494, 632
Bsp143I	GATC	4 cut(s)	33, 64, 532, 640
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	1 cut(s)	728
BspANI	GGCC	3 cut(s)	275, 494, 632
BspCNI	CTCAG	2 cut(s)	169, 540
BspHI	TCATGA	1 cut(s)	360
BspPI	GGATC	2 cut(s)	72, 527
BspTI	CTTAAG	1 cut(s)	170
BssECI	CCNNGG	3 cut(s)	495, 669, 722
BssMI	GATC	4 cut(s)	33, 64, 532, 640
BssT1I	CCWWGG	2 cut(s)	495, 669
Bst2UI	CCWGG	1 cut(s)	723
Bst4CI	ACNGT	3 cut(s)	26, 43, 307
BstAFI	CTTAAG	1 cut(s)	170
BstDEI	CTNAG	3 cut(s)	133, 156, 527
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	544
BstKTI	GATC	4 cut(s)	36, 67, 535, 643
BstMBI	GATC	4 cut(s)	33, 64, 532, 640
BstNI	CCWGG	1 cut(s)	723
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	721
BstV2I	GAAGAC	2 cut(s)	410, 632
BstX2I	RGATCY	3 cut(s)	33, 64, 532
BstXI	CCANNNNNNTGG	1 cut(s)	36
BstYI	RGATCY	3 cut(s)	33, 64, 532
BsuI	GTATCC	1 cut(s)	717
BsuRI	GGCC	3 cut(s)	275, 494, 632
BtgI	CCRYGG	1 cut(s)	495
BtgZI	GCGATG	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	544
CciI	TCATGA	1 cut(s)	360
Cfr13I	GGNCC	2 cut(s)	26, 39
Csp6I	GTAC	2 cut(s)	299, 688
CviAII	CATG	4 cut(s)	110, 361, 496, 562
CviQI	GTAC	2 cut(s)	299, 688
DdeI	CTNAG	3 cut(s)	133, 156, 527
DpnI	GATC	4 cut(s)	35, 66, 534, 642
DpnII	GATC	4 cut(s)	33, 64, 532, 640
Eco130I	CCWWGG	2 cut(s)	495, 669
Eco47I	GGWCC	2 cut(s)	26, 39
Eco57I	CTGAAG	1 cut(s)	635
EcoRII	CCWGG	1 cut(s)	721
EcoT14I	CCWWGG	2 cut(s)	495, 669
ErhI	CCWWGG	2 cut(s)	495, 669
FaeI	CATG	4 cut(s)	113, 364, 499, 565
FalI	AAGNNNNNCTT	6 cut(s)	116, 148, 373, 405, 617, 649
FatI	CATG	4 cut(s)	109, 360, 495, 561
FbaI	TGATCA	1 cut(s)	640
FokI	GGATG	1 cut(s)	531
FspBI	CTAG	3 cut(s)	279, 699, 716
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	3 cut(s)	275, 494, 632
Hin1II	CATG	4 cut(s)	113, 364, 499, 565
HinfI	GANTC	1 cut(s)	374
HphI	GGTGA	1 cut(s)	650
Hpy166II	GTNNAC	2 cut(s)	29, 115
Hpy188I	TCNGA	6 cut(s)	69, 159, 475, 487, 530, 537
Hpy188III	TCNNGA	5 cut(s)	37, 182, 211, 242, 361
Hpy8I	GTNNAC	2 cut(s)	29, 115
HpyAV	CCTTC	4 cut(s)	118, 157, 247, 566
HpyCH4III	ACNGT	3 cut(s)	26, 43, 307
HpyCH4V	TGCA	8 cut(s)	9, 21, 84, 107, 199, 205, 337, 443
HpyF3I	CTNAG	3 cut(s)	133, 156, 527
Hsp92II	CATG	4 cut(s)	113, 364, 499, 565
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	4 cut(s)	33, 64, 532, 640
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	4 cut(s)	22, 60, 499, 708
LweI	GCATC	4 cut(s)	186, 376, 430, 553
MaeI	CTAG	3 cut(s)	279, 699, 716
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	4 cut(s)	35, 66, 534, 642
MboI	GATC	4 cut(s)	33, 64, 532, 640
MboII	GAAGA	8 cut(s)	172, 275, 415, 581, 611, 614, 628, 637
MflI	RGATCY	3 cut(s)	33, 64, 532
MluCI	AATT	5 cut(s)	52, 92, 269, 555, 677
MnlI	CCTC	5 cut(s)	80, 286, 493, 511, 646
MroXI	GAANNNNTTC	2 cut(s)	128, 457
MseI	TTAA	3 cut(s)	171, 291, 356
MspCI	CTTAAG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	723
Mva1269I	GAATGC	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	723
NcoI	CCATGG	1 cut(s)	495
NdeII	GATC	4 cut(s)	33, 64, 532, 640
NlaIII	CATG	4 cut(s)	113, 364, 499, 565
NmuCI	GTSAC	1 cut(s)	658
NspI	RCATGY	1 cut(s)	113
PagI	TCATGA	1 cut(s)	360
PciI	ACATGT	1 cut(s)	109
PctI	GAATGC	1 cut(s)	23
PdmI	GAANNNNTTC	2 cut(s)	128, 457
PfeI	GAWTC	1 cut(s)	374
PscI	ACATGT	1 cut(s)	109
PsiI	TTATAA	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	721
PspGI	CCWGG	1 cut(s)	721
PspPI	GGNCC	2 cut(s)	26, 39
PsuI	RGATCY	3 cut(s)	33, 64, 532
RsaI	GTAC	2 cut(s)	300, 689
RsaNI	GTAC	2 cut(s)	299, 688
SaqAI	TTAA	3 cut(s)	171, 291, 356
Sau3AI	GATC	4 cut(s)	33, 64, 532, 640
Sau96I	GGNCC	2 cut(s)	26, 39
ScaI	AGTACT	1 cut(s)	300
ScrFI	CCNGG	1 cut(s)	723
SfaNI	GCATC	4 cut(s)	186, 376, 430, 553
SinI	GGWCC	2 cut(s)	26, 39
SmlI	CTYRAG	3 cut(s)	140, 170, 182
SmoI	CTYRAG	3 cut(s)	140, 170, 182
SpeI	ACTAGT	1 cut(s)	698
Sse9I	AATT	5 cut(s)	52, 92, 269, 555, 677
SsiI	CCGC	1 cut(s)	728
SspMI	CTAG	3 cut(s)	279, 699, 716
StyD4I	CCNGG	1 cut(s)	721
StyI	CCWWGG	2 cut(s)	495, 669
TaaI	ACNGT	3 cut(s)	26, 43, 307
TasI	AATT	5 cut(s)	52, 92, 269, 555, 677
TatI	WGTACW	2 cut(s)	298, 687
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	3 cut(s)	171, 291, 356
Tru9I	TTAA	3 cut(s)	171, 291, 356
TseFI	GTSAC	1 cut(s)	658
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	4 cut(s)	72, 282, 333, 612
Vha464I	CTTAAG	1 cut(s)	170
VpaK11BI	GGWCC	2 cut(s)	26, 39
XceI	RCATGY	1 cut(s)	113
XmnI	GAANNNNTTC	2 cut(s)	128, 457
XspI	CTAG	3 cut(s)	279, 699, 716
ZrmI	AGTACT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.