Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003352.1

Orthogroup ID

OG0000340

Physical Location & Seq

Genomic Coordinates Forward (+)

207468 .. 208710

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003352.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgaactgtcacgcaaattcgaatgcagcaactgattatcgaagtcacattgatgtcgaaactaagaagtccctcccatccaagggatatcatatcgaggccggaaaagaatgtcaaaaccagtgttctaaaaatcggccgcccagaccgcctaggcggcgcctagcgctgggcggcagcaggccgactcgagagattatagatgaagaagatgaaaaactggcaggtttgaagaatgagcttggtgatgaagtggcccaggcagttgtcactgccatgatggaactgaatgagtataatcccagtggcaggtattcagtaagagagctatggaactacaaagaacagaggaaggccactctgaaagagggagcaagttatattctgaagcagtggaaactgcagaagggtcggagaagaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

141

Amino Acids

16.2

Weight (kDa)

9.51

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica	Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis	pycom01g15630
rosa_chinensis	RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata	RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora	Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii	Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa	Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha	Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana	Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	215, 300
AccB1I	GGYRCC	1 cut(s)	159
AciI	CCGC	4 cut(s)	140, 149, 157, 174
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	407
AcyI	GRCGYC	1 cut(s)	160
AfeI	AGCGCT	1 cut(s)	168
AfiI	CCNNNNNNNGG	4 cut(s)	82, 83, 169, 309
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	2 cut(s)	241, 328
AluI	AGCT	2 cut(s)	241, 328
AlwNI	CAGNNNCTG	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	189
Aor51HI	AGCGCT	1 cut(s)	168
AoxI	GGCC	5 cut(s)	99, 137, 182, 255, 354
ApeKI	GCWGC	2 cut(s)	26, 177
ApoI	RAATTY	1 cut(s)	16
AspA2I	CCTAGG	1 cut(s)	152
AspLEI	GCGC	2 cut(s)	162, 169
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	257
AsuII	TTCGAA	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	189
AvrII	CCTAGG	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	38, 189
BccI	CCATC	2 cut(s)	85, 274
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	1 cut(s)	260
BfaI	CTAG	2 cut(s)	153, 164
BfmI	CTRYAG	1 cut(s)	401
BfoI	RGCGCY	2 cut(s)	163, 170
BfuAI	ACCTGC	2 cut(s)	215, 300
BglI	GCCNNNNNGGC	1 cut(s)	157
BisI	GCNGC	5 cut(s)	27, 140, 158, 175, 178
BlnI	CCTAGG	1 cut(s)	152
BlsI	GCNGC	5 cut(s)	28, 141, 159, 176, 179
Bme1390I	CCNGG	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	260
BmrI	ACTGGG	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	297
Bpu14I	TTCGAA	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	3 cut(s)	81, 152, 258
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 83, 169, 309
Bse1I	ACTGG	3 cut(s)	121, 225, 303
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	3 cut(s)	81, 152, 258
BseGI	GGATG	1 cut(s)	77
BseLI	CCNNNNNNNGG	4 cut(s)	82, 83, 169, 309
BseNI	ACTGG	3 cut(s)	121, 225, 303
BseX3I	CGGCCG	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	38, 189
BseYI	CCCAGC	1 cut(s)	169
Bsh1285I	CGRYCG	1 cut(s)	140
BshFI	GGCC	5 cut(s)	101, 139, 184, 257, 356
BshNI	GGYRCC	1 cut(s)	159
BsiEI	CGRYCG	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	4 cut(s)	82, 83, 169, 309
BsmFI	GGGAC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	5 cut(s)	101, 139, 184, 257, 356
BsoBI	CYCGRG	1 cut(s)	189
Bsp119I	TTCGAA	1 cut(s)	20
BspACI	CCGC	4 cut(s)	140, 149, 157, 174
BspANI	GGCC	5 cut(s)	101, 139, 184, 257, 356
BspLI	GGNNCC	1 cut(s)	161
BspMAI	CTGCAG	1 cut(s)	405
BspMI	ACCTGC	2 cut(s)	215, 300
BspT104I	TTCGAA	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	159
BsrI	ACTGG	3 cut(s)	121, 225, 303
BssECI	CCNNGG	3 cut(s)	81, 152, 258
BssNI	GRCGYC	1 cut(s)	160
BssT1I	CCWWGG	2 cut(s)	81, 152
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	8
BstACI	GRCGYC	1 cut(s)	160
BstBI	TTCGAA	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	77
BstH2I	RGCGCY	2 cut(s)	163, 170
BstHHI	GCGC	2 cut(s)	162, 169
BstMCI	CGRYCG	1 cut(s)	140
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 157, 166
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	401
BstV1I	GCAGC	2 cut(s)	38, 189
BstZI	CGGCCG	1 cut(s)	137
BsuRI	GGCC	5 cut(s)	101, 139, 184, 257, 356
BtsCI	GGATG	1 cut(s)	77
BtsI	GCAGTG	2 cut(s)	270, 398
BtsIMutI	CAGTG	4 cut(s)	128, 270, 310, 398
BveI	ACCTGC	2 cut(s)	215, 300
Cac8I	GCNNGC	1 cut(s)	182
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	2 cut(s)	162, 169
Cfr13I	GGNCC	1 cut(s)	256
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	7 cut(s)	101, 139, 184, 241, 257, 328, 356
CviKI_1	RGCY	7 cut(s)	101, 139, 184, 241, 257, 328, 356
DdeI	CTNAG	1 cut(s)	63
DinI	GGCGCC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	137
EagI	CGGCCG	1 cut(s)	137
EclXI	CGGCCG	1 cut(s)	137
Eco130I	CCWWGG	2 cut(s)	81, 152
Eco32I	GATATC	1 cut(s)	89
Eco47III	AGCGCT	1 cut(s)	168
Eco52I	CGGCCG	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	407
Eco88I	CYCGRG	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	89
EcoT14I	CCWWGG	2 cut(s)	81, 152
EgeI	GGCGCC	1 cut(s)	161
EheI	GGCGCC	1 cut(s)	161
ErhI	CCWWGG	2 cut(s)	81, 152
FaeI	CATG	1 cut(s)	280
FaiI	YATR	6 cut(s)	93, 200, 278, 297, 331, 381
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	1 cut(s)	276
Fnu4HI	GCNGC	5 cut(s)	27, 140, 158, 175, 178
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	5 cut(s)	27, 140, 158, 175, 178
FspBI	CTAG	2 cut(s)	153, 164
GlaI	GCGC	2 cut(s)	161, 168
GluI	GCNGC	5 cut(s)	27, 140, 158, 175, 178
GsaI	CCCAGC	1 cut(s)	173
HaeII	RGCGCY	2 cut(s)	163, 170
HaeIII	GGCC	5 cut(s)	101, 139, 184, 257, 356
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	2 cut(s)	162, 169
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	2 cut(s)	160, 167
HinP1I	GCGC	2 cut(s)	160, 167
HinfI	GANTC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	257
Hpy188I	TCNGA	3 cut(s)	363, 387, 414
Hpy188III	TCNNGA	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	346, 400
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	2 cut(s)	26, 403
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 157, 166
HpyF3I	CTNAG	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	2 cut(s)	160, 167
KasI	GGCGCC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	2 cut(s)	38, 189
MaeI	CTAG	2 cut(s)	153, 164
MaeIII	GTNAC	3 cut(s)	8, 44, 268
MboII	GAAGA	3 cut(s)	218, 221, 244
MluCI	AATT	1 cut(s)	16
Mly113I	GGCGCC	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	4 cut(s)	83, 91, 342, 361
MslI	CAYNNNNRTG	2 cut(s)	51, 275
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	260
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	3 cut(s)	148, 157, 166
NarI	GGCGCC	1 cut(s)	160
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	1 cut(s)	161
NmuCI	GTSAC	3 cut(s)	8, 44, 268
NspV	TTCGAA	1 cut(s)	20
PaeR7I	CTCGAG	1 cut(s)	189
PctI	GAATGC	1 cut(s)	28
PkrI	GCNGC	5 cut(s)	28, 141, 159, 176, 179
PleI	GAGTC	1 cut(s)	181
PluTI	GGCGCC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	405
PstNI	CAGNNNCTG	1 cut(s)	32
RseI	CAYNNNNRTG	2 cut(s)	51, 275
SatI	GCNGC	5 cut(s)	27, 140, 158, 175, 178
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	260
SetI	ASST	4 cut(s)	229, 243, 314, 330
SfcI	CTRYAG	1 cut(s)	401
SfoI	GGCGCC	1 cut(s)	161
Sfr274I	CTCGAG	1 cut(s)	189
SfuI	TTCGAA	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	189
SmiMI	CAYNNNNRTG	2 cut(s)	51, 275
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	1 cut(s)	16
SsiI	CCGC	4 cut(s)	140, 149, 157, 174
SspDI	GGCGCC	1 cut(s)	159
SspMI	CTAG	2 cut(s)	153, 164
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	2 cut(s)	81, 152
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	5 cut(s)	20, 40, 57, 96, 190
TasI	AATT	1 cut(s)	16
TauI	GCSGC	3 cut(s)	142, 160, 177
TscAI	CASTG	4 cut(s)	128, 277, 310, 398
TseFI	GTSAC	3 cut(s)	8, 44, 268
TseI	GCWGC	2 cut(s)	26, 177
Tsp45I	GTSAC	3 cut(s)	8, 44, 268
TspDTI	ATGAA	4 cut(s)	17, 219, 228, 264
TspRI	CASTG	4 cut(s)	128, 277, 310, 398
XapI	RAATTY	1 cut(s)	16
XhoI	CTCGAG	1 cut(s)	189
XmaJI	CCTAGG	1 cut(s)	152
XspI	CTAG	2 cut(s)	153, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.