Rmu_sc0001648.1_g000049

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001648.1
OG0000340
Physical Location & Seq
Reverse (-)
283020 .. 289468
6449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001648.1_g000049.1.cds

Sequence Viewer

Length: 1056 bp
atgaacttgaacaaatccaagcttcaggagatgttccaagccagaggttggaccttccccaagtacagctgcaaccagcaaggcccacctcaccgacctcgcttctcagcctctgtgctcgtccatggcttcaccttcaacactaaaactatgctgaactctaagaaagaagccgagtgctgtgctgctggcttggtcttggattacttcgatgaaaacccacaaccaccccagcccaaacgcaccaagtgcttctctttcccggctcagccttcccatatagcttcacttcctccgccttcatcaccaggtaacaaagttttagaggccctgggtttgccgtatctcacatacaaggagaaagagatatggaatgagacaactagcacagagggaaagaaggacacttcagaagagagaaagctatggcagagagaaaagcatcagcttcaactaaagaacattgaattggagaatcagattgatatgaaaaagaatgagctggagcactgccgcaaggagctacagcataggagagaaaatgagaagcttcactcagaaataattgaattgaaagaccagctccaagccaaacaggcagtgaatgaggattttgaggcccagaagaatgttaaagcacttgaacaaatgtttaaggagaaggagcaggagcttctgatctccaagagaagatatactgcattagaagaagcaaatgagagggcagtggagttgtgctctatgtgggaggattatgttggggattctaaacggaacccatacaaggttattatggatgagacaggaaaaagaatggaaattattgatgaagaagataaaaagttgaaaaatttgaagactgagctcggggatgaagtatccaaggtggtgactacttcgttaatggaagtgaatgaacataattccagtgggaggtataagatacaagagctttggaattttaaagcagggaggaaggcaacacttaaagaggaagttgcttacattctaaagcaatggaacgtgcttaagaacacgaagcggcgaagaaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

351

Amino Acids

41.15

Weight (kDa)

8.77

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 48
AciI CCGC 3 cut(s) 296, 514, 1042
AcsI RAATTY 2 cut(s) 850, 958
AcuI CTGAAG 2 cut(s) 8, 393
AdeI CACNNNGTG 1 cut(s) 249
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 3 cut(s) 48, 784, 933
AflII CTTAAG 1 cut(s) 1028
AgsI TTSAA 9 cut(s) 10, 139, 452, 467, 569, 574, 644, 847, 856
AjnI CCWGG 2 cut(s) 307, 330
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
Alw21I GWGCWC 4 cut(s) 120, 510, 740, 867
Alw26I GTCTC 2 cut(s) 371, 794
AlwNI CAGNNNCTG 1 cut(s) 113
Ama87I CYCGRG 1 cut(s) 866
AoxI GGCC 3 cut(s) 82, 327, 618
ApeKI GCWGC 2 cut(s) 69, 185
ApoI RAATTY 2 cut(s) 850, 958
AspS9I GGNCC 4 cut(s) 51, 83, 328, 619
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 4 cut(s) 83, 124, 297, 901
AvaI CYCGRG 1 cut(s) 866
AvaII GGWCC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 867
BbsI GAAGAC 1 cut(s) 863
Bbv12I GWGCWC 4 cut(s) 120, 510, 740, 867
BbvI GCAGC 2 cut(s) 56, 172
BceAI ACGGC 1 cut(s) 325
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BciT130I CCWGG 2 cut(s) 309, 332
BciVI GTATCC 1 cut(s) 889
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 2 cut(s) 371, 794
BfaI CTAG 2 cut(s) 384, 1054
BfmI CTRYAG 1 cut(s) 524
BfrI CTTAAG 1 cut(s) 1028
BfuI GTATCC 1 cut(s) 889
BglI GCCNNNNNGGC 1 cut(s) 596
BisI GCNGC 4 cut(s) 70, 186, 514, 1043
BlpI GCTNAGC 1 cut(s) 267
BlsI GCNGC 4 cut(s) 71, 187, 515, 1044
Bme1390I CCNGG 3 cut(s) 263, 309, 332
Bme18I GGWCC 1 cut(s) 51
BmeT110I CYCGRG 1 cut(s) 866
BmgT120I GGNCC 4 cut(s) 51, 83, 328, 619
BmiI GGNNCC 1 cut(s) 776
BmrFI CCNGG 3 cut(s) 263, 309, 332
BmsI GCATC 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 863
BplI GAGNNNNNCTC 2 cut(s) 722, 754
BpmI CTGGAG 1 cut(s) 524
Bpu1102I GCTNAGC 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 263
BsaJI CCNNGG 4 cut(s) 124, 330, 331, 882
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 784, 933
Bse1I ACTGG 1 cut(s) 927
Bse3DI GCAATG 1 cut(s) 1022
BseBI CCWGG 2 cut(s) 309, 332
BseDI CCNNGG 4 cut(s) 124, 330, 331, 882
BseGI GGATG 2 cut(s) 802, 877
BseLI CCNNNNNNNGG 3 cut(s) 48, 784, 933
BseMI GCAATG 1 cut(s) 1022
BseMII CTCAG 4 cut(s) 120, 281, 570, 852
BseNI ACTGG 1 cut(s) 927
BseXI GCAGC 2 cut(s) 56, 172
BseYI CCCAGC 1 cut(s) 231
BshFI GGCC 3 cut(s) 84, 329, 620
BsiHKAI GWGCWC 4 cut(s) 120, 510, 740, 867
BsiHKCI CYCGRG 1 cut(s) 866
BsiSI CCGG 1 cut(s) 263
BslI CCNNNNNNNGG 3 cut(s) 48, 784, 933
BsmAI GTCTC 2 cut(s) 371, 794
BsnI GGCC 3 cut(s) 84, 329, 620
BsoBI CYCGRG 1 cut(s) 866
Bsp1286I GDGCHC 4 cut(s) 120, 510, 740, 867
Bsp143I GATC 1 cut(s) 678
Bsp1720I GCTNAGC 1 cut(s) 267
Bsp19I CCATGG 1 cut(s) 124
BspACI CCGC 3 cut(s) 296, 514, 1042
BspANI GGCC 3 cut(s) 84, 329, 620
BspCNI CTCAG 4 cut(s) 119, 280, 569, 853
BspLI GGNNCC 1 cut(s) 776
BspTI CTTAAG 1 cut(s) 1028
BsrDI GCAATG 1 cut(s) 1022
BsrI ACTGG 1 cut(s) 927
BssECI CCNNGG 4 cut(s) 124, 330, 331, 882
BssMI GATC 1 cut(s) 678
BssT1I CCWWGG 2 cut(s) 124, 882
Bst2UI CCWGG 2 cut(s) 309, 332
Bst6I CTCTTC 1 cut(s) 408
BstAFI CTTAAG 1 cut(s) 1028
BstAPI GCANNNNNTGC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 5 cut(s) 106, 162, 267, 556, 861
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 2 cut(s) 802, 877
BstKTI GATC 1 cut(s) 681
BstMAI GTCTC 2 cut(s) 371, 794
BstMBI GATC 1 cut(s) 678
BstMWI GCNNNNNNNGC 2 cut(s) 249, 596
BstNI CCWGG 2 cut(s) 309, 332
BstSCI CCNGG 3 cut(s) 261, 307, 330
BstSFI CTRYAG 1 cut(s) 524
BstV1I GCAGC 2 cut(s) 56, 172
BstV2I GAAGAC 1 cut(s) 863
BsuI GTATCC 1 cut(s) 889
BsuRI GGCC 3 cut(s) 84, 329, 620
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 2 cut(s) 802, 877
BtsI GCAGTG 3 cut(s) 508, 606, 732
BtsIMutI CAGTG 4 cut(s) 508, 606, 732, 934
Cac8I GCNNGC 1 cut(s) 190
CaiI CAGNNNCTG 1 cut(s) 113
Cfr13I GGNCC 4 cut(s) 51, 83, 328, 619
CsiI ACCWGGT 1 cut(s) 307
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 125
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 5 cut(s) 106, 162, 267, 556, 861
DpnI GATC 1 cut(s) 680
DpnII GATC 1 cut(s) 678
DraI TTTAAA 1 cut(s) 964
DraIII CACNNNGTG 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
EciI GGCGGA 1 cut(s) 285
Ecl136II GAGCTC 1 cut(s) 865
Eco130I CCWWGG 2 cut(s) 124, 882
Eco24I GRGCYC 1 cut(s) 867
Eco47I GGWCC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 865
Eco57I CTGAAG 2 cut(s) 8, 393
Eco88I CYCGRG 1 cut(s) 866
EcoICRI GAGCTC 1 cut(s) 865
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 307, 330
EcoT14I CCWWGG 2 cut(s) 124, 882
EcoT38I GRGCYC 1 cut(s) 867
ErhI CCWWGG 2 cut(s) 124, 882
FaeI CATG 1 cut(s) 128
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 4 cut(s) 70, 186, 514, 1043
FokI GGATG 2 cut(s) 809, 884
FriOI GRGCYC 1 cut(s) 867
Fsp4HI GCNGC 4 cut(s) 70, 186, 514, 1043
FspBI CTAG 2 cut(s) 384, 1054
GluI GCNGC 4 cut(s) 70, 186, 514, 1043
GsaI CCCAGC 1 cut(s) 235
GsuI CTGGAG 1 cut(s) 524
HaeIII GGCC 3 cut(s) 84, 329, 620
HapII CCGG 1 cut(s) 263
Hin1II CATG 1 cut(s) 128
HindIII AAGCTT 2 cut(s) 20, 548
HinfI GANTC 2 cut(s) 475, 764
HpaII CCGG 1 cut(s) 263
HphI GGTGA 4 cut(s) 83, 124, 297, 901
Hpy188I TCNGA 4 cut(s) 412, 480, 559, 678
Hpy188III TCNNGA 1 cut(s) 26
HpyAV CCTTC 7 cut(s) 64, 145, 282, 309, 394, 655, 970
HpyCH4IV ACGT 1 cut(s) 1023
HpyCH4V TGCA 2 cut(s) 72, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 596
HpyF3I CTNAG 5 cut(s) 106, 162, 267, 556, 861
HpySE526I ACGT 1 cut(s) 1023
Hsp92II CATG 1 cut(s) 128
Kzo9I GATC 1 cut(s) 678
LmnI GCTCC 5 cut(s) 505, 520, 588, 664, 670
Lsp1109I GCAGC 2 cut(s) 56, 172
LweI GCATC 1 cut(s) 451
MabI ACCWGGT 1 cut(s) 307
MaeI CTAG 2 cut(s) 384, 1054
MaeII ACGT 1 cut(s) 1023
MaeIII GTNAC 2 cut(s) 311, 889
MalI GATC 1 cut(s) 680
MboI GATC 1 cut(s) 678
MboII GAAGA 7 cut(s) 425, 637, 702, 719, 842, 845, 868
MhlI GDGCHC 4 cut(s) 120, 510, 740, 867
MluCI AATT 7 cut(s) 467, 564, 569, 819, 850, 922, 958
MmeI TCCRAC 1 cut(s) 29
MseI TTAA 6 cut(s) 633, 654, 902, 963, 987, 1029
MspA1I CMGCKG 1 cut(s) 69
MspCI CTTAAG 1 cut(s) 1028
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 3 cut(s) 263, 309, 332
MvaI CCWGG 2 cut(s) 309, 332
MwoI GCNNNNNNNGC 2 cut(s) 249, 596
NciI CCSGG 1 cut(s) 263
NcoI CCATGG 1 cut(s) 124
NdeII GATC 1 cut(s) 678
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 776
NmeAIII GCCGAG 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 889
PasI CCCWGGG 1 cut(s) 331
PfeI GAWTC 2 cut(s) 475, 764
PflMI CCANNNNNTGG 1 cut(s) 48
PkrI GCNGC 4 cut(s) 71, 187, 515, 1044
Psp124BI GAGCTC 1 cut(s) 867
Psp6I CCWGG 2 cut(s) 307, 330
PspFI CCCAGC 1 cut(s) 231
PspGI CCWGG 2 cut(s) 307, 330
PspN4I GGNNCC 1 cut(s) 776
PspPI GGNCC 4 cut(s) 51, 83, 328, 619
PstNI CAGNNNCTG 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 69
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SacI GAGCTC 1 cut(s) 867
SaqAI TTAA 6 cut(s) 633, 654, 902, 963, 987, 1029
SatI GCNGC 4 cut(s) 70, 186, 514, 1043
Sau3AI GATC 1 cut(s) 678
Sau96I GGNCC 4 cut(s) 51, 83, 328, 619
ScrFI CCNGG 3 cut(s) 263, 309, 332
SduI GDGCHC 4 cut(s) 120, 510, 740, 867
SexAI ACCWGGT 1 cut(s) 307
SfaNI GCATC 1 cut(s) 451
SfcI CTRYAG 1 cut(s) 524
SinI GGWCC 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 1028
SmoI CTYRAG 1 cut(s) 1028
Sse9I AATT 7 cut(s) 467, 564, 569, 819, 850, 922, 958
SsiI CCGC 3 cut(s) 296, 514, 1042
SspMI CTAG 2 cut(s) 384, 1054
SstI GAGCTC 1 cut(s) 867
StyD4I CCNGG 3 cut(s) 261, 307, 330
StyI CCWWGG 2 cut(s) 124, 882
TaiI ACGT 1 cut(s) 1026
TaqI TCGA 1 cut(s) 210
TasI AATT 7 cut(s) 467, 564, 569, 819, 850, 922, 958
TatI WGTACW 1 cut(s) 63
TauI GCSGC 2 cut(s) 516, 1045
TfiI GAWTC 2 cut(s) 475, 764
Tru1I TTAA 6 cut(s) 633, 654, 902, 963, 987, 1029
Tru9I TTAA 6 cut(s) 633, 654, 902, 963, 987, 1029
TscAI CASTG 4 cut(s) 515, 606, 732, 934
TseFI GTSAC 1 cut(s) 889
TseI GCWGC 2 cut(s) 69, 185
Tsp45I GTSAC 1 cut(s) 889
TspDTI ATGAA 7 cut(s) 17, 228, 291, 503, 843, 888, 930
TspGWI ACGGA 1 cut(s) 787
TspRI CASTG 4 cut(s) 515, 606, 732, 934
Van91I CCANNNNNTGG 1 cut(s) 48
Vha464I CTTAAG 1 cut(s) 1028
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 2 cut(s) 850, 958
XspI CTAG 2 cut(s) 384, 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.