Rh6DG082100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
9568837 .. 9570689
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG082100.1

Sequence Viewer

Length: 315 bp
ATGAGGAAATCTATTCGAGTGAAGGTGACTCTGACTAACCTATTTCAACAAAGCATCAGCATAAATTCTCAGACTATGCCTTCTGGAGAGATCTCAAAGAAAGGTGCAAAGAGAGCCAAAATGCAAGATAAAGTTGCACATGCAGTTGATGTTTCAGCTAGGCAACAAAGGCATAATCCCATGAGAAATTCTGAAGCAAATTTGAGTTCTCCGTCTCATTTGCCAGCTGATGCAGAACCTATTTCAGCTGAAGGTGAAGCTACAGAAAAGCCAAAAATACCACCTAGAGAAACAAGTGAAAATGTACAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.42

Weight (kDa)

9.89

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 64, 187, 199
AcuI CTGAAG 2 cut(s) 213, 270
AfaI GTAC 1 cut(s) 306
AgsI TTSAA 1 cut(s) 47
AluBI AGCT 5 cut(s) 158, 227, 248, 260, 312
AluI AGCT 5 cut(s) 158, 227, 248, 260, 312
Alw26I GTCTC 1 cut(s) 219
ApoI RAATTY 3 cut(s) 64, 187, 199
AsuHPI GGTGA 2 cut(s) 37, 266
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 2 cut(s) 159, 285
BfmI CTRYAG 1 cut(s) 261
BglII AGATCT 1 cut(s) 90
BmsI GCATC 2 cut(s) 63, 220
BpmI CTGGAG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
Bsp1407I TGTACA 1 cut(s) 304
Bsp143I GATC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 82
BsrGI TGTACA 1 cut(s) 304
BssMI GATC 1 cut(s) 90
BstAUI TGTACA 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 69
BstKTI GATC 1 cut(s) 93
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 2 cut(s) 113, 169
BstNSI RCATGY 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 305
CviAII CATG 2 cut(s) 140, 181
CviJI RGCY 7 cut(s) 116, 158, 227, 248, 260, 271, 312
CviKI_1 RGCY 7 cut(s) 116, 158, 227, 248, 260, 271, 312
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 1 cut(s) 69
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eco57I CTGAAG 2 cut(s) 213, 270
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 2 cut(s) 143, 184
FaiI YATR 5 cut(s) 62, 77, 141, 174, 182
FatI CATG 2 cut(s) 139, 180
FspBI CTAG 2 cut(s) 159, 285
GsuI CTGGAG 1 cut(s) 105
Hin1II CATG 2 cut(s) 143, 184
HinfI GANTC 1 cut(s) 28
HphI GGTGA 2 cut(s) 37, 266
Hpy188I TCNGA 3 cut(s) 33, 72, 193
Hpy188III TCNNGA 1 cut(s) 84
HpyAV CCTTC 3 cut(s) 16, 90, 245
HpyCH4V TGCA 5 cut(s) 107, 124, 137, 143, 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 169
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 2 cut(s) 143, 184
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 2 cut(s) 69, 237
LweI GCATC 2 cut(s) 63, 220
MaeI CTAG 2 cut(s) 159, 285
MaeIII GTNAC 1 cut(s) 25
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MflI RGATCY 1 cut(s) 90
MluCI AATT 3 cut(s) 64, 187, 199
MlyI GAGTC 1 cut(s) 22
MspA1I CMGCKG 2 cut(s) 227, 248
MwoI GCNNNNNNNGC 2 cut(s) 113, 169
NdeII GATC 1 cut(s) 90
NlaIII CATG 2 cut(s) 143, 184
NmuCI GTSAC 1 cut(s) 25
NspI RCATGY 1 cut(s) 143
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PsuI RGATCY 1 cut(s) 90
PvuII CAGCTG 2 cut(s) 227, 248
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
Sau3AI GATC 1 cut(s) 90
SchI GAGTC 1 cut(s) 22
SfaNI GCATC 2 cut(s) 63, 220
SfcI CTRYAG 1 cut(s) 261
SgeI CNNG 9 cut(s) 29, 96, 137, 152, 171, 193, 236, 297, 306
Sse9I AATT 3 cut(s) 64, 187, 199
SspMI CTAG 2 cut(s) 159, 285
TaqI TCGA 1 cut(s) 16
TasI AATT 3 cut(s) 64, 187, 199
TatI WGTACW 1 cut(s) 304
TseFI GTSAC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 25
TspGWI ACGGA 1 cut(s) 201
XapI RAATTY 3 cut(s) 64, 187, 199
XceI RCATGY 1 cut(s) 143
XspI CTAG 2 cut(s) 159, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.