Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000340

Physical Location & Seq

Genomic Coordinates Forward (+)

70992612 .. 70995042

Gene Structure 2431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G040230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGACAACTATAGTGAGCGAGGCTCAGAAGAAAGAGCTGAAGATAAAGCTAGTGCAAAGAGAAAACGAGAAGAGAGAGATTGAGAATGATATTGAGCAGATTGAGATGCAACTGCAAAAAGTGAATGAAAAGGCTAGCTTAGAGACGAAGAAGGCTGATGAACTGGTGTTATGGTTGGGTGAAGAACGAAAGAAATGGGAGAAAGAAAAGAATATACTTCACAGGAAAGTAACTGAGTTGGAGAAACAGCTAGAGGTGAAAAAGAGCTACATTGATGAGTTGGAAGCTAAGACCAATGAAATAAAAGAAAAATTAATGAAGGAAAAGGAAGATGGATTGGAGGATATTGAAGCACTTAACCAAGTACTTATTGTCGAGGGGAATAACAAGAATGCTGAACTACAGGAGGCTCGTCATGCAATGATTATGGGATTGAAGGAATCAGCAAGCAACACTATTGGTGTGAAGATAATGGGAGATCTTGAGAAACAGCCATTTGTTGCTGCAACCAAGAGAATCAACAATTCTAGAAAATATAGAAAGAGAGCTGCTGATAATACGGCTGCAGAGCTATGCTCTCTTTGGGAGCAATATCTTAGAGATCCGAATTGGCATCCATTCAAAATGATCACTGATAAAGATGGAAAGACACTGGAAGTTATTGATGAAGATGATGAAAAATTGGAGAAATTGAAGACAGAATTTGGCGATGAAGTTTTTGAAGCTGTGAAAACTGCCCTGGTTGAATTGAACGAGTATAATCCAAGCGGCAGATATCCAGTACTAGAGCTTTGGAATTTCAGGGAAAACAGGAAGGCGACGTTAGCAGAGGGTGTATCTCATCTACTGAACCATATGAAACCTAATAAGCGGAGAAGTGTCCGTCCAACCACTGCCTGGAAGCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

303

Amino Acids

35.4

Weight (kDa)

6.13

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	156 - 292	2.4e-51	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica	Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis	pycom01g15630
rosa_chinensis	RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata	RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora	Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii	Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa	Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha	Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana	Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	897
AciI	CCGC	2 cut(s)	768, 871
AclWI	GGATC	1 cut(s)	596
AcsI	RAATTY	2 cut(s)	701, 796
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	366, 783
AfiI	CCNNNNNNNGG	1 cut(s)	897
AgsI	TTSAA	7 cut(s)	350, 436, 622, 694, 722, 746, 751
AjnI	CCWGG	2 cut(s)	738, 896
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	596
ApeKI	GCWGC	3 cut(s)	503, 548, 563
ApoI	RAATTY	2 cut(s)	701, 796
AseI	ATTAAT	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	191, 268
AsuNHI	GCTAGC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	701
BbvI	GCAGC	3 cut(s)	490, 535, 550
BccI	CCATC	2 cut(s)	326, 635
BceAI	ACGGC	1 cut(s)	576
BciT130I	CCWGG	2 cut(s)	740, 898
BclI	TGATCA	1 cut(s)	627
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	5 cut(s)	50, 135, 251, 528, 785
BfmI	CTRYAG	3 cut(s)	9, 401, 564
BglII	AGATCT	1 cut(s)	478
BisI	GCNGC	4 cut(s)	504, 549, 564, 769
BlsI	GCNGC	4 cut(s)	505, 550, 565, 770
BmcAI	AGTACT	2 cut(s)	366, 783
Bme1390I	CCNGG	2 cut(s)	740, 898
BmrFI	CCNGG	2 cut(s)	740, 898
BmsI	GCATC	2 cut(s)	96, 622
BmtI	GCTAGC	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	701
BplI	GAGNNNNNCTC	4 cut(s)	7, 39, 560, 592
BpuEI	CTTGAG	1 cut(s)	503
BsaJI	CCNNGG	1 cut(s)	738
Bsc4I	CCNNNNNNNGG	1 cut(s)	897
Bse1I	ACTGG	3 cut(s)	168, 657, 779
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	740, 898
BseDI	CCNNGG	1 cut(s)	738
BseGI	GGATG	1 cut(s)	613
BseLI	CCNNNNNNNGG	1 cut(s)	897
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	2 cut(s)	38, 225
BseNI	ACTGG	3 cut(s)	168, 657, 779
BseXI	GCAGC	3 cut(s)	490, 535, 550
BslI	CCNNNNNNNGG	1 cut(s)	897
BsmAI	GTCTC	1 cut(s)	137
BsmBI	CGTCTC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	478, 601, 627
BspACI	CCGC	2 cut(s)	768, 871
BspCNI	CTCAG	2 cut(s)	37, 226
BspMAI	CTGCAG	1 cut(s)	568
BspOI	GCTAGC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	3 cut(s)	168, 657, 779
BssECI	CCNNGG	1 cut(s)	738
BssMI	GATC	3 cut(s)	478, 601, 627
Bst2UI	CCWGG	2 cut(s)	740, 898
Bst6I	CTCTTC	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	136, 448
BstDEI	CTNAG	5 cut(s)	24, 139, 234, 288, 596
BstF5I	GGATG	1 cut(s)	613
BstKTI	GATC	3 cut(s)	481, 604, 630
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	3 cut(s)	478, 601, 627
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 824
BstNI	CCWGG	2 cut(s)	740, 898
BstSCI	CCNGG	2 cut(s)	738, 896
BstSFI	CTRYAG	3 cut(s)	9, 401, 564
BstV1I	GCAGC	3 cut(s)	490, 535, 550
BstV2I	GAAGAC	1 cut(s)	701
BstX2I	RGATCY	2 cut(s)	478, 601
BstYI	RGATCY	2 cut(s)	478, 601
BtgZI	GCGATG	1 cut(s)	723
BtsCI	GGATG	1 cut(s)	613
BtsI	GCAGTG	1 cut(s)	891
BtsIMutI	CAGTG	3 cut(s)	630, 650, 891
Cac8I	GCNNGC	2 cut(s)	136, 448
Csp6I	GTAC	2 cut(s)	365, 782
CviAII	CATG	1 cut(s)	416
CviQI	GTAC	2 cut(s)	365, 782
DdeI	CTNAG	5 cut(s)	24, 139, 234, 288, 596
DpnI	GATC	3 cut(s)	480, 603, 629
DpnII	GATC	3 cut(s)	478, 601, 627
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	776
Eco57I	CTGAAG	1 cut(s)	59
EcoRII	CCWGG	2 cut(s)	738, 896
EcoRV	GATATC	1 cut(s)	776
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	1 cut(s)	419
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	1 cut(s)	415
FauNDI	CATATG	1 cut(s)	855
FbaI	TGATCA	1 cut(s)	627
Fnu4HI	GCNGC	4 cut(s)	504, 549, 564, 769
FokI	GGATG	1 cut(s)	600
Fsp4HI	GCNGC	4 cut(s)	504, 549, 564, 769
FspBI	CTAG	5 cut(s)	50, 135, 251, 528, 785
GluI	GCNGC	4 cut(s)	504, 549, 564, 769
Hin1II	CATG	1 cut(s)	419
HinfI	GANTC	2 cut(s)	440, 516
HphI	GGTGA	2 cut(s)	191, 268
Hpy188I	TCNGA	2 cut(s)	27, 606
Hpy188III	TCNNGA	2 cut(s)	482, 528
Hpy99I	CGWCG	1 cut(s)	823
HpyAV	CCTTC	4 cut(s)	145, 313, 430, 808
HpyCH4IV	ACGT	1 cut(s)	821
HpyCH4V	TGCA	6 cut(s)	55, 109, 115, 419, 506, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 824
HpyF3I	CTNAG	5 cut(s)	24, 139, 234, 288, 596
HpySE526I	ACGT	1 cut(s)	821
Hsp92II	CATG	1 cut(s)	419
Ksp22I	TGATCA	1 cut(s)	627
Kzo9I	GATC	3 cut(s)	478, 601, 627
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	3 cut(s)	490, 535, 550
LweI	GCATC	2 cut(s)	96, 622
MaeI	CTAG	5 cut(s)	50, 135, 251, 528, 785
MaeII	ACGT	1 cut(s)	821
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	3 cut(s)	480, 603, 629
MboI	GATC	3 cut(s)	478, 601, 627
MboII	GAAGA	9 cut(s)	40, 52, 82, 160, 194, 341, 478, 680, 706
MflI	RGATCY	2 cut(s)	478, 601
MluCI	AATT	8 cut(s)	311, 523, 607, 680, 689, 701, 746, 796
MmeI	TCCRAC	3 cut(s)	219, 261, 911
MnlI	CCTC	6 cut(s)	13, 247, 334, 370, 400, 823
MseI	TTAA	2 cut(s)	314, 357
MspR9I	CCNGG	2 cut(s)	740, 898
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	2 cut(s)	740, 898
MwoI	GCNNNNNNNGC	2 cut(s)	416, 824
NdeI	CATATG	1 cut(s)	855
NdeII	GATC	3 cut(s)	478, 601, 627
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	419
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	440, 516
PflMI	CCANNNNNTGG	1 cut(s)	897
PkrI	GCNGC	4 cut(s)	505, 550, 565, 770
PshBI	ATTAAT	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	738, 896
PspGI	CCWGG	2 cut(s)	738, 896
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	2 cut(s)	478, 601
RsaI	GTAC	2 cut(s)	366, 783
RsaNI	GTAC	2 cut(s)	365, 782
SaqAI	TTAA	2 cut(s)	314, 357
SatI	GCNGC	4 cut(s)	504, 549, 564, 769
Sau3AI	GATC	3 cut(s)	478, 601, 627
ScaI	AGTACT	2 cut(s)	366, 783
ScrFI	CCNGG	2 cut(s)	740, 898
SfaNI	GCATC	2 cut(s)	96, 622
SfcI	CTRYAG	3 cut(s)	9, 401, 564
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	8 cut(s)	311, 523, 607, 680, 689, 701, 746, 796
SsiI	CCGC	2 cut(s)	768, 871
SspMI	CTAG	5 cut(s)	50, 135, 251, 528, 785
StyD4I	CCNGG	2 cut(s)	738, 896
TaiI	ACGT	1 cut(s)	824
TaqI	TCGA	1 cut(s)	375
TasI	AATT	8 cut(s)	311, 523, 607, 680, 689, 701, 746, 796
TatI	WGTACW	2 cut(s)	364, 781
TauI	GCSGC	1 cut(s)	771
TfiI	GAWTC	2 cut(s)	440, 516
Tru1I	TTAA	2 cut(s)	314, 357
Tru9I	TTAA	2 cut(s)	314, 357
TscAI	CASTG	3 cut(s)	637, 657, 898
TseI	GCWGC	3 cut(s)	503, 548, 563
TspDTI	ATGAA	8 cut(s)	141, 174, 312, 332, 681, 690, 726, 872
TspGWI	ACGGA	1 cut(s)	872
TspRI	CASTG	3 cut(s)	637, 657, 898
Van91I	CCANNNNNTGG	1 cut(s)	897
VspI	ATTAAT	1 cut(s)	314
XapI	RAATTY	2 cut(s)	701, 796
XbaI	TCTAGA	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	894
XspI	CTAG	5 cut(s)	50, 135, 251, 528, 785
ZrmI	AGTACT	2 cut(s)	366, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.