FvH4_3g36251

XH XS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000340
Physical Location & Seq
Reverse (-)
31054408 .. 31058524
4117 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36251.t1

Sequence Viewer

Length: 1500 bp
ATGAAAATACAGGTGGTGACGTGTTATTCATGGCACAGGGTTGGTACTGGGGAAAATGGAAACAGGATATCAGGTTTCAAAATGGCTCACAGAGCAGAAGAAATGGATATCGGAAAACTGCAACAAAATGCCGGAGACTCTCTTGAGCAAGACAAAGTCCTTTCCAATTCTGAAGAGAAGCAAAATGATCTTCAGAAAAAACTTGAAGAGGTTGAGGCTGAAAAGAAAGAAATGCACAAAAAGCTGAAGGAAAGTGAAGTCGCCATGAAAGAGCATGAGAAAACCGTAGATGCGTGGCTAGAGGCGGTAGTTATGTATCTTACTGCTGCGAACAAGCACCAGCAGAGTGAAATTCAGATGTACGAGATTCAGGAAAAGCTTGAGCAGAGTGAATCCCAGAATAGAGAGCTTGAGAAGATTGAAGAAGCTCAAAAGAAAGAACTTAAGAAGGCGCTTGAGCAGATTGAAGCTCAAAAGAAGGATCTCGAGCAACACGAGATTAAAATAAAACGAATGAAAGAAAATGAGGAGCTCCGGAAGAAGATCACTGAATTGGAGGATCACAAGGATCAGGCTGAGGAGGTGTTAGATGAGGACGAGTCTCATGAGGACAAGATTGAACGTGAGAATAAGGCCTGGATAGAGATAAGAGAGCTTGAGAAGATTGAAGACGCTCAAACGAAAGAACTTAAGAAGGCGCTTGAGCAGATTGAAGCTCAAAAGAAAGATCTCGAGCATCACAAGATTAAAATAAAACAATTAGAGAGGGTTAATCTTGACCAGGTGAAGGCTACTGAAAATTTGTTAAAACAAAAGAAAGAAAATGAGGAGCTCCGGAAGAAGATCACTGAATTGGAGGATCACATGGATCAGGCTGAGGAGGTGTTAGATGAGGACGAGTCTCATGAGGACAAGCATGATGAGATAGGTGAAATTCAAAATAAGTTAAAGGAGAAGGAAGAAGAGCTGGCCGATATTGAAGCTCTTAACAATACACTTATTGTAAAGGAGCTCAAAAGCAACACTGAACTGCAGGAGGCTCGTACAGAGTTAATCAGAGGATGGGAATCAGCAAGTCGTGCTTTTATTCGTCTCAAGAGAATGGGAGGGATTGACTGCAGGACATTTCAGACTGCATGCAAGAGAAAATATCCCACAGAAGAAATAAATGTAAGGGCAGCAGAACTATGTTCTCTTTGGGAGAAATATATTGGGGATCCAAACTGGCATCCGTTCAAAGTTAGCACGGCTTCCTTTGGGCATTATAAGGAAATTATTAATGAAGAAGATGAAAAACTGAAAAAGTTAAAGAACGATTTTGGTGTTGAAGTTCATCTAGCTGTGTCAACTGCTTTGCTGGAATTGAATGAGTATAATCCTAGTGGTAGGTATCCACTTAATGAACTATGGAACTTCAAAGAAGATAGGAGGGCATCATTGAAAGAGGCAATATTGCATATTATGAAGCAGTTGAAACATAAAAAGAGGAGAACCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XH XS zf-XS

Protein Analysis

500

Amino Acids

58.97

Weight (kDa)

5.45

Isoelectric Point (pI)

54.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 366 - 497 8.7e-52 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1266
AccIII TCCGGA 2 cut(s) 534, 834
AciI CCGC 1 cut(s) 305
AclWI GGATC 7 cut(s) 489, 567, 576, 867, 876, 1211, 1224
AcoI YGGCCR 1 cut(s) 969
AcsI RAATTY 3 cut(s) 351, 799, 933
AcuI CTGAAG 3 cut(s) 176, 192, 266
AfaI GTAC 3 cut(s) 46, 362, 1045
AfiI CCNNNNNNNGG 1 cut(s) 787
AflII CTTAAG 2 cut(s) 443, 689
AflIII ACRYGT 1 cut(s) 20
AjiI CACGTC 1 cut(s) 21
AjnI CCWGG 2 cut(s) 635, 780
Alw21I GWGCWC 3 cut(s) 534, 834, 1014
Alw26I GTCTC 4 cut(s) 129, 606, 906, 1097
AlwI GGATC 7 cut(s) 489, 567, 576, 867, 876, 1211, 1224
Ama87I CYCGRG 2 cut(s) 485, 731
Aor13HI TCCGGA 2 cut(s) 534, 834
AoxI GGCC 2 cut(s) 633, 969
ApeKI GCWGC 2 cut(s) 326, 1178
ApoI RAATTY 3 cut(s) 351, 799, 933
AseI ATTAAT 1 cut(s) 1278
AspLEI GCGC 2 cut(s) 454, 700
AsuHPI GGTGA 3 cut(s) 28, 796, 941
AvaI CYCGRG 2 cut(s) 485, 731
BamHI GGATCC 1 cut(s) 1216
BanII GRGCYC 3 cut(s) 534, 834, 1014
BauI CACGAG 1 cut(s) 494
BbsI GAAGAC 1 cut(s) 675
Bbv12I GWGCWC 3 cut(s) 534, 834, 1014
BbvCI CCTCAGC 2 cut(s) 576, 876
BbvI GCAGC 2 cut(s) 313, 1190
BccI CCATC 1 cut(s) 1056
BceAI ACGGC 1 cut(s) 1263
BcgI CGANNNNNNTGC 2 cut(s) 1022, 1056
BciT130I CCWGG 2 cut(s) 637, 782
BciVI GTATCC 1 cut(s) 1401
BcoDI GTCTC 4 cut(s) 129, 606, 906, 1097
BfaI CTAG 3 cut(s) 299, 1337, 1380
BfmI CTRYAG 2 cut(s) 1031, 1117
BfoI RGCGCY 2 cut(s) 455, 701
BfrI CTTAAG 2 cut(s) 443, 689
BfuI GTATCC 1 cut(s) 1401
BglII AGATCT 1 cut(s) 727
BisI GCNGC 2 cut(s) 327, 1179
BlsI GCNGC 2 cut(s) 328, 1180
Bme1390I CCNGG 2 cut(s) 637, 782
BmeT110I CYCGRG 2 cut(s) 485, 731
BmgBI CACGTC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 1218
BmrFI CCNGG 2 cut(s) 637, 782
BmrI ACTGGG 1 cut(s) 57
BmsI GCATC 4 cut(s) 280, 745, 1237, 1442
BmuI ACTGGG 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 675
Bpu10I CCTNAGC 2 cut(s) 576, 876
BpuEI CTTGAG 7 cut(s) 164, 401, 431, 476, 677, 722, 1079
BsaBI GATNNNNATC 1 cut(s) 1066
BsaWI WCCGGW 2 cut(s) 534, 834
Bsc4I CCNNNNNNNGG 1 cut(s) 787
Bse1I ACTGG 2 cut(s) 52, 1229
Bse8I GATNNNNATC 1 cut(s) 1066
BseAI TCCGGA 2 cut(s) 534, 834
BseBI CCWGG 2 cut(s) 637, 782
BseGI GGATG 2 cut(s) 1067, 1228
BseJI GATNNNNATC 1 cut(s) 1066
BseLI CCNNNNNNNGG 1 cut(s) 787
BseMII CTCAG 2 cut(s) 567, 867
BseNI ACTGG 2 cut(s) 52, 1229
BseRI GAGGAG 4 cut(s) 542, 593, 842, 893
BseXI GCAGC 2 cut(s) 313, 1190
BshFI GGCC 2 cut(s) 635, 971
BsiHKAI GWGCWC 3 cut(s) 534, 834, 1014
BsiHKCI CYCGRG 2 cut(s) 485, 731
BsiSI CCGG 3 cut(s) 132, 535, 835
BslI CCNNNNNNNGG 1 cut(s) 787
BsmAI GTCTC 4 cut(s) 129, 606, 906, 1097
BsmBI CGTCTC 1 cut(s) 1097
BsnI GGCC 2 cut(s) 635, 971
BsoBI CYCGRG 2 cut(s) 485, 731
Bsp1286I GDGCHC 3 cut(s) 534, 834, 1014
Bsp13I TCCGGA 2 cut(s) 534, 834
BspACI CCGC 1 cut(s) 305
BspANI GGCC 2 cut(s) 635, 971
BspCNI CTCAG 2 cut(s) 568, 868
BspEI TCCGGA 2 cut(s) 534, 834
BspHI TCATGA 2 cut(s) 604, 904
BspLI GGNNCC 1 cut(s) 1218
BspMAI CTGCAG 2 cut(s) 1035, 1121
BspPI GGATC 7 cut(s) 489, 567, 576, 867, 876, 1211, 1224
BspQI GCTCTTC 1 cut(s) 957
BspTI CTTAAG 2 cut(s) 443, 689
BsrI ACTGG 2 cut(s) 52, 1229
BssSI CACGAG 1 cut(s) 494
Bst2BI CACGAG 1 cut(s) 494
Bst2UI CCWGG 2 cut(s) 637, 782
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 3 cut(s) 168, 201, 957
BstAFI CTTAAG 2 cut(s) 443, 689
BstAPI GCANNNNNTGC 1 cut(s) 1079
BstC8I GCNNGC 2 cut(s) 969, 1138
BstDEI CTNAG 2 cut(s) 576, 876
BstF5I GGATG 2 cut(s) 1067, 1228
BstH2I RGCGCY 2 cut(s) 455, 701
BstHHI GCGC 2 cut(s) 454, 700
BstMAI GTCTC 4 cut(s) 129, 606, 906, 1097
BstMWI GCNNNNNNNGC 3 cut(s) 92, 241, 1079
BstNI CCWGG 2 cut(s) 637, 782
BstNSI RCATGY 1 cut(s) 1140
BstSCI CCNGG 2 cut(s) 635, 780
BstSFI CTRYAG 2 cut(s) 1031, 1117
BstV1I GCAGC 2 cut(s) 313, 1190
BstV2I GAAGAC 1 cut(s) 675
BstX2I RGATCY 3 cut(s) 481, 727, 1216
BstYI RGATCY 3 cut(s) 481, 727, 1216
BsuI GTATCC 1 cut(s) 1401
BsuRI GGCC 2 cut(s) 635, 971
BtrI CACGTC 1 cut(s) 21
BtsCI GGATG 2 cut(s) 1067, 1228
BtsIMutI CAGTG 3 cut(s) 546, 846, 1023
Cac8I GCNNGC 2 cut(s) 969, 1138
CciI TCATGA 2 cut(s) 604, 904
CfoI GCGC 2 cut(s) 454, 700
CseI GACGC 1 cut(s) 680
CsiI ACCWGGT 1 cut(s) 780
Csp6I GTAC 3 cut(s) 45, 361, 1044
CviAII CATG 8 cut(s) 30, 265, 275, 605, 865, 905, 917, 1137
CviQI GTAC 3 cut(s) 45, 361, 1044
DdeI CTNAG 2 cut(s) 576, 876
EaeI YGGCCR 1 cut(s) 969
Eam1104I CTCTTC 3 cut(s) 168, 201, 957
EarI CTCTTC 3 cut(s) 168, 201, 957
Ecl136II GAGCTC 3 cut(s) 532, 832, 1012
Eco147I AGGCCT 1 cut(s) 635
Eco24I GRGCYC 3 cut(s) 534, 834, 1014
Eco32I GATATC 2 cut(s) 69, 109
Eco53kI GAGCTC 3 cut(s) 532, 832, 1012
Eco57I CTGAAG 3 cut(s) 176, 192, 266
Eco88I CYCGRG 2 cut(s) 485, 731
EcoICRI GAGCTC 3 cut(s) 532, 832, 1012
EcoRII CCWGG 2 cut(s) 635, 780
EcoRV GATATC 2 cut(s) 69, 109
EcoT38I GRGCYC 3 cut(s) 534, 834, 1014
Esp3I CGTCTC 1 cut(s) 1097
FaeI CATG 8 cut(s) 33, 268, 278, 608, 868, 908, 920, 1140
FalI AAGNNNNNCTT 2 cut(s) 1066, 1098
FatI CATG 8 cut(s) 29, 264, 274, 604, 864, 904, 916, 1136
Fnu4HI GCNGC 2 cut(s) 327, 1179
FokI GGATG 2 cut(s) 1074, 1215
FriOI GRGCYC 3 cut(s) 534, 834, 1014
Fsp4HI GCNGC 2 cut(s) 327, 1179
FspBI CTAG 3 cut(s) 299, 1337, 1380
GlaI GCGC 2 cut(s) 453, 699
GluI GCNGC 2 cut(s) 327, 1179
HaeII RGCGCY 2 cut(s) 455, 701
HaeIII GGCC 2 cut(s) 635, 971
HapII CCGG 3 cut(s) 132, 535, 835
HgaI GACGC 1 cut(s) 680
HhaI GCGC 2 cut(s) 454, 700
Hin1II CATG 8 cut(s) 33, 268, 278, 608, 868, 908, 920, 1140
Hin6I GCGC 2 cut(s) 452, 698
HinP1I GCGC 2 cut(s) 452, 698
HincII GTYRAC 1 cut(s) 1347
HindII GTYRAC 1 cut(s) 1347
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 6 cut(s) 137, 367, 392, 599, 899, 1067
HpaII CCGG 3 cut(s) 132, 535, 835
HphI GGTGA 3 cut(s) 28, 796, 941
Hpy166II GTNNAC 1 cut(s) 1347
Hpy188I TCNGA 6 cut(s) 113, 172, 195, 357, 1058, 1131
Hpy8I GTNNAC 1 cut(s) 1347
HpyAV CCTTC 6 cut(s) 241, 442, 472, 688, 781, 949
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 2 cut(s) 20, 622
HpyCH4V TGCA 7 cut(s) 121, 235, 1033, 1119, 1136, 1140, 1456
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 241, 1079
HpyF3I CTNAG 2 cut(s) 576, 876
HpySE526I ACGT 2 cut(s) 20, 622
Hsp92II CATG 8 cut(s) 33, 268, 278, 608, 868, 908, 920, 1140
HspAI GCGC 2 cut(s) 452, 698
Kpn2I TCCGGA 2 cut(s) 534, 834
LguI GCTCTTC 1 cut(s) 957
LmnI GCTCC 5 cut(s) 529, 537, 829, 837, 1009
Lsp1109I GCAGC 2 cut(s) 313, 1190
LweI GCATC 4 cut(s) 280, 745, 1237, 1442
MabI ACCWGGT 1 cut(s) 780
MaeI CTAG 3 cut(s) 299, 1337, 1380
MaeII ACGT 2 cut(s) 20, 622
MaeIII GTNAC 1 cut(s) 16
MflI RGATCY 3 cut(s) 481, 727, 1216
MhlI GDGCHC 3 cut(s) 534, 834, 1014
MluCI AATT 9 cut(s) 166, 351, 551, 758, 799, 851, 933, 1272, 1361
MlyI GAGTC 3 cut(s) 131, 608, 908
MroI TCCGGA 2 cut(s) 534, 834
MspCI CTTAAG 2 cut(s) 443, 689
MspI CCGG 3 cut(s) 132, 535, 835
MspR9I CCNGG 2 cut(s) 637, 782
MvaI CCWGG 2 cut(s) 637, 782
MwoI GCNNNNNNNGC 3 cut(s) 92, 241, 1079
NlaIII CATG 8 cut(s) 33, 268, 278, 608, 868, 908, 920, 1140
NlaIV GGNNCC 1 cut(s) 1218
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 1 cut(s) 1140
PaeI GCATGC 1 cut(s) 1140
PaeR7I CTCGAG 2 cut(s) 485, 731
PagI TCATGA 2 cut(s) 604, 904
PceI AGGCCT 1 cut(s) 635
PciSI GCTCTTC 1 cut(s) 957
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PfeI GAWTC 3 cut(s) 367, 392, 1067
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 328, 1180
PleI GAGTC 3 cut(s) 131, 607, 907
PpsI GAGTC 3 cut(s) 131, 607, 907
PshBI ATTAAT 1 cut(s) 1278
PsiI TTATAA 1 cut(s) 1266
Psp124BI GAGCTC 3 cut(s) 534, 834, 1014
Psp6I CCWGG 2 cut(s) 635, 780
PspGI CCWGG 2 cut(s) 635, 780
PspN4I GGNNCC 1 cut(s) 1218
PstI CTGCAG 2 cut(s) 1035, 1121
PsuI RGATCY 3 cut(s) 481, 727, 1216
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 3 cut(s) 46, 362, 1045
RsaNI GTAC 3 cut(s) 45, 361, 1044
SacI GAGCTC 3 cut(s) 534, 834, 1014
SapI GCTCTTC 1 cut(s) 957
SatI GCNGC 2 cut(s) 327, 1179
SchI GAGTC 3 cut(s) 131, 608, 908
ScrFI CCNGG 2 cut(s) 637, 782
SduI GDGCHC 3 cut(s) 534, 834, 1014
SexAI ACCWGGT 1 cut(s) 780
SfaNI GCATC 4 cut(s) 280, 745, 1237, 1442
SfcI CTRYAG 2 cut(s) 1031, 1117
Sfr274I CTCGAG 2 cut(s) 485, 731
SlaI CTCGAG 2 cut(s) 485, 731
SphI GCATGC 1 cut(s) 1140
Sse9I AATT 9 cut(s) 166, 351, 551, 758, 799, 851, 933, 1272, 1361
SseBI AGGCCT 1 cut(s) 635
SsiI CCGC 1 cut(s) 305
SspI AATATT 1 cut(s) 1452
SspMI CTAG 3 cut(s) 299, 1337, 1380
SstI GAGCTC 3 cut(s) 534, 834, 1014
StuI AGGCCT 1 cut(s) 635
StyD4I CCNGG 2 cut(s) 635, 780
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 2 cut(s) 23, 625
TaqI TCGA 2 cut(s) 486, 732
TasI AATT 9 cut(s) 166, 351, 551, 758, 799, 851, 933, 1272, 1361
TfiI GAWTC 3 cut(s) 367, 392, 1067
TscAI CASTG 3 cut(s) 553, 853, 1030
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 2 cut(s) 326, 1178
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 9 cut(s) 17, 18, 281, 530, 1296, 1305, 1322, 1416, 1478
TspGWI ACGGA 1 cut(s) 1221
TspRI CASTG 3 cut(s) 553, 853, 1030
Tth111I GACNNNGTC 1 cut(s) 155
Vha464I CTTAAG 2 cut(s) 443, 689
VspI ATTAAT 1 cut(s) 1278
XapI RAATTY 3 cut(s) 351, 799, 933
XceI RCATGY 1 cut(s) 1140
XhoI CTCGAG 2 cut(s) 485, 731
XspI CTAG 3 cut(s) 299, 1337, 1380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.