Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8459613.1

Orthogroup ID

OG0000340

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1202

Gene Structure 1202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8459613.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 494 bp

ggcttgaagaatcagcaagcgatgcttctattggggtgaagataatggcagaccttgacaccaaaccatttattgatgcaacgcagagaatgacttcaataaacttttctgaaagagtatcagataaggccatggaggtaggttctctctgggaggaaaatcttagagatccgcgttggcatccattcaaaattatcatggacgaagaaggaaagacagaggaagttattgatgaagaagatgagaaaccgaagagcttgaagacggcctttggtgatgaagtatatgaggctgtgacaactgccttggcagaattgagtgagtacaatcccactagtaggtatccaatgctagagctgtggaatttcacagacgggagaagggcatcattaggagagggagtatcctacattgtgaaccattggaaaccaaggaaacggagtactgatcaatgctccaacgggcagaataagcggtccgactggaaaacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

163

Amino Acids

18.7

Weight (kDa)

4.78

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica	Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis	pycom01g15630
rosa_chinensis	RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata	RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora	Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii	Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa	Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha	Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana	Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	174
AciI	CCGC	2 cut(s)	172, 474
AclWI	GGATC	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	363
AfaI	GTAC	2 cut(s)	325, 444
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	4 cut(s)	7, 98, 189, 261
AhlI	ACTAGT	1 cut(s)	334
AluBI	AGCT	2 cut(s)	257, 357
AluI	AGCT	2 cut(s)	257, 357
AlwI	GGATC	1 cut(s)	163
AoxI	GGCC	2 cut(s)	128, 266
ApoI	RAATTY	1 cut(s)	363
Asp700I	GAANNNNTTC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	2 cut(s)	48, 286
AvaII	GGWCC	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	268
BceAI	ACGGC	1 cut(s)	281
BciVI	GTATCC	2 cut(s)	353, 414
BclI	TGATCA	1 cut(s)	447
BcuI	ACTAGT	1 cut(s)	334
BfaI	CTAG	2 cut(s)	335, 352
BfuI	GTATCC	2 cut(s)	353, 414
BmcAI	AGTACT	1 cut(s)	444
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	476
BmsI	GCATC	4 cut(s)	12, 66, 189, 394
BpiI	GAAGAC	1 cut(s)	268
BsaJI	CCNNGG	3 cut(s)	131, 305, 430
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	487
BseDI	CCNNGG	3 cut(s)	131, 305, 430
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	487
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	130, 268
BslI	CCNNNNNNNGG	1 cut(s)	338
BsnI	GGCC	2 cut(s)	130, 268
Bsp143I	GATC	2 cut(s)	168, 447
Bsp19I	CCATGG	1 cut(s)	131
BspACI	CCGC	2 cut(s)	172, 474
BspANI	GGCC	2 cut(s)	130, 268
BspFNI	CGCG	1 cut(s)	174
BspPI	GGATC	1 cut(s)	163
BspQI	GCTCTTC	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	487
BssECI	CCNNGG	3 cut(s)	131, 305, 430
BssMI	GATC	2 cut(s)	168, 447
BssT1I	CCWWGG	3 cut(s)	131, 305, 430
Bst6I	CTCTTC	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	1 cut(s)	163
BstDSI	CCRYGG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	2 cut(s)	171, 450
BstMBI	GATC	2 cut(s)	168, 447
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 471
BstUI	CGCG	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuI	GTATCC	2 cut(s)	353, 414
BsuRI	GGCC	2 cut(s)	130, 268
BtgI	CCRYGG	1 cut(s)	131
BtgZI	GCGATG	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	476
CpoI	CGGWCCG	1 cut(s)	476
Csp6I	GTAC	2 cut(s)	324, 443
CspI	CGGWCCG	1 cut(s)	476
CviAII	CATG	2 cut(s)	132, 198
CviJI	RGCY	6 cut(s)	3, 130, 257, 268, 292, 357
CviKI_1	RGCY	6 cut(s)	3, 130, 257, 268, 292, 357
CviQI	GTAC	2 cut(s)	324, 443
DdeI	CTNAG	1 cut(s)	163
DpnI	GATC	2 cut(s)	170, 449
DpnII	GATC	2 cut(s)	168, 447
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
Eco130I	CCWWGG	3 cut(s)	131, 305, 430
Eco47I	GGWCC	1 cut(s)	476
EcoT14I	CCWWGG	3 cut(s)	131, 305, 430
ErhI	CCWWGG	3 cut(s)	131, 305, 430
FaeI	CATG	2 cut(s)	135, 201
FaiI	YATR	5 cut(s)	133, 199, 285, 287, 492
FalI	AAGNNNNNCTT	4 cut(s)	9, 41, 253, 285
FatI	CATG	2 cut(s)	131, 197
FbaI	TGATCA	1 cut(s)	447
FokI	GGATG	1 cut(s)	167
FspBI	CTAG	2 cut(s)	335, 352
HaeIII	GGCC	2 cut(s)	130, 268
Hin1II	CATG	2 cut(s)	135, 201
HinfI	GANTC	1 cut(s)	10
HphI	GGTGA	2 cut(s)	48, 286
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	3 cut(s)	111, 123, 480
Hpy8I	GTNNAC	1 cut(s)	417
HpyAV	CCTTC	2 cut(s)	202, 374
HpyCH4V	TGCA	1 cut(s)	79
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 471
HpyF3I	CTNAG	1 cut(s)	163
Hsp92II	CATG	2 cut(s)	135, 201
Ksp22I	TGATCA	1 cut(s)	447
Kzo9I	GATC	2 cut(s)	168, 447
LguI	GCTCTTC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	460
LpnPI	CCDG	2 cut(s)	135, 468
LweI	GCATC	4 cut(s)	12, 66, 189, 394
MaeI	CTAG	2 cut(s)	335, 352
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	2 cut(s)	170, 449
MboI	GATC	2 cut(s)	168, 447
MboII	GAAGA	7 cut(s)	19, 51, 217, 247, 250, 264, 273
MflI	RGATCY	1 cut(s)	168
MluCI	AATT	3 cut(s)	191, 313, 363
MmeI	TCCRAC	1 cut(s)	482
MnlI	CCTC	5 cut(s)	129, 147, 213, 282, 390
MroXI	GAANNNNTTC	1 cut(s)	93
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	22, 471
NcoI	CCATGG	1 cut(s)	131
NdeII	GATC	2 cut(s)	168, 447
NlaIII	CATG	2 cut(s)	135, 201
NmuCI	GTSAC	1 cut(s)	294
PciSI	GCTCTTC	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	168
RsaI	GTAC	2 cut(s)	325, 444
RsaNI	GTAC	2 cut(s)	324, 443
Rsr2I	CGGWCCG	1 cut(s)	476
RsrII	CGGWCCG	1 cut(s)	476
SapI	GCTCTTC	1 cut(s)	247
Sau3AI	GATC	2 cut(s)	168, 447
Sau96I	GGNCC	1 cut(s)	476
ScaI	AGTACT	1 cut(s)	444
SetI	ASST	6 cut(s)	56, 140, 144, 259, 343, 359
SfaNI	GCATC	4 cut(s)	12, 66, 189, 394
SinI	GGWCC	1 cut(s)	476
SpeI	ACTAGT	1 cut(s)	334
Sse9I	AATT	3 cut(s)	191, 313, 363
SsiI	CCGC	2 cut(s)	172, 474
SspMI	CTAG	2 cut(s)	335, 352
StyI	CCWWGG	3 cut(s)	131, 305, 430
TasI	AATT	3 cut(s)	191, 313, 363
TatI	WGTACW	2 cut(s)	323, 442
TfiI	GAWTC	1 cut(s)	10
TseFI	GTSAC	1 cut(s)	294
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	2 cut(s)	248, 293
TspGWI	ACGGA	1 cut(s)	453
VpaK11BI	GGWCC	1 cut(s)	476
XapI	RAATTY	1 cut(s)	363
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	2 cut(s)	335, 352
ZrmI	AGTACT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.