Prupe.6G075600_v2.0.a1

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000340
Physical Location & Seq
Reverse (-)
5195958 .. 5199817
3860 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G075600.1

Sequence Viewer

Length: 1470 bp
AAAAAATCTTTTCATCTTCCTAAAACCCCAAGGTCAGTGTTCTGTTGTCTGGGGGCATCCATAGAGAGAGCACTTGCTAAAAAGTTTGAAATATCTCAAGTTTCAGAAGAAATGGATATTGCAAAGTTGAAACAAAATGTGCGTGACCACCTGGAGAAGGTATTCTTGGAGCAGGATAAAGCCTTAGCCAAATCTGAAGTTCAAAAGAATGAAAATAAGAAAAAGCTTGAGCATATTGAGGCACAGAAGAAAGAGCTCATGAAAAAGCTTGAGCAGAGTGAAGCCAAGAAGAATGAACTACAGGAAAAGCATGCGCAAAGTGAAGCCCAGAAGAAGGAGCTTCAGAAAAAGCACGAGCAGAGTGAAGCCCAGAAGAAAGAGCTTCAGAAAAAGCATGAGCAAAGTGAGGCTCAGAAGAAAGAGCTTCAGAAAAAGCATGAGCAGAGTGAGGCTCAGAAGAAAGAGCTTCAGAAAAAGTTTGAGCAGAGTGAATCGCACAATAAAGATCTTCAGAAAAATCTTGATCACAGTGAAGCTCAGAAGAAAGAGCTTCAGAAAAAGCTTGAGCAAAGTGAAGCACAAAAGAATGGGCTTCAATTTCGTAAGCAGCGTGAGATACAACTAATGAAACAAATGTATGGGGAAACTGTCTTAGAGAAAAGGATGGCTGATGAAAAGATGATAGAGAAAAAGAAAGAAAATGAGAAACTTCATAGGAAAATAATTGAATTGGAAAAGTTGTGTGATCAAGACAAGGATCAAGCTGAGGTTAAGGATGGCAAGCAGGAAAAAACAGATGAGGATGATGAGGATGAGGATGAGGACCAAGAGCAGGATCAGGATGAGGACCAAGAGCAGGATCCGGATGAGGTTAACGATGATGATGGGAATGAGAAGATGAAGAAAATTCGAAAAAAGTTAAAGGAGACGGAAGAGGAGTTGGAATATGCTGAAGCTCATAACCATAAACTTATTGCGAAGGAGTCTGAATTAGAGGAGGCTCGTAAGGAGTTAATCTCTGGATGGGATTCAGCAAGTCGTGCTTTTATTGGCGTGAAGAGAATGGGAGAGCTTGAAAGCAAACCATTTCAAACTGTATGCAAGAGAAAATATCCTATGGATGAAGCAGATGACCAGGCAGCGGCACTATGTTCTCTGTGGGAGAGTTATCTTAGGGATTCTTGCTGGAAACCATTCAAAACTATAAGGGTAGCCTTTCGTCAACAACCGAAGATAACTATTGATGAGGGAGATGAAAAACTGAAAAAATTAAAGGACGAGTTTGGTGATGAAGTCTACAATGCTGTGACAACTGCCTTGCTGGAATCGAAAGAGTATAATAGTCACCATTGGAGGTGTACAGTATCAGAATTATGGAACTTTAAACAAGGGAGGAGAGCATCATTAAAAGAGGGTGTCTCGTATTTACTGAAGCAGTTGAAACTGCAGAAAAGGAGAAGATCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

490

Amino Acids

57.8

Weight (kDa)

6.62

Isoelectric Point (pI)

62.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 315
AccI GTMKAC 1 cut(s) 1296
AccIII TCCGGA 1 cut(s) 862
AciI CCGC 1 cut(s) 1142
AclWI GGATC 4 cut(s) 765, 843, 854, 867
AcsI RAATTY 1 cut(s) 906
AcuI CTGAAG 9 cut(s) 216, 326, 368, 410, 452, 494, 536, 972, 1451
AfaI GTAC 1 cut(s) 1360
AfiI CCNNNNNNNGG 5 cut(s) 157, 334, 832, 856, 1141
AgsI TTSAA 9 cut(s) 89, 130, 203, 596, 728, 1076, 1091, 1198, 1441
AjnI CCWGG 2 cut(s) 150, 1134
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
Alw21I GWGCWC 2 cut(s) 73, 258
Alw26I GTCTC 2 cut(s) 920, 1423
AlwI GGATC 4 cut(s) 765, 843, 854, 867
Aor13HI TCCGGA 1 cut(s) 862
ApeKI GCWGC 2 cut(s) 607, 1139
ApoI RAATTY 1 cut(s) 906
Asp700I GAANNNNTTC 2 cut(s) 161, 1193
AspLEI GCGC 1 cut(s) 316
AspS9I GGNCC 2 cut(s) 823, 847
AsuHPI GGTGA 2 cut(s) 1298, 1337
AsuII TTCGAA 1 cut(s) 910
AvaII GGWCC 2 cut(s) 823, 847
BamHI GGATCC 1 cut(s) 859
BanII GRGCYC 1 cut(s) 258
BauI CACGAG 1 cut(s) 353
Bbv12I GWGCWC 2 cut(s) 73, 258
BbvCI CCTCAGC 1 cut(s) 765
BbvI GCAGC 2 cut(s) 619, 1151
BccI CCATC 4 cut(s) 658, 770, 878, 1017
BciT130I CCWGG 2 cut(s) 152, 1136
BclI TGATCA 2 cut(s) 523, 745
BcoDI GTCTC 2 cut(s) 920, 1423
BfmI CTRYAG 2 cut(s) 299, 1445
BglII AGATCT 1 cut(s) 505
BisI GCNGC 3 cut(s) 608, 1140, 1143
BlsI GCNGC 3 cut(s) 609, 1141, 1144
Bme1390I CCNGG 2 cut(s) 152, 1136
Bme18I GGWCC 2 cut(s) 823, 847
BmgT120I GGNCC 2 cut(s) 823, 847
BmiI GGNNCC 1 cut(s) 861
BmrFI CCNGG 2 cut(s) 152, 1136
BmsI GCATC 2 cut(s) 65, 1409
BplI GAGNNNNNCTC 6 cut(s) 436, 468, 1001, 1033, 1403, 1435
BpmI CTGGAG 1 cut(s) 173
Bpu10I CCTNAGC 2 cut(s) 184, 765
Bpu14I TTCGAA 1 cut(s) 910
BpuEI CTTGAG 4 cut(s) 81, 248, 290, 584
BsaJI CCNNGG 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 862
Bsc4I CCNNNNNNNGG 5 cut(s) 157, 334, 832, 856, 1141
BseAI TCCGGA 1 cut(s) 862
BseBI CCWGG 2 cut(s) 152, 1136
BseDI CCNNGG 1 cut(s) 29
BseLI CCNNNNNNNGG 5 cut(s) 157, 334, 832, 856, 1141
BseMII CTCAG 4 cut(s) 425, 467, 551, 756
BseRI GAGGAG 3 cut(s) 950, 1010, 1408
BseXI GCAGC 2 cut(s) 619, 1151
BsiHKAI GWGCWC 2 cut(s) 73, 258
BsiSI CCGG 1 cut(s) 863
BslI CCNNNNNNNGG 5 cut(s) 157, 334, 832, 856, 1141
BsmAI GTCTC 2 cut(s) 920, 1423
BsmBI CGTCTC 1 cut(s) 920
Bsp119I TTCGAA 1 cut(s) 910
Bsp1286I GDGCHC 2 cut(s) 73, 258
Bsp13I TCCGGA 1 cut(s) 862
Bsp1407I TGTACA 1 cut(s) 1358
Bsp143I GATC 7 cut(s) 505, 523, 745, 757, 835, 859, 1460
BspACI CCGC 1 cut(s) 1142
BspCNI CTCAG 4 cut(s) 424, 466, 550, 757
BspEI TCCGGA 1 cut(s) 862
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 861
BspMAI CTGCAG 1 cut(s) 1449
BspPI GGATC 4 cut(s) 765, 843, 854, 867
BspT104I TTCGAA 1 cut(s) 910
BsrGI TGTACA 1 cut(s) 1358
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 7 cut(s) 505, 523, 745, 757, 835, 859, 1460
BssSI CACGAG 1 cut(s) 353
BssT1I CCWWGG 1 cut(s) 29
Bst2BI CACGAG 1 cut(s) 353
Bst2UI CCWGG 2 cut(s) 152, 1136
Bst4CI ACNGT 4 cut(s) 530, 649, 1096, 1363
Bst6I CTCTTC 2 cut(s) 927, 1052
BstAPI GCANNNNNTGC 1 cut(s) 1040
BstAUI TGTACA 1 cut(s) 1358
BstBI TTCGAA 1 cut(s) 910
BstC8I GCNNGC 2 cut(s) 312, 782
BstDEI CTNAG 7 cut(s) 184, 411, 453, 537, 652, 765, 1172
BstENI CCTNNNNNAGG 1 cut(s) 155
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 7 cut(s) 508, 526, 748, 760, 838, 862, 1463
BstMAI GTCTC 2 cut(s) 920, 1423
BstMBI GATC 7 cut(s) 505, 523, 745, 757, 835, 859, 1460
BstMWI GCNNNNNNNGC 1 cut(s) 1040
BstNI CCWGG 2 cut(s) 152, 1136
BstNSI RCATGY 1 cut(s) 314
BstSCI CCNGG 2 cut(s) 150, 1134
BstSFI CTRYAG 2 cut(s) 299, 1445
BstV1I GCAGC 2 cut(s) 619, 1151
BstX2I RGATCY 2 cut(s) 505, 859
BstYI RGATCY 2 cut(s) 505, 859
BtsIMutI CAGTG 2 cut(s) 42, 535
Cac8I GCNNGC 2 cut(s) 312, 782
CciI TCATGA 1 cut(s) 258
CfoI GCGC 1 cut(s) 316
Cfr13I GGNCC 2 cut(s) 823, 847
Csp6I GTAC 1 cut(s) 1359
CviAII CATG 4 cut(s) 259, 311, 395, 437
CviQI GTAC 1 cut(s) 1359
DdeI CTNAG 7 cut(s) 184, 411, 453, 537, 652, 765, 1172
DpnI GATC 7 cut(s) 507, 525, 747, 759, 837, 861, 1462
DpnII GATC 7 cut(s) 505, 523, 745, 757, 835, 859, 1460
DraI TTTAAA 1 cut(s) 1384
Eam1104I CTCTTC 2 cut(s) 927, 1052
EarI CTCTTC 2 cut(s) 927, 1052
Ecl136II GAGCTC 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 258
Eco47I GGWCC 2 cut(s) 823, 847
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 9 cut(s) 216, 326, 368, 410, 452, 494, 536, 972, 1451
EcoICRI GAGCTC 1 cut(s) 256
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoRII CCWGG 2 cut(s) 150, 1134
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 29
Esp3I CGTCTC 1 cut(s) 920
FaeI CATG 4 cut(s) 262, 314, 398, 440
FalI AAGNNNNNCTT 4 cut(s) 149, 181, 1027, 1059
FatI CATG 4 cut(s) 258, 310, 394, 436
FbaI TGATCA 2 cut(s) 523, 745
FblI GTMKAC 1 cut(s) 1296
Fnu4HI GCNGC 3 cut(s) 608, 1140, 1143
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 3 cut(s) 608, 1140, 1143
FspI TGCGCA 1 cut(s) 315
GlaI GCGC 1 cut(s) 315
GluI GCNGC 3 cut(s) 608, 1140, 1143
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 1 cut(s) 863
HhaI GCGC 1 cut(s) 316
Hin1II CATG 4 cut(s) 262, 314, 398, 440
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HincII GTYRAC 2 cut(s) 874, 1223
HindII GTYRAC 2 cut(s) 874, 1223
HindIII AAGCTT 3 cut(s) 224, 266, 560
HinfI GANTC 5 cut(s) 491, 983, 1028, 1178, 1325
HpaI GTTAAC 1 cut(s) 874
HpaII CCGG 1 cut(s) 863
HphI GGTGA 2 cut(s) 1298, 1337
Hpy166II GTNNAC 4 cut(s) 874, 1223, 1297, 1359
Hpy188III TCNNGA 6 cut(s) 259, 521, 749, 839, 863, 1020
Hpy8I GTNNAC 4 cut(s) 874, 1223, 1297, 1359
HpyAV CCTTC 3 cut(s) 151, 328, 973
HpyCH4III ACNGT 4 cut(s) 530, 649, 1096, 1363
HpyCH4V TGCA 3 cut(s) 122, 1101, 1447
HpyF10VI GCNNNNNNNGC 1 cut(s) 1040
HpyF3I CTNAG 7 cut(s) 184, 411, 453, 537, 652, 765, 1172
Hsp92II CATG 4 cut(s) 262, 314, 398, 440
HspAI GCGC 1 cut(s) 314
Kpn2I TCCGGA 1 cut(s) 862
Ksp22I TGATCA 2 cut(s) 523, 745
KspAI GTTAAC 1 cut(s) 874
Kzo9I GATC 7 cut(s) 505, 523, 745, 757, 835, 859, 1460
LmnI GCTCC 2 cut(s) 169, 337
Lsp1109I GCAGC 2 cut(s) 619, 1151
LweI GCATC 2 cut(s) 65, 1409
MaeIII GTNAC 3 cut(s) 143, 1306, 1343
MalI GATC 7 cut(s) 507, 525, 747, 759, 837, 861, 1462
MboI GATC 7 cut(s) 505, 523, 745, 757, 835, 859, 1460
MflI RGATCY 2 cut(s) 505, 859
MhlI GDGCHC 2 cut(s) 73, 258
MluCI AATT 7 cut(s) 596, 723, 728, 906, 989, 1268, 1370
MlyI GAGTC 1 cut(s) 992
MmeI TCCRAC 1 cut(s) 921
MroI TCCGGA 1 cut(s) 862
MroXI GAANNNNTTC 2 cut(s) 161, 1193
MseI TTAA 7 cut(s) 771, 873, 920, 1013, 1271, 1383, 1406
MspA1I CMGCKG 1 cut(s) 1142
MspI CCGG 1 cut(s) 863
MspR9I CCNGG 2 cut(s) 152, 1136
MvaI CCWGG 2 cut(s) 152, 1136
MwoI GCNNNNNNNGC 1 cut(s) 1040
NdeII GATC 7 cut(s) 505, 523, 745, 757, 835, 859, 1460
NlaIII CATG 4 cut(s) 262, 314, 398, 440
NlaIV GGNNCC 1 cut(s) 861
NmuCI GTSAC 3 cut(s) 143, 1306, 1343
NsbI TGCGCA 1 cut(s) 315
NspI RCATGY 1 cut(s) 314
NspV TTCGAA 1 cut(s) 910
PaeI GCATGC 1 cut(s) 314
PagI TCATGA 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 607
PdmI GAANNNNTTC 2 cut(s) 161, 1193
PfeI GAWTC 4 cut(s) 491, 1028, 1178, 1325
PkrI GCNGC 3 cut(s) 609, 1141, 1144
PleI GAGTC 1 cut(s) 991
PpsI GAGTC 1 cut(s) 991
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 2 cut(s) 150, 1134
PspGI CCWGG 2 cut(s) 150, 1134
PspN4I GGNNCC 1 cut(s) 861
PspPI GGNCC 2 cut(s) 823, 847
PstI CTGCAG 1 cut(s) 1449
PsuI RGATCY 2 cut(s) 505, 859
RsaI GTAC 1 cut(s) 1360
RsaNI GTAC 1 cut(s) 1359
SacI GAGCTC 1 cut(s) 258
SaqAI TTAA 7 cut(s) 771, 873, 920, 1013, 1271, 1383, 1406
SatI GCNGC 3 cut(s) 608, 1140, 1143
Sau3AI GATC 7 cut(s) 505, 523, 745, 757, 835, 859, 1460
Sau96I GGNCC 2 cut(s) 823, 847
SchI GAGTC 1 cut(s) 992
ScrFI CCNGG 2 cut(s) 152, 1136
SduI GDGCHC 2 cut(s) 73, 258
SfaNI GCATC 2 cut(s) 65, 1409
SfcI CTRYAG 2 cut(s) 299, 1445
SfuI TTCGAA 1 cut(s) 910
SinI GGWCC 2 cut(s) 823, 847
SmlI CTYRAG 4 cut(s) 96, 227, 269, 563
SmoI CTYRAG 4 cut(s) 96, 227, 269, 563
SphI GCATGC 1 cut(s) 314
Sse9I AATT 7 cut(s) 596, 723, 728, 906, 989, 1268, 1370
SsiI CCGC 1 cut(s) 1142
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 150, 1134
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 4 cut(s) 530, 649, 1096, 1363
TaqI TCGA 2 cut(s) 910, 1328
TasI AATT 7 cut(s) 596, 723, 728, 906, 989, 1268, 1370
TatI WGTACW 1 cut(s) 1358
TauI GCSGC 1 cut(s) 1145
TfiI GAWTC 4 cut(s) 491, 1028, 1178, 1325
Tru1I TTAA 7 cut(s) 771, 873, 920, 1013, 1271, 1383, 1406
Tru9I TTAA 7 cut(s) 771, 873, 920, 1013, 1271, 1383, 1406
TscAI CASTG 2 cut(s) 42, 535
TseFI GTSAC 3 cut(s) 143, 1306, 1343
TseI GCWGC 2 cut(s) 607, 1139
Tsp45I GTSAC 3 cut(s) 143, 1306, 1343
TspGWI ACGGA 1 cut(s) 944
TspRI CASTG 2 cut(s) 42, 535
VpaK11BI GGWCC 2 cut(s) 823, 847
XagI CCTNNNNNAGG 1 cut(s) 155
XapI RAATTY 1 cut(s) 906
XceI RCATGY 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 1296
XmnI GAANNNNTTC 2 cut(s) 161, 1193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.