Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000340

Physical Location & Seq

Genomic Coordinates Forward (+)

73744072 .. 73747346

Gene Structure 3275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG428500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTCTCATAGATCAGAAGAAATGAATCTTGGACAATTACGGCAAATTGCGCGTGACCACCTTGAGAAAGTGTTTATAGAACAGGATGTAGCCTTGTTGAAATCTGAAGCCCAAAAGCTTGATCTTAAGAAAGTGCTTGACCAGAGCGAGGCTCAGAAGAAAGAGCTGAAGATAAAGCTAGTGCAAAGAGAAAACGAGAAGAGAGAGCTTGAGAATGATATTGAGCAGATTGAGATGCAACTGCAAAAAGTGAATGAAAAGGCTGGCTTAGAGACAAAGAAGGCTGATGAACTGGTGTTATGGTTGGGTGAAGAACGAAAGAAATGGGAGAAAGAAAAGAATATACTTCACAGGAAAGTAACTGAGTTGGAGAAACAGCTAGAGGTGAAAAAGAGCTACATTGATGAGTTGGAAGCTAAGACCAATGAAATAAAAGAAAAGTTAATGAAGGAAAAGGAAGATGAATTGGAGGATATTGAAGCACTTAACCAAGTACTTATTGTCGAGGGGAATAACAAGAATGCTGAACTACAGGAGGCTCGTCATGCAATGATTATGGGATTGAAGGAATCAGCAAGCAACACTATTGGTGTGAAGATAATGGGAGATCTTGAGAAACAGCCATTTGTTGCTGCAACCAAGAGAATCAACAATTCTAGAAAATATAGAAAGAGAGATGCTGATAATACGGCTGCAGAGCTATGCTCTCTTTGGGAGCAATATCTTAGAGATCCAAATTGGCATCCATTCAAAATTATCACTGATAAAGATGGAAAGACACTGGAAGTTATTGATGAAGATGATGAAAAATTGGAGGACTTGAAGACAGAATTTGGTGATGAGGTTTTTGAAGCTGTGAAAACTGCCCTGGTTGAATTGAACGAGTATAATCCAAGTGGCAGATATCCAGTACTAGAGCTTTGGAATTTCATGGAAAACAGGAAGGCGACGTTAGCAGAGGGTGTATCCCATCTACTGAACCATATGAAACCTAATAAGCGGAGAAGTGTTCGTCCAACCACTGCCTGGAAGCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

346

Amino Acids

40.5

Weight (kDa)

5.59

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	199 - 335	3.4e-51	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica	Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis	pycom01g15630
rosa_chinensis	RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata	RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora	Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii	Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa	Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha	Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana	Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1026
AccII	CGCG	1 cut(s)	52
AciI	CCGC	1 cut(s)	1000
AclWI	GGATC	1 cut(s)	725
AcsI	RAATTY	2 cut(s)	830, 925
AcuI	CTGAAG	2 cut(s)	126, 188
AfaI	GTAC	2 cut(s)	495, 912
AfiI	CCNNNNNNNGG	2 cut(s)	148, 1026
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	8 cut(s)	100, 479, 565, 751, 823, 851, 875, 880
AjnI	CCWGG	2 cut(s)	867, 1025
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
Alw26I	GTCTC	2 cut(s)	9, 266
AlwI	GGATC	1 cut(s)	725
ApeKI	GCWGC	2 cut(s)	632, 692
ApoI	RAATTY	2 cut(s)	830, 925
AspLEI	GCGC	1 cut(s)	52
AsuHPI	GGTGA	3 cut(s)	320, 397, 848
BbsI	GAAGAC	1 cut(s)	830
BbvI	GCAGC	2 cut(s)	619, 679
BccI	CCATC	2 cut(s)	764, 978
BceAI	ACGGC	2 cut(s)	56, 705
BciT130I	CCWGG	2 cut(s)	869, 1027
BciVI	GTATCC	1 cut(s)	976
BcoDI	GTCTC	2 cut(s)	9, 266
BfaI	CTAG	4 cut(s)	179, 380, 657, 914
BfmI	CTRYAG	2 cut(s)	530, 693
BfrI	CTTAAG	1 cut(s)	125
BfuI	GTATCC	1 cut(s)	976
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	2 cut(s)	633, 693
BlsI	GCNGC	2 cut(s)	634, 694
BmcAI	AGTACT	2 cut(s)	495, 912
Bme1390I	CCNGG	2 cut(s)	869, 1027
BmrFI	CCNGG	2 cut(s)	869, 1027
BmsI	GCATC	3 cut(s)	225, 667, 751
BpiI	GAAGAC	1 cut(s)	830
BplI	GAGNNNNNCTC	4 cut(s)	136, 168, 689, 721
BpuEI	CTTGAG	3 cut(s)	83, 230, 632
BsaJI	CCNNGG	1 cut(s)	867
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 1026
Bse1I	ACTGG	3 cut(s)	297, 786, 908
Bse3DI	GCAATG	1 cut(s)	555
BseBI	CCWGG	2 cut(s)	869, 1027
BseDI	CCNNGG	1 cut(s)	867
BseGI	GGATG	2 cut(s)	91, 742
BseLI	CCNNNNNNNGG	2 cut(s)	148, 1026
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	2 cut(s)	167, 354
BseNI	ACTGG	3 cut(s)	297, 786, 908
BseXI	GCAGC	2 cut(s)	619, 679
Bsh1236I	CGCG	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	148, 1026
BsmAI	GTCTC	2 cut(s)	9, 266
BsmI	GAATGC	1 cut(s)	526
Bsp143I	GATC	4 cut(s)	11, 121, 607, 730
BspACI	CCGC	1 cut(s)	1000
BspCNI	CTCAG	2 cut(s)	166, 355
BspFNI	CGCG	1 cut(s)	52
BspMAI	CTGCAG	1 cut(s)	697
BspPI	GGATC	1 cut(s)	725
BspTI	CTTAAG	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	555
BsrI	ACTGG	3 cut(s)	297, 786, 908
BssECI	CCNNGG	1 cut(s)	867
BssMI	GATC	4 cut(s)	11, 121, 607, 730
Bst2UI	CCWGG	2 cut(s)	869, 1027
Bst6I	CTCTTC	1 cut(s)	194
BstAFI	CTTAAG	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	265, 577
BstDEI	CTNAG	5 cut(s)	153, 268, 363, 417, 725
BstF5I	GGATG	2 cut(s)	91, 742
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	4 cut(s)	14, 124, 610, 733
BstMAI	GTCTC	2 cut(s)	9, 266
BstMBI	GATC	4 cut(s)	11, 121, 607, 730
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 545, 953
BstNI	CCWGG	2 cut(s)	869, 1027
BstSCI	CCNGG	2 cut(s)	867, 1025
BstSFI	CTRYAG	2 cut(s)	530, 693
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	619, 679
BstV2I	GAAGAC	1 cut(s)	830
BstX2I	RGATCY	2 cut(s)	607, 730
BstYI	RGATCY	2 cut(s)	607, 730
BsuI	GTATCC	1 cut(s)	976
BtsCI	GGATG	2 cut(s)	91, 742
BtsI	GCAGTG	1 cut(s)	1020
BtsIMutI	CAGTG	3 cut(s)	759, 779, 1020
Cac8I	GCNNGC	2 cut(s)	265, 577
CfoI	GCGC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	494, 911
CviAII	CATG	2 cut(s)	545, 931
CviQI	GTAC	2 cut(s)	494, 911
DdeI	CTNAG	5 cut(s)	153, 268, 363, 417, 725
DpnI	GATC	4 cut(s)	13, 123, 609, 732
DpnII	GATC	4 cut(s)	11, 121, 607, 730
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco32I	GATATC	1 cut(s)	905
Eco57I	CTGAAG	2 cut(s)	126, 188
EcoRII	CCWGG	2 cut(s)	867, 1025
EcoRV	GATATC	1 cut(s)	905
FaeI	CATG	2 cut(s)	548, 934
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	2 cut(s)	544, 930
FauNDI	CATATG	1 cut(s)	984
Fnu4HI	GCNGC	2 cut(s)	633, 693
FokI	GGATG	2 cut(s)	98, 729
Fsp4HI	GCNGC	2 cut(s)	633, 693
FspBI	CTAG	4 cut(s)	179, 380, 657, 914
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	2 cut(s)	633, 693
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	548, 934
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	3 cut(s)	25, 569, 645
HphI	GGTGA	3 cut(s)	320, 397, 848
Hpy188I	TCNGA	3 cut(s)	16, 106, 156
Hpy188III	TCNNGA	2 cut(s)	611, 657
Hpy99I	CGWCG	1 cut(s)	952
HpyAV	CCTTC	4 cut(s)	274, 442, 559, 937
HpyCH4IV	ACGT	1 cut(s)	950
HpyCH4V	TGCA	6 cut(s)	184, 238, 244, 548, 635, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 545, 953
HpyF3I	CTNAG	5 cut(s)	153, 268, 363, 417, 725
HpySE526I	ACGT	1 cut(s)	950
Hsp92II	CATG	2 cut(s)	548, 934
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	4 cut(s)	11, 121, 607, 730
LmnI	GCTCC	1 cut(s)	715
Lsp1109I	GCAGC	2 cut(s)	619, 679
LweI	GCATC	3 cut(s)	225, 667, 751
MaeI	CTAG	4 cut(s)	179, 380, 657, 914
MaeII	ACGT	1 cut(s)	950
MaeIII	GTNAC	2 cut(s)	53, 358
MalI	GATC	4 cut(s)	13, 123, 609, 732
MboI	GATC	4 cut(s)	11, 121, 607, 730
MboII	GAAGA	9 cut(s)	29, 169, 181, 211, 323, 470, 607, 809, 835
MflI	RGATCY	2 cut(s)	607, 730
MmeI	TCCRAC	3 cut(s)	348, 390, 1040
MnlI	CCTC	8 cut(s)	142, 376, 463, 499, 529, 808, 835, 952
MseI	TTAA	3 cut(s)	126, 443, 486
MspCI	CTTAAG	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	869, 1027
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	2 cut(s)	869, 1027
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	3 cut(s)	49, 545, 953
NdeI	CATATG	1 cut(s)	984
NdeII	GATC	4 cut(s)	11, 121, 607, 730
NlaIII	CATG	2 cut(s)	548, 934
NmuCI	GTSAC	1 cut(s)	53
PctI	GAATGC	1 cut(s)	526
PfeI	GAWTC	3 cut(s)	25, 569, 645
PflMI	CCANNNNNTGG	1 cut(s)	1026
PkrI	GCNGC	2 cut(s)	634, 694
Psp6I	CCWGG	2 cut(s)	867, 1025
PspGI	CCWGG	2 cut(s)	867, 1025
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	2 cut(s)	607, 730
RsaI	GTAC	2 cut(s)	495, 912
RsaNI	GTAC	2 cut(s)	494, 911
SaqAI	TTAA	3 cut(s)	126, 443, 486
SatI	GCNGC	2 cut(s)	633, 693
Sau3AI	GATC	4 cut(s)	11, 121, 607, 730
ScaI	AGTACT	2 cut(s)	495, 912
ScrFI	CCNGG	2 cut(s)	869, 1027
SfaNI	GCATC	3 cut(s)	225, 667, 751
SfcI	CTRYAG	2 cut(s)	530, 693
SmlI	CTYRAG	4 cut(s)	62, 125, 209, 611
SmoI	CTYRAG	4 cut(s)	62, 125, 209, 611
SsiI	CCGC	1 cut(s)	1000
SspMI	CTAG	4 cut(s)	179, 380, 657, 914
StyD4I	CCNGG	2 cut(s)	867, 1025
TaiI	ACGT	1 cut(s)	953
TaqI	TCGA	1 cut(s)	504
TatI	WGTACW	2 cut(s)	493, 910
TfiI	GAWTC	3 cut(s)	25, 569, 645
Tru1I	TTAA	3 cut(s)	126, 443, 486
Tru9I	TTAA	3 cut(s)	126, 443, 486
TscAI	CASTG	3 cut(s)	766, 786, 1027
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	2 cut(s)	632, 692
Tsp45I	GTSAC	1 cut(s)	53
TspRI	CASTG	3 cut(s)	766, 786, 1027
Van91I	CCANNNNNTGG	1 cut(s)	1026
Vha464I	CTTAAG	1 cut(s)	125
XapI	RAATTY	2 cut(s)	830, 925
XbaI	TCTAGA	1 cut(s)	656
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1023
XspI	CTAG	4 cut(s)	179, 380, 657, 914
ZrmI	AGTACT	2 cut(s)	495, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.