RchiOBHm_Chr5g0044871

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000340
Physical Location & Seq
Forward (+)
40338142 .. 40341445
3304 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32301

Sequence Viewer

Length: 315 bp
ATGTGGGAGGATTATGTTGGGGATTCTAATTGGAACCCATACAAGGTTATTATGGATGAGACAGGAAAAAGAATGGAAATTATTGATGAAGAAGATAAAAAGTTGAAAAATTTGAAGACTGAGCTGGGGGATGAAGTATACAAGGTGGTGATAACATCTTTAATGGAATTGAATGAACATAATTCCAGTGGGAGGTATAAGATACAAGAGCTTTGGAATTTTAAAGCAGGGAGGAAGGCAACACTTAAAGAGGGAGTTGCTTACATTCTGAAGCAATGGAACGCGCTTAAGAACATGAAGCGGCAAAGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

12.39

Weight (kDa)

8.75

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 1 - 98 8.3e-40 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 138
AccII CGCG 1 cut(s) 284
AciI CCGC 1 cut(s) 301
AcsI RAATTY 2 cut(s) 109, 217
AcuI CTGAAG 1 cut(s) 290
AfiI CCNNNNNNNGG 2 cut(s) 43, 192
AflII CTTAAG 1 cut(s) 287
AgsI TTSAA 3 cut(s) 106, 115, 172
AluBI AGCT 2 cut(s) 124, 211
AluI AGCT 2 cut(s) 124, 211
Alw26I GTCTC 1 cut(s) 53
ApoI RAATTY 2 cut(s) 109, 217
AspLEI GCGC 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 313
BfrI CTTAAG 1 cut(s) 287
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
BmiI GGNNCC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 122
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 192
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 281
BseGI GGATG 2 cut(s) 61, 136
BseLI CCNNNNNNNGG 2 cut(s) 43, 192
BseMI GCAATG 1 cut(s) 281
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 186
BseYI CCCAGC 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 43, 192
BsmAI GTCTC 1 cut(s) 53
BspACI CCGC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 112
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 35
BspTI CTTAAG 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 281
BsrI ACTGG 1 cut(s) 186
BssNAI GTATAC 1 cut(s) 139
Bst1107I GTATAC 1 cut(s) 139
BstAFI CTTAAG 1 cut(s) 287
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 2 cut(s) 61, 136
BstFNI CGCG 1 cut(s) 284
BstHHI GCGC 1 cut(s) 286
BstMAI GTCTC 1 cut(s) 53
BstUI CGCG 1 cut(s) 284
BstV2I GAAGAC 1 cut(s) 122
BstZ17I GTATAC 1 cut(s) 139
BtsCI GGATG 2 cut(s) 61, 136
BtsIMutI CAGTG 1 cut(s) 193
CfoI GCGC 1 cut(s) 286
CviAII CATG 1 cut(s) 295
CviJI RGCY 2 cut(s) 124, 211
CviKI_1 RGCY 2 cut(s) 124, 211
DdeI CTNAG 1 cut(s) 120
DraI TTTAAA 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 290
FaeI CATG 1 cut(s) 298
FaiI YATR 7 cut(s) 15, 40, 53, 139, 180, 198, 296
FatI CATG 1 cut(s) 294
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 302
FokI GGATG 2 cut(s) 68, 143
Fsp4HI GCNGC 1 cut(s) 302
FspBI CTAG 1 cut(s) 313
GlaI GCGC 1 cut(s) 285
GluI GCNGC 1 cut(s) 302
GsaI CCCAGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 286
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HinfI GANTC 1 cut(s) 23
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 270
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 229
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 1 cut(s) 284
LpnPI CCDG 4 cut(s) 48, 110, 199, 213
MaeI CTAG 1 cut(s) 313
MboII GAAGA 3 cut(s) 101, 104, 127
MluCI AATT 6 cut(s) 28, 78, 109, 167, 181, 217
MnlI CCTC 3 cut(s) 186, 225, 244
MseI TTAA 4 cut(s) 161, 222, 246, 288
MspCI CTTAAG 1 cut(s) 287
MvnI CGCG 1 cut(s) 284
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 303
PspFI CCCAGC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 35
SaqAI TTAA 4 cut(s) 161, 222, 246, 288
SatI GCNGC 1 cut(s) 302
SetI ASST 5 cut(s) 48, 126, 147, 197, 213
SgeI CNNG 9 cut(s) 55, 75, 137, 154, 198, 218, 240, 295, 307
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 6 cut(s) 28, 78, 109, 167, 181, 217
SsiI CCGC 1 cut(s) 301
SspMI CTAG 1 cut(s) 313
TasI AATT 6 cut(s) 28, 78, 109, 167, 181, 217
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 4 cut(s) 161, 222, 246, 288
Tru9I TTAA 4 cut(s) 161, 222, 246, 288
TscAI CASTG 1 cut(s) 193
TspDTI ATGAA 4 cut(s) 102, 147, 189, 311
TspRI CASTG 1 cut(s) 193
Vha464I CTTAAG 1 cut(s) 287
XapI RAATTY 2 cut(s) 109, 217
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.