Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000340

Physical Location & Seq

Genomic Coordinates Forward (+)

20019485 .. 20021444

Gene Structure 1960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00016050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAATTGACTCAAATAATTTCCCTTCAGGGATTGAAGGAATCAGCAAGCAACACTATTGGTGTGAAGATAATGGGAGACCTTGAGAAACAGCCTTTGGAAGTTATTGATGAAGATGATGAAAAATTGGAGGCCTTGAAGACAGAATTTGGTGATGAAGTTTTTGAAGCTGTGAAAACTGTCCTGGCTGAATTGAACGAGAATAATCCAACAGGCAGATATCCAGTACTAGAGCTTTGGAATTTCAGGGAAAACAGGAAGGCGACGTTAGCAGAGGATGTATCCCATCTACTGAACCAGATGAAACCTAATAAGCGGAGAAATGTTCGTCCAACCTCTGGTTGGAAGCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

118

Amino Acids

13.45

Weight (kDa)

4.98

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	27 - 107	3e-29	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica	Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis	pycom01g15630
rosa_chinensis	RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata	RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora	Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii	Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa	Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha	Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana	Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	338
AciI	CCGC	1 cut(s)	316
AcsI	RAATTY	2 cut(s)	146, 241
AcuI	CTGAAG	1 cut(s)	11
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	338, 342
AgsI	TTSAA	4 cut(s)	37, 139, 167, 196
AjnI	CCWGG	1 cut(s)	183
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	2 cut(s)	170, 235
AluI	AGCT	2 cut(s)	170, 235
Alw26I	GTCTC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	132
ApoI	RAATTY	2 cut(s)	146, 241
AsuHPI	GGTGA	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	146
BccI	CCATC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	185
BciVI	GTATCC	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	230
BfuI	GTATCC	1 cut(s)	292
BmcAI	AGTACT	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 342
Bse1I	ACTGG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	338, 342
BseNI	ACTGG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	338, 342
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	134
Bso31I	GGTCTC	1 cut(s)	72
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	283
BstMAI	GTCTC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	183
BstV2I	GAAGAC	1 cut(s)	146
BsuI	GTATCC	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	227
CviJI	RGCY	6 cut(s)	94, 134, 170, 188, 235, 349
CviKI_1	RGCY	6 cut(s)	94, 134, 170, 188, 235, 349
CviQI	GTAC	1 cut(s)	227
Eco147I	AGGCCT	1 cut(s)	134
Eco31I	GGTCTC	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	183
EcoRV	GATATC	1 cut(s)	221
FokI	GGATG	1 cut(s)	290
FspBI	CTAG	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	134
HinfI	GANTC	2 cut(s)	10, 41
HphI	GGTGA	1 cut(s)	164
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	3 cut(s)	31, 35, 253
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpySE526I	ACGT	1 cut(s)	266
LpnPI	CCDG	9 cut(s)	14, 170, 197, 198, 232, 237, 241, 311, 324
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	266
MboII	GAAGA	3 cut(s)	79, 125, 151
MluCI	AATT	6 cut(s)	5, 18, 125, 146, 191, 241
MlyI	GAGTC	1 cut(s)	4
MmeI	TCCRAC	3 cut(s)	233, 323, 356
MnlI	CCTC	3 cut(s)	124, 268, 346
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	269
PceI	AGGCCT	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	338
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
ScaI	AGTACT	1 cut(s)	228
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	185
SetI	ASST	6 cut(s)	84, 172, 237, 269, 310, 338
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	6 cut(s)	5, 18, 125, 146, 191, 241
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	1 cut(s)	316
SspMI	CTAG	1 cut(s)	230
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	269
TasI	AATT	6 cut(s)	5, 18, 125, 146, 191, 241
TatI	WGTACW	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	41
TspDTI	ATGAA	4 cut(s)	126, 135, 171, 317
Van91I	CCANNNNNTGG	1 cut(s)	338
XapI	RAATTY	2 cut(s)	146, 241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339
XspI	CTAG	1 cut(s)	230
ZrmI	AGTACT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.