Rw5G040030

XH XS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000340
Physical Location & Seq
Forward (+)
70739797 .. 70742336
2540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G040030.1

Sequence Viewer

Length: 510 bp
ATGGATGAAATTCGAGAAAAGTTAAAGGAGAAAGAAGAAGAGCTGGCCAATGTTGAAGCTCTAAACAACACACTTATTGTTAAGGAGCTTAAAAGCAACACTGAACTGCAGGAGGCTCGTAGAGAGATAATCAGAGTACCAAGTCGTGCTTTTATTGGTGTCAAGAGAATGGGAGAGCTTGACAGCAAACCATTTCAGACTGCATGCAAGAGAAAATATAATACAGAAGAAGCAGATGACCAGGCAGCAGCACTATGTTCTCTATGGGAGAATTATATTAAGGATTCAAGCTGGCATCCATTCAAAACTAGCAAGGATTCCTTTGGACATTGTAAGGAGATTATTGATGAAGAAGATGAAAAATTGAAGAAGTTAAAGAACGAGTTTGGTGCTGAAGTTCATCTGGTTGTGTCAACTGCTTTGCTGGAATTGAATGAGTATAATCCCAGTGTTGAAACTGCAAAAGAGGAGAAGAACCTCATAAAGAGTAGGGGATTGTCTCGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XH XS zf-XS

Protein Analysis

169

Amino Acids

19.51

Weight (kDa)

5.35

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 55 - 153 1.6e-38 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 1 cut(s) 138
AgsI TTSAA 6 cut(s) 56, 288, 304, 367, 433, 455
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 5 cut(s) 43, 59, 88, 178, 291
AluI AGCT 5 cut(s) 43, 59, 88, 178, 291
Alw26I GTCTC 1 cut(s) 504
Ama87I CYCGRG 1 cut(s) 501
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 245, 248
ApoI RAATTY 1 cut(s) 9
AvaI CYCGRG 1 cut(s) 501
BalI TGGCCA 1 cut(s) 47
BbvI GCAGC 2 cut(s) 257, 260
BcgI CGANNNNNNTGC 4 cut(s) 98, 132, 371, 405
BciT130I CCWGG 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 504
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 107
BisI GCNGC 2 cut(s) 246, 249
BlsI GCNGC 2 cut(s) 247, 250
Bme1390I CCNGG 1 cut(s) 242
BmeT110I CYCGRG 1 cut(s) 501
BmrFI CCNGG 1 cut(s) 242
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 1 cut(s) 304
BmuI ACTGGG 1 cut(s) 441
Bse1I ACTGG 1 cut(s) 447
BseBI CCWGG 1 cut(s) 242
BseGI GGATG 2 cut(s) 10, 295
BseNI ACTGG 1 cut(s) 447
BseRI GAGGAG 1 cut(s) 482
BseXI GCAGC 2 cut(s) 257, 260
BshFI GGCC 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 501
BsmAI GTCTC 1 cut(s) 504
BsnI GGCC 1 cut(s) 47
BsoBI CYCGRG 1 cut(s) 501
BspANI GGCC 1 cut(s) 47
BspMAI CTGCAG 1 cut(s) 111
BspQI GCTCTTC 1 cut(s) 33
BsrI ACTGG 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 3 cut(s) 45, 205, 293
BstF5I GGATG 2 cut(s) 10, 295
BstMAI GTCTC 1 cut(s) 504
BstNI CCWGG 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 240
BstSFI CTRYAG 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 257, 260
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 2 cut(s) 10, 295
BtsIMutI CAGTG 2 cut(s) 99, 454
Cac8I GCNNGC 3 cut(s) 45, 205, 293
Csp6I GTAC 1 cut(s) 137
CviAII CATG 1 cut(s) 204
CviJI RGCY 7 cut(s) 43, 47, 59, 88, 116, 178, 291
CviKI_1 RGCY 7 cut(s) 43, 47, 59, 88, 116, 178, 291
CviQI GTAC 1 cut(s) 137
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 501
EcoRII CCWGG 1 cut(s) 240
FaeI CATG 1 cut(s) 207
FaiI YATR 7 cut(s) 205, 219, 256, 265, 276, 441, 482
FalI AAGNNNNNCTT 4 cut(s) 133, 165, 305, 337
FatI CATG 1 cut(s) 203
Fnu4HI GCNGC 2 cut(s) 246, 249
FokI GGATG 2 cut(s) 17, 282
Fsp4HI GCNGC 2 cut(s) 246, 249
FspBI CTAG 1 cut(s) 309
GluI GCNGC 2 cut(s) 246, 249
HaeIII GGCC 1 cut(s) 47
Hin1II CATG 1 cut(s) 207
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HinfI GANTC 2 cut(s) 284, 317
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 2 cut(s) 134, 198
Hpy188III TCNNGA 4 cut(s) 14, 163, 501, 503
Hpy8I GTNNAC 1 cut(s) 414
HpyCH4V TGCA 4 cut(s) 109, 203, 207, 461
Hsp92II CATG 1 cut(s) 207
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 8 cut(s) 29, 95, 227, 254, 277, 389, 410, 460
Lsp1109I GCAGC 2 cut(s) 257, 260
LweI GCATC 1 cut(s) 304
MaeI CTAG 1 cut(s) 309
MboII GAAGA 7 cut(s) 47, 50, 239, 362, 365, 379, 484
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 4 cut(s) 9, 271, 362, 428
MluNI TGGCCA 1 cut(s) 47
MnlI CCTC 3 cut(s) 106, 460, 488
Mox20I TGGCCA 1 cut(s) 47
MscI TGGCCA 1 cut(s) 47
MseI TTAA 5 cut(s) 23, 81, 90, 279, 374
Msp20I TGGCCA 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 242
NlaIII CATG 1 cut(s) 207
NspI RCATGY 1 cut(s) 207
PaeI GCATGC 1 cut(s) 207
PaeR7I CTCGAG 1 cut(s) 501
PciSI GCTCTTC 1 cut(s) 33
PfeI GAWTC 2 cut(s) 284, 317
PkrI GCNGC 2 cut(s) 247, 250
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PstI CTGCAG 1 cut(s) 111
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 5 cut(s) 23, 81, 90, 279, 374
SatI GCNGC 2 cut(s) 246, 249
ScrFI CCNGG 1 cut(s) 242
SetI ASST 6 cut(s) 45, 61, 90, 180, 293, 480
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 107
Sfr274I CTCGAG 1 cut(s) 501
SlaI CTCGAG 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 501
SmoI CTYRAG 1 cut(s) 501
SphI GCATGC 1 cut(s) 207
Sse9I AATT 4 cut(s) 9, 271, 362, 428
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 240
TaqI TCGA 2 cut(s) 13, 502
TasI AATT 4 cut(s) 9, 271, 362, 428
TfiI GAWTC 2 cut(s) 284, 317
Tru1I TTAA 5 cut(s) 23, 81, 90, 279, 374
Tru9I TTAA 5 cut(s) 23, 81, 90, 279, 374
TscAI CASTG 2 cut(s) 106, 454
TseI GCWGC 2 cut(s) 245, 248
TspDTI ATGAA 4 cut(s) 21, 363, 372, 389
TspRI CASTG 2 cut(s) 106, 454
XapI RAATTY 1 cut(s) 9
XceI RCATGY 1 cut(s) 207
XhoI CTCGAG 1 cut(s) 501
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.