Rmu_sc0004730.1_g000006

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004730.1
OG0000340
Physical Location & Seq
Reverse (-)
41621 .. 43040
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004730.1_g000006.1.cds

Sequence Viewer

Length: 702 bp
ctggcagaaaagagaaagagagaaaatgagaaacttcactcagaaataattgaattgaaagaccagctccaagccaaacaggcagtgaatgaggattttgaagcccagaagaagattaaagcacttgaacaaacgttaaaggagaaggcgcaggagcttactgatctgtcagaattttacaatccactgattttcaaggagaggagcaataatgatgagctgcagggggcccgtaaagagttaattgatggactgaaaaatcattcaaaaatctatattggcgtgaagacattgggtgatcttgacttgaaggcatttcaaattgcagccaagagaagatatactgcattagaagaagcaaatgagagggcagtggagttgtgctctatgtgggaggattatgttggggattctaaatggaacccatacaaggttattatggatgagacaggaaaaagaacggaaattattgatgaagaagataaaaagttgaaaaatttgaagactgagctgggtgatgaagtatacaaggtggtgacaacttcattaatggaattgaatgaacataattccagtgggaggtataagatacaagagctttggaattttaaagcagggaggaaggcaacacttaaagagggagttgcttacattctgaagcaatggaacacgcttaagaacaccaagcggcgaagaaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

27.28

Weight (kDa)

8.66

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 525
AciI CCGC 1 cut(s) 688
AclI AACGTT 1 cut(s) 134
AcsI RAATTY 3 cut(s) 173, 496, 604
AcuI CTGAAG 1 cut(s) 677
AfiI CCNNNNNNNGG 2 cut(s) 430, 579
AflII CTTAAG 1 cut(s) 674
AluBI AGCT 5 cut(s) 67, 157, 220, 511, 598
AluI AGCT 5 cut(s) 67, 157, 220, 511, 598
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 440
AoxI GGCC 1 cut(s) 228
ApaI GGGCCC 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 220, 326
ApoI RAATTY 3 cut(s) 173, 496, 604
AseI ATTAAT 1 cut(s) 548
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 228, 229
AsuHPI GGTGA 3 cut(s) 308, 527, 547
BaeGI GKGCMC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 232
BbsI GAAGAC 2 cut(s) 293, 509
Bbv12I GWGCWC 1 cut(s) 386
BbvI GCAGC 2 cut(s) 207, 338
BccI CCATC 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 440
BfaI CTAG 1 cut(s) 700
BfmI CTRYAG 1 cut(s) 221
BfrI CTTAAG 1 cut(s) 674
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 3 cut(s) 221, 327, 689
BlsI GCNGC 3 cut(s) 222, 328, 690
BmgT120I GGNCC 2 cut(s) 228, 229
BmiI GGNNCC 3 cut(s) 229, 230, 422
BpiI GAAGAC 2 cut(s) 293, 509
BplI GAGNNNNNCTC 2 cut(s) 368, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 430, 579
Bse1I ACTGG 1 cut(s) 573
Bse3DI GCAATG 1 cut(s) 668
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 2 cut(s) 430, 579
BseMI GCAATG 1 cut(s) 668
BseMII CTCAG 2 cut(s) 54, 498
BseNI ACTGG 1 cut(s) 573
BseRI GAGGAG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 2 cut(s) 207, 338
BseYI CCCAGC 1 cut(s) 511
BshFI GGCC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 386
BslI CCNNNNNNNGG 2 cut(s) 430, 579
BsmAI GTCTC 1 cut(s) 440
BsnI GGCC 1 cut(s) 230
Bsp120I GGGCCC 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 232, 386
Bsp143I GATC 2 cut(s) 163, 298
BspACI CCGC 1 cut(s) 688
BspANI GGCC 1 cut(s) 230
BspCNI CTCAG 2 cut(s) 53, 499
BspLI GGNNCC 3 cut(s) 229, 230, 422
BspMAI CTGCAG 1 cut(s) 225
BspTI CTTAAG 1 cut(s) 674
BsrDI GCAATG 1 cut(s) 668
BsrI ACTGG 1 cut(s) 573
BssMI GATC 2 cut(s) 163, 298
BssNAI GTATAC 1 cut(s) 526
Bst1107I GTATAC 1 cut(s) 526
BstAFI CTTAAG 1 cut(s) 674
BstDEI CTNAG 2 cut(s) 40, 507
BstF5I GGATG 1 cut(s) 448
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 2 cut(s) 166, 301
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 2 cut(s) 163, 298
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 232
BstV1I GCAGC 2 cut(s) 207, 338
BstV2I GAAGAC 2 cut(s) 293, 509
BstZ17I GTATAC 1 cut(s) 526
BsuRI GGCC 1 cut(s) 230
BtsCI GGATG 1 cut(s) 448
BtsI GCAGTG 2 cut(s) 90, 378
BtsIMutI CAGTG 4 cut(s) 90, 185, 378, 580
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 228, 229
CviJI RGCY 9 cut(s) 67, 74, 104, 157, 220, 230, 329, 511, 598
CviKI_1 RGCY 9 cut(s) 67, 74, 104, 157, 220, 230, 329, 511, 598
DdeI CTNAG 2 cut(s) 40, 507
DpnI GATC 2 cut(s) 165, 300
DpnII GATC 2 cut(s) 163, 298
DraI TTTAAA 1 cut(s) 610
Eco24I GRGCYC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 677
EcoO109I RGGNCCY 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 232
FaiI YATR 9 cut(s) 276, 342, 389, 402, 427, 440, 526, 567, 585
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 3 cut(s) 221, 327, 689
FokI GGATG 1 cut(s) 455
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 3 cut(s) 221, 327, 689
FspBI CTAG 1 cut(s) 700
GlaI GCGC 1 cut(s) 150
GluI GCNGC 3 cut(s) 221, 327, 689
GsaI CCCAGC 1 cut(s) 515
HaeIII GGCC 1 cut(s) 230
HhaI GCGC 1 cut(s) 151
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 1 cut(s) 410
HphI GGTGA 3 cut(s) 308, 527, 547
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 3 cut(s) 43, 172, 657
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 1 cut(s) 526
HpyAV CCTTC 3 cut(s) 139, 304, 616
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 223, 326, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 2 cut(s) 40, 507
HpySE526I ACGT 1 cut(s) 134
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 2 cut(s) 163, 298
LmnI GCTCC 3 cut(s) 72, 154, 204
LpnPI CCDG 9 cut(s) 65, 77, 119, 137, 209, 435, 497, 586, 600
Lsp1109I GCAGC 2 cut(s) 207, 338
MaeI CTAG 1 cut(s) 700
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 535
MalI GATC 2 cut(s) 165, 300
MboI GATC 2 cut(s) 163, 298
MboII GAAGA 8 cut(s) 121, 124, 298, 348, 365, 488, 491, 514
MhlI GDGCHC 2 cut(s) 232, 386
MnlI CCTC 7 cut(s) 85, 195, 360, 388, 573, 612, 631
MseI TTAA 7 cut(s) 117, 137, 242, 548, 609, 633, 675
MspCI CTTAAG 1 cut(s) 674
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 2 cut(s) 163, 298
NlaIV GGNNCC 3 cut(s) 229, 230, 422
NmuCI GTSAC 1 cut(s) 535
PfeI GAWTC 1 cut(s) 410
PkrI GCNGC 3 cut(s) 222, 328, 690
PshBI ATTAAT 1 cut(s) 548
Psp1406I AACGTT 1 cut(s) 134
PspFI CCCAGC 1 cut(s) 511
PspN4I GGNNCC 3 cut(s) 229, 230, 422
PspOMI GGGCCC 1 cut(s) 228
PspPI GGNCC 2 cut(s) 228, 229
PstI CTGCAG 1 cut(s) 225
SaqAI TTAA 7 cut(s) 117, 137, 242, 548, 609, 633, 675
SatI GCNGC 3 cut(s) 221, 327, 689
Sau3AI GATC 2 cut(s) 163, 298
Sau96I GGNCC 2 cut(s) 228, 229
SduI GDGCHC 2 cut(s) 232, 386
SetI ASST 9 cut(s) 69, 137, 159, 222, 435, 513, 534, 584, 600
SfcI CTRYAG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
SsiI CCGC 1 cut(s) 688
SspMI CTAG 1 cut(s) 700
TaiI ACGT 1 cut(s) 137
TauI GCSGC 1 cut(s) 691
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 7 cut(s) 117, 137, 242, 548, 609, 633, 675
Tru9I TTAA 7 cut(s) 117, 137, 242, 548, 609, 633, 675
TscAI CASTG 4 cut(s) 90, 192, 378, 580
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 2 cut(s) 220, 326
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 4 cut(s) 489, 534, 534, 576
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 4 cut(s) 90, 192, 378, 580
Vha464I CTTAAG 1 cut(s) 674
VspI ATTAAT 1 cut(s) 548
XapI RAATTY 3 cut(s) 173, 496, 604
XmiI GTMKAC 1 cut(s) 525
XspI CTAG 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.