Rmu_sc0015213.1_g000016

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015213.1
OG0000340
Physical Location & Seq
Reverse (-)
42658 .. 47976
5319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015213.1_g000016.1.cds

Sequence Viewer

Length: 879 bp
atgcttacctctaagaaagaagccgagtgctgtgctgatgggttggccttggattactttgatgaaaacccacaaccaccccagcctaaacgcaccaagtgtttctcttccccggctcagccgtctcatatagcctcacttcctccaccttcatcaccaggtaacaaggttttagaggctctaggttcgctgtatctcacatacaaggagaaagagatatggaatgagacaactagcacagagggaaagaaggacacttatgaactggagctaatgttggcagaagagagaaagctatggcagagagaaaagcaccagcttcaactaaaggacattgaattggagaatcagattgatatgaaaaagaatgagctggagcactgccgcaaggagctacagcatatgagagaaaatgagaagcttcactcagaaataattgaattgaaagaccagctccaaaccaaacaagcagtgaatgaggattttgaggcccagatgaatattaaagcacttgaacaaatgttaaaggagaaggagcatgagcttactgatctgtcagaattttacaatgcactaattttcaaggagagaagcaacaatgatgagctgcagggggcccgtaaagagttaattgatgttgtaccgctggaggtctcgaaggcctccattgacaatcagaacttccgagctcttcacaccaaaggcagtggagtagacgcagtaggcgtgctccttaaaggtgcgaatggaggcggggcggtcgacggtccagagcttcacggtgtcgtcccacgaggcggtgaacaacgagtcatggcgtgtggggttgtagtcggtggagctgacctcacgtgtgtgctcatggagggagcggaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

32.71

Weight (kDa)

5.06

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 872
AccI GTMKAC 2 cut(s) 714, 762
AciI CCGC 6 cut(s) 385, 644, 753, 758, 798, 872
AcsI RAATTY 1 cut(s) 560
AcvI CACGTG 1 cut(s) 852
AdeI CACNNNGTG 1 cut(s) 99
AfaI GTAC 1 cut(s) 642
AfiI CCNNNNNNNGG 1 cut(s) 797
AflIII ACRYGT 1 cut(s) 851
AgsI TTSAA 6 cut(s) 323, 338, 440, 445, 515, 583
AjnI CCWGG 1 cut(s) 157
AleI CACNNNNGTG 1 cut(s) 854
Alw21I GWGCWC 4 cut(s) 381, 691, 732, 861
Alw26I GTCTC 3 cut(s) 129, 221, 658
AoxI GGCC 4 cut(s) 45, 489, 615, 660
ApaI GGGCCC 1 cut(s) 619
ApeKI GCWGC 1 cut(s) 607
ApoI RAATTY 1 cut(s) 560
AspS9I GGNCC 4 cut(s) 490, 615, 616, 767
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 147, 812
AvaII GGWCC 1 cut(s) 767
BaeGI GKGCMC 1 cut(s) 619
BanII GRGCYC 2 cut(s) 619, 691
BauI CACGAG 1 cut(s) 792
BbrPI CACGTG 1 cut(s) 852
Bbv12I GWGCWC 4 cut(s) 381, 691, 732, 861
BbvI GCAGC 1 cut(s) 594
BccI CCATC 1 cut(s) 32
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciT130I CCWGG 1 cut(s) 159
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 3 cut(s) 129, 221, 658
BfaI CTAG 2 cut(s) 182, 234
BfmI CTRYAG 2 cut(s) 395, 608
BisI GCNGC 2 cut(s) 385, 608
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 2 cut(s) 386, 609
Bme1390I CCNGG 2 cut(s) 113, 159
Bme18I GGWCC 1 cut(s) 767
BmgT120I GGNCC 4 cut(s) 490, 615, 616, 767
BmiI GGNNCC 2 cut(s) 616, 617
BmrFI CCNGG 2 cut(s) 113, 159
BplI GAGNNNNNCTC 2 cut(s) 831, 863
BpmI CTGGAG 3 cut(s) 287, 395, 668
Bpu1102I GCTNAGC 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 852
BsaI GGTCTC 1 cut(s) 658
BsaJI CCNNGG 2 cut(s) 48, 111
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 797
Bse1I ACTGG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 48, 111
BseLI CCNNNNNNNGG 1 cut(s) 797
BseMII CTCAG 2 cut(s) 131, 441
BseNI ACTGG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 619
BseXI GCAGC 1 cut(s) 594
BseYI CCCAGC 1 cut(s) 81
Bsh1285I CGRYCG 1 cut(s) 762
BshFI GGCC 4 cut(s) 47, 491, 617, 662
BsiEI CGRYCG 1 cut(s) 762
BsiHKAI GWGCWC 4 cut(s) 381, 691, 732, 861
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 773
BslI CCNNNNNNNGG 1 cut(s) 797
BsmAI GTCTC 3 cut(s) 129, 221, 658
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 773
BsnI GGCC 4 cut(s) 47, 491, 617, 662
Bso31I GGTCTC 1 cut(s) 658
Bsp120I GGGCCC 1 cut(s) 615
Bsp1286I GDGCHC 5 cut(s) 381, 619, 691, 732, 861
Bsp143I GATC 1 cut(s) 550
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 6 cut(s) 385, 644, 753, 758, 798, 872
BspANI GGCC 4 cut(s) 47, 491, 617, 662
BspCNI CTCAG 2 cut(s) 130, 440
BspLI GGNNCC 2 cut(s) 616, 617
BspMAI CTGCAG 1 cut(s) 612
BspQI GCTCTTC 1 cut(s) 696
BspTNI GGTCTC 1 cut(s) 658
BsrBI CCGCTC 1 cut(s) 872
BsrI ACTGG 1 cut(s) 270
BssECI CCNNGG 2 cut(s) 48, 111
BssMI GATC 1 cut(s) 550
BssSI CACGAG 1 cut(s) 792
BssT1I CCWWGG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 792
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 767, 782
Bst6I CTCTTC 3 cut(s) 112, 279, 696
BstBAI YACGTR 1 cut(s) 852
BstC8I GCNNGC 1 cut(s) 728
BstDEI CTNAG 3 cut(s) 12, 117, 427
BstKTI GATC 1 cut(s) 553
BstMAI GTCTC 3 cut(s) 129, 221, 658
BstMBI GATC 1 cut(s) 550
BstMCI CGRYCG 1 cut(s) 762
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 2 cut(s) 111, 157
BstSFI CTRYAG 2 cut(s) 395, 608
BstSLI GKGCMC 1 cut(s) 619
BstV1I GCAGC 1 cut(s) 594
BsuRI GGCC 4 cut(s) 47, 491, 617, 662
BtsI GCAGTG 3 cut(s) 379, 477, 712
BtsIMutI CAGTG 3 cut(s) 379, 477, 712
Cac8I GCNNGC 1 cut(s) 728
Cfr13I GGNCC 4 cut(s) 490, 615, 616, 767
CseI GACGC 1 cut(s) 725
CsiI ACCWGGT 1 cut(s) 157
Csp6I GTAC 1 cut(s) 641
CspCI CAANNNNNGTGG 2 cut(s) 688, 723
CviAII CATG 3 cut(s) 539, 814, 862
CviQI GTAC 1 cut(s) 641
DdeI CTNAG 3 cut(s) 12, 117, 427
DpnI GATC 1 cut(s) 552
DpnII GATC 1 cut(s) 550
DraIII CACNNNGTG 1 cut(s) 99
Eam1104I CTCTTC 3 cut(s) 112, 279, 696
EarI CTCTTC 3 cut(s) 112, 279, 696
Ecl136II GAGCTC 1 cut(s) 689
Eco130I CCWWGG 1 cut(s) 48
Eco147I AGGCCT 1 cut(s) 662
Eco24I GRGCYC 2 cut(s) 619, 691
Eco31I GGTCTC 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 767
Eco53kI GAGCTC 1 cut(s) 689
Eco72I CACGTG 1 cut(s) 852
EcoICRI GAGCTC 1 cut(s) 689
EcoO109I RGGNCCY 1 cut(s) 615
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 2 cut(s) 619, 691
ErhI CCWWGG 1 cut(s) 48
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 3 cut(s) 542, 817, 865
FaqI GGGAC 1 cut(s) 773
FatI CATG 3 cut(s) 538, 813, 861
FauI CCCGC 1 cut(s) 746
FauNDI CATATG 1 cut(s) 402
FblI GTMKAC 2 cut(s) 714, 762
Fnu4HI GCNGC 2 cut(s) 385, 608
FriOI GRGCYC 2 cut(s) 619, 691
Fsp4HI GCNGC 2 cut(s) 385, 608
FspBI CTAG 2 cut(s) 182, 234
GluI GCNGC 2 cut(s) 385, 608
GsaI CCCAGC 1 cut(s) 85
GsuI CTGGAG 3 cut(s) 287, 395, 668
HaeIII GGCC 4 cut(s) 47, 491, 617, 662
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 725
Hin1II CATG 3 cut(s) 542, 817, 865
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HindIII AAGCTT 1 cut(s) 419
HinfI GANTC 2 cut(s) 346, 810
HpaII CCGG 1 cut(s) 113
HphI GGTGA 2 cut(s) 147, 812
Hpy166II GTNNAC 3 cut(s) 715, 763, 803
Hpy188I TCNGA 5 cut(s) 351, 430, 559, 678, 686
Hpy188III TCNNGA 2 cut(s) 655, 770
Hpy8I GTNNAC 3 cut(s) 715, 763, 803
Hpy99I CGWCG 1 cut(s) 767
HpyAV CCTTC 4 cut(s) 159, 244, 526, 652
HpyCH4III ACNGT 2 cut(s) 767, 782
HpyCH4IV ACGT 1 cut(s) 851
HpyCH4V TGCA 2 cut(s) 572, 610
HpyF3I CTNAG 3 cut(s) 12, 117, 427
HpySE526I ACGT 1 cut(s) 851
Hsp92II CATG 3 cut(s) 542, 817, 865
Kzo9I GATC 1 cut(s) 550
LguI GCTCTTC 1 cut(s) 696
LmnI GCTCC 8 cut(s) 268, 376, 391, 459, 535, 735, 839, 869
Lsp1109I GCAGC 1 cut(s) 594
MabI ACCWGGT 1 cut(s) 157
MaeI CTAG 2 cut(s) 182, 234
MaeII ACGT 1 cut(s) 851
MaeIII GTNAC 1 cut(s) 161
MalI GATC 1 cut(s) 552
MbiI CCGCTC 1 cut(s) 872
MboI GATC 1 cut(s) 550
MboII GAAGA 3 cut(s) 99, 296, 683
MhlI GDGCHC 5 cut(s) 381, 619, 691, 732, 861
MluCI AATT 6 cut(s) 338, 435, 440, 560, 576, 630
MlyI GAGTC 1 cut(s) 819
MseI TTAA 4 cut(s) 504, 524, 629, 735
MslI CAYNNNNRTG 1 cut(s) 854
MspA1I CMGCKG 1 cut(s) 646
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 2 cut(s) 113, 159
MvaI CCWGG 1 cut(s) 159
NciI CCSGG 1 cut(s) 113
NdeI CATATG 1 cut(s) 402
NdeII GATC 1 cut(s) 550
NlaIII CATG 3 cut(s) 542, 817, 865
NlaIV GGNNCC 2 cut(s) 616, 617
NmeAIII GCCGAG 1 cut(s) 49
OliI CACNNNNGTG 1 cut(s) 854
PceI AGGCCT 1 cut(s) 662
PciSI GCTCTTC 1 cut(s) 696
PcsI WCGNNNNNNNCGW 1 cut(s) 723
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 2 cut(s) 386, 609
PleI GAGTC 1 cut(s) 818
PmaCI CACGTG 1 cut(s) 852
PmlI CACGTG 1 cut(s) 852
PpsI GAGTC 1 cut(s) 818
Ppu21I YACGTR 1 cut(s) 852
Psp124BI GAGCTC 1 cut(s) 691
Psp6I CCWGG 1 cut(s) 157
PspCI CACGTG 1 cut(s) 852
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 2 cut(s) 616, 617
PspOMI GGGCCC 1 cut(s) 615
PspPI GGNCC 4 cut(s) 490, 615, 616, 767
PstI CTGCAG 1 cut(s) 612
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
RseI CAYNNNNRTG 1 cut(s) 854
SacI GAGCTC 1 cut(s) 691
SalI GTCGAC 1 cut(s) 761
SapI GCTCTTC 1 cut(s) 696
SaqAI TTAA 4 cut(s) 504, 524, 629, 735
SatI GCNGC 2 cut(s) 385, 608
Sau3AI GATC 1 cut(s) 550
Sau96I GGNCC 4 cut(s) 490, 615, 616, 767
SchI GAGTC 1 cut(s) 819
ScrFI CCNGG 2 cut(s) 113, 159
SduI GDGCHC 5 cut(s) 381, 619, 691, 732, 861
SexAI ACCWGGT 1 cut(s) 157
SfcI CTRYAG 2 cut(s) 395, 608
SinI GGWCC 1 cut(s) 767
SmiMI CAYNNNNRTG 1 cut(s) 854
Sse9I AATT 6 cut(s) 338, 435, 440, 560, 576, 630
SseBI AGGCCT 1 cut(s) 662
SsiI CCGC 6 cut(s) 385, 644, 753, 758, 798, 872
SspI AATATT 1 cut(s) 502
SspMI CTAG 2 cut(s) 182, 234
SstI GAGCTC 1 cut(s) 691
StuI AGGCCT 1 cut(s) 662
StyD4I CCNGG 2 cut(s) 111, 157
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 2 cut(s) 767, 782
TaiI ACGT 1 cut(s) 854
TaqI TCGA 2 cut(s) 656, 762
TasI AATT 6 cut(s) 338, 435, 440, 560, 576, 630
TauI GCSGC 1 cut(s) 387
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 4 cut(s) 504, 524, 629, 735
Tru9I TTAA 4 cut(s) 504, 524, 629, 735
TscAI CASTG 3 cut(s) 386, 477, 712
TseI GCWGC 1 cut(s) 607
TspDTI ATGAA 5 cut(s) 78, 141, 276, 374, 512
TspRI CASTG 3 cut(s) 386, 477, 712
VpaK11BI GGWCC 1 cut(s) 767
XapI RAATTY 1 cut(s) 560
XmiI GTMKAC 2 cut(s) 714, 762
XspI CTAG 2 cut(s) 182, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.