RchiOBHm_Chr5g0044991

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000340
Physical Location & Seq
Forward (+)
40511131 .. 40516635
5505 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32313

Sequence Viewer

Length: 402 bp
ATGAGCTACAGGGGGCCCGGACTAAAAAATCATTCACAAATATATATTGGCGTGAAGACATTGGGTGATCTTGACTTGAAGGCATTTCAAGTTGCAGCCAAGAGAAGATATACTGCATTAGAAGAAGCAAATGAGAGGGCAGTGGAGTTGTGCTCTATGTGGGAGGATTATGTTGGGGGTTCTAAATGGAACCCATACAAGGTTATTATGGATGAGACAGGAAAAAGAATGGTGGTGACCACTTCGTTAATGGAATTGAATGATCATAATTCCAGTGGGAGGTATAAGATACAAGAGCTTTGGAATTTTAAAGCAGGGAGGAAGGCAACACTTAAAGAGGGAGTTGCTTACATTCTAAAGCAATGGACCGTGCTTAAGAACACGAAGCGGCGAAGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.39

Weight (kDa)

9.8

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 19 - 79 1.5e-13 XH domain
XH PF03469 78 - 127 4.5e-18 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 388
AcsI RAATTY 1 cut(s) 304
AfiI CCNNNNNNNGG 2 cut(s) 199, 279
AflII CTTAAG 1 cut(s) 374
AgsI TTSAA 3 cut(s) 79, 89, 259
AluBI AGCT 2 cut(s) 6, 298
AluI AGCT 2 cut(s) 6, 298
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 209
AoxI GGCC 1 cut(s) 14
ApaI GGGCCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 304
AspS9I GGNCC 3 cut(s) 14, 15, 366
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 2 cut(s) 77, 247
AvaII GGWCC 1 cut(s) 366
BaeGI GKGCMC 1 cut(s) 18
BanII GRGCYC 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 107
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 1 cut(s) 400
BfmI CTRYAG 1 cut(s) 7
BfrI CTTAAG 1 cut(s) 374
BisI GCNGC 2 cut(s) 96, 389
BlsI GCNGC 2 cut(s) 97, 390
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 366
BmgT120I GGNCC 3 cut(s) 14, 15, 366
BmiI GGNNCC 3 cut(s) 15, 16, 191
BmrFI CCNGG 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 62
BplI GAGNNNNNCTC 2 cut(s) 137, 169
BpuMI CCSGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 279
Bse1I ACTGG 1 cut(s) 273
Bse3DI GCAATG 1 cut(s) 368
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 2 cut(s) 199, 279
BseMI GCAATG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 273
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 1 cut(s) 107
BshFI GGCC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 199, 279
BsmAI GTCTC 1 cut(s) 209
BsnI GGCC 1 cut(s) 16
Bsp120I GGGCCC 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 18, 155
Bsp143I GATC 2 cut(s) 67, 262
BspACI CCGC 1 cut(s) 388
BspANI GGCC 1 cut(s) 16
BspLI GGNNCC 3 cut(s) 15, 16, 191
BspTI CTTAAG 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 368
BsrI ACTGG 1 cut(s) 273
BssMI GATC 2 cut(s) 67, 262
Bst4CI ACNGT 1 cut(s) 370
BstAFI CTTAAG 1 cut(s) 374
BstEII GGTNACC 1 cut(s) 235
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 2 cut(s) 70, 265
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 2 cut(s) 67, 262
BstPI GGTNACC 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 7
BstSLI GKGCMC 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 147, 280
Cfr13I GGNCC 3 cut(s) 14, 15, 366
CviJI RGCY 4 cut(s) 6, 16, 98, 298
CviKI_1 RGCY 4 cut(s) 6, 16, 98, 298
DpnI GATC 2 cut(s) 69, 264
DpnII GATC 2 cut(s) 67, 262
DraI TTTAAA 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 366
Eco91I GGTNACC 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 14
EcoO65I GGTNACC 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 18
FaiI YATR 9 cut(s) 43, 45, 111, 158, 171, 196, 209, 267, 285
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 96, 389
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 96, 389
FspBI CTAG 1 cut(s) 400
GluI GCNGC 2 cut(s) 96, 389
HaeIII GGCC 1 cut(s) 16
HapII CCGG 1 cut(s) 18
HpaII CCGG 1 cut(s) 18
HphI GGTGA 2 cut(s) 77, 247
Hpy188III TCNNGA 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 73, 316
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4V TGCA 2 cut(s) 95, 116
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 2 cut(s) 67, 262
LpnPI CCDG 4 cut(s) 31, 204, 286, 300
Lsp1109I GCAGC 1 cut(s) 107
MaeI CTAG 1 cut(s) 400
MaeIII GTNAC 1 cut(s) 235
MalI GATC 2 cut(s) 69, 264
MboI GATC 2 cut(s) 67, 262
MboII GAAGA 3 cut(s) 67, 117, 134
MhlI GDGCHC 2 cut(s) 18, 155
MluCI AATT 3 cut(s) 254, 268, 304
MnlI CCTC 5 cut(s) 129, 157, 273, 312, 331
MseI TTAA 4 cut(s) 248, 309, 333, 375
MspCI CTTAAG 1 cut(s) 374
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 18
NciI CCSGG 1 cut(s) 18
NdeII GATC 2 cut(s) 67, 262
NlaIV GGNNCC 3 cut(s) 15, 16, 191
NmuCI GTSAC 1 cut(s) 235
PkrI GCNGC 2 cut(s) 97, 390
PspEI GGTNACC 1 cut(s) 235
PspN4I GGNNCC 3 cut(s) 15, 16, 191
PspOMI GGGCCC 1 cut(s) 14
PspPI GGNCC 3 cut(s) 14, 15, 366
SaqAI TTAA 4 cut(s) 248, 309, 333, 375
SatI GCNGC 2 cut(s) 96, 389
Sau3AI GATC 2 cut(s) 67, 262
Sau96I GGNCC 3 cut(s) 14, 15, 366
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 2 cut(s) 18, 155
SetI ASST 4 cut(s) 8, 204, 284, 300
SfcI CTRYAG 1 cut(s) 7
SinI GGWCC 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 3 cut(s) 254, 268, 304
SsiI CCGC 1 cut(s) 388
SspMI CTAG 1 cut(s) 400
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 370
TasI AATT 3 cut(s) 254, 268, 304
TauI GCSGC 1 cut(s) 391
Tru1I TTAA 4 cut(s) 248, 309, 333, 375
Tru9I TTAA 4 cut(s) 248, 309, 333, 375
TscAI CASTG 2 cut(s) 147, 280
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 235
TspRI CASTG 2 cut(s) 147, 280
Vha464I CTTAAG 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 366
XapI RAATTY 1 cut(s) 304
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XspI CTAG 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.