Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002915.1

Orthogroup ID

OG0000340

Physical Location & Seq

Genomic Coordinates Reverse (-)

62995 .. 63345

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002915.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ctgagtcttgtcaacttggttctcatcaccctctattcacaaatcacaatagaggggaattttatctttatcttagtattatatgctgtcacagcgagcttgtcttgttgggtgcaggagattatagatgaagaagatgaaaaactggcaggtttgaagaatgagcttggtgatgaagtggcccaggcagttgtcactgccatgatggaactgaatgagtataatcccagtggcaggtattcagtaagagagctatggaactacaaagaagggaggaaggccactctgaaagagggagcaagttatattctgaagcagtggaaactgcagaagggtcggagaagaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

116

Amino Acids

13.3

Weight (kDa)

5.54

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica	Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis	pycom01g15630
rosa_chinensis	RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata	RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora	Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii	Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa	Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha	Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana	Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	140, 225
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	3 cut(s)	99, 166, 253
AluI	AGCT	3 cut(s)	99, 166, 253
AoxI	GGCC	2 cut(s)	180, 279
ApoI	RAATTY	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	19, 182
BccI	CCATC	1 cut(s)	199
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BciT130I	CCWGG	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	326
BfuAI	ACCTGC	2 cut(s)	140, 225
Bme1390I	CCNGG	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	185
BmrI	ACTGGG	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse1I	ACTGG	2 cut(s)	150, 228
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	150, 228
BsgI	GTGCAG	1 cut(s)	134
BshFI	GGCC	2 cut(s)	182, 281
BslI	CCNNNNNNNGG	1 cut(s)	234
BsnI	GGCC	2 cut(s)	182, 281
BspANI	GGCC	2 cut(s)	182, 281
BspMAI	CTGCAG	1 cut(s)	330
BspMI	ACCTGC	2 cut(s)	140, 225
BsrI	ACTGG	2 cut(s)	150, 228
BssECI	CCNNGG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	2 cut(s)	2, 73
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	183
BstSFI	CTRYAG	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	182, 281
BtsI	GCAGTG	2 cut(s)	195, 323
BtsIMutI	CAGTG	3 cut(s)	195, 235, 323
BveI	ACCTGC	2 cut(s)	140, 225
Cac8I	GCNNGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	181
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	5 cut(s)	99, 166, 182, 253, 281
CviKI_1	RGCY	5 cut(s)	99, 166, 182, 253, 281
DdeI	CTNAG	2 cut(s)	2, 73
Eco57I	CTGAAG	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	205
FaiI	YATR	7 cut(s)	82, 84, 125, 203, 222, 256, 306
FatI	CATG	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	182, 281
Hin1II	CATG	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	2 cut(s)	19, 182
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	3 cut(s)	288, 312, 339
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	3 cut(s)	263, 271, 325
HpyCH4V	TGCA	2 cut(s)	115, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	2, 73
Hsp92II	CATG	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	7 cut(s)	101, 131, 135, 170, 197, 220, 241
MaeIII	GTNAC	2 cut(s)	88, 193
MboII	GAAGA	3 cut(s)	143, 146, 169
MluCI	AATT	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	4 cut(s)	41, 46, 267, 286
MslI	CAYNNNNRTG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	205
NmuCI	GTSAC	2 cut(s)	88, 193
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	330
RseI	CAYNNNNRTG	1 cut(s)	200
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	185
SetI	ASST	5 cut(s)	101, 154, 168, 239, 255
SfcI	CTRYAG	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	183
TasI	AATT	1 cut(s)	58
TscAI	CASTG	3 cut(s)	202, 235, 323
TseFI	GTSAC	2 cut(s)	88, 193
Tsp45I	GTSAC	2 cut(s)	88, 193
TspDTI	ATGAA	3 cut(s)	144, 153, 189
TspRI	CASTG	3 cut(s)	202, 235, 323
XapI	RAATTY	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.