FvH4_3g24990

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000340
Physical Location & Seq
Forward (+)
18023779 .. 18027941
4163 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24990.t4

Sequence Viewer

Length: 1251 bp
ATGAACTTGAACAAAAGCATGCTCCAGGAGCTGTGCCAATCCAAAGGATGGGCCTTGCCCAAGTACAGCGGCACCCAGCAAGGCCCCCCTCACCAACCTCGCTTCTCCGCCTCTGTCCTCGTCCATGGCTTCGCCTTCACCACCAACACTCCACTCTCCTCTAAGAAAGAAGCCGAGTGCTCTGTTGCTGGGTTAGCCTTGGATTACTTCCATCATAACCCACCACCCAAACGCGTCAAGTGCTTCTCTCACGTACCTTCCCTTCCTCCACCTTCACCACCAGGTTTGCTGTGTCTCACATATAAGGAGAATGAGACATGGAATGAGACAACTAGCACTGAGGGAAAGAAGGATACTTATGAACTGGAGCTAAAGTTCGCAGAAGAGAGAAAGCTTTGGCAGAGAGAAAAGCATCAGCTTCAACTAAAGAACATTGAACTGGAGAATCAGATTGATATGAAAAGGAAAGAGCTGGAGCACTGCCGCATGAAGCTGCATCACATGAATGAGAAAGCAGAATCAGATCAGAAGAAAGCTGAAAATCTGATATCGCTGGCAGAAAAGAGAAAGAGAGAAAATGAGAAACTTCACTCAGAAATCATGGAACTGAAAGACCGCCTCCAAGCCAAACAGGCAGCAAATGAGGATTTTGAAGCACAGATGAAGATTGAAGCACTTGAACAAACCTTAAAGGAGAAGGATCAGGAGCTTACTGATCTGTCAGAATTTTACAATGCACTGACTTTCAAGGAGAGAAGCAATAATGATGAGCTGCTGGATGCCCGTAAAGAGTTAATTGATGGACTGAAAGATAAGTCAAAAATCTATATTGGCGTGAAGACATTGGGTGACCTTGACTTGAAAGCATTTCAAGTTGCAGCAAAGAGAAGATATACTGCAGTAGAAGCAGATGAGAGGGCTGTGGAGTTGTGTTCTCAGTGGGAGGGGTATGTTGGGGATTCTAAATGGAACCCATTCAAGGTTATTAGGGATGCGAAAGGAAAAAGAACGGAAATTATTGATGAAGATGACAAAAAGTTGAAGGATCTGAAGAGTGAGCTGGGGGATGAAGTGTATAAGGTGGTGACAACTTCCTTACTGGAACTTAATGAACATAACTCAAGTGGGAGGTACAAGATACTAGAGCTCTGGAATTTCAAAGCAGGAAGGAAAGCAACTCTTGCTGAAGGAGTTGCTTACATCTTGAAGCTATGGAATGCGGTTAAGTATAAAAAGAGGCGAAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

417

Amino Acids

48.18

Weight (kDa)

8.59

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 5 - 68 6.1e-10 Double-stranded RNA binding motif
XH PF03469 280 - 335 9.4e-14 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccB7I CCANNNNNTGG 1 cut(s) 48
AccII CGCG 1 cut(s) 234
AciI CCGC 5 cut(s) 69, 108, 484, 616, 1220
AclWI GGATC 2 cut(s) 708, 1053
AcsI RAATTY 2 cut(s) 725, 1153
AcuI CTGAAG 2 cut(s) 1070, 1206
AfaI GTAC 3 cut(s) 65, 255, 1133
AfiI CCNNNNNNNGG 2 cut(s) 48, 979
AflIII ACRYGT 1 cut(s) 232
AjnI CCWGG 2 cut(s) 24, 280
AloI GAACNNNNNNTCC 2 cut(s) 359, 391
Alw21I GWGCWC 3 cut(s) 182, 480, 1149
Alw26I GTCTC 3 cut(s) 299, 308, 320
AlwI GGATC 2 cut(s) 708, 1053
AlwNI CAGNNNCTG 1 cut(s) 31
AoxI GGCC 2 cut(s) 51, 82
ApeKI GCWGC 4 cut(s) 493, 635, 772, 878
ApoI RAATTY 2 cut(s) 725, 1153
Asp700I GAANNNNTTC 1 cut(s) 974
AspS9I GGNCC 2 cut(s) 51, 83
AsuHPI GGTGA 5 cut(s) 83, 130, 267, 860, 1096
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 1149
BarI GAAGNNNNNNTAC 2 cut(s) 246, 278
BbsI GAAGAC 1 cut(s) 845
Bbv12I GWGCWC 3 cut(s) 182, 480, 1149
BbvI GCAGC 4 cut(s) 480, 647, 759, 890
BccI CCATC 3 cut(s) 42, 219, 794
BciT130I CCWGG 2 cut(s) 26, 282
BciVI GTATCC 1 cut(s) 346
BcoDI GTCTC 3 cut(s) 299, 308, 320
BfaI CTAG 2 cut(s) 333, 1142
BfmI CTRYAG 1 cut(s) 897
BfuI GTATCC 1 cut(s) 346
BglI GCCNNNNNGGC 1 cut(s) 632
BisI GCNGC 6 cut(s) 70, 484, 494, 636, 773, 879
BlsI GCNGC 6 cut(s) 71, 485, 495, 637, 774, 880
Bme1390I CCNGG 2 cut(s) 26, 282
BmgT120I GGNCC 2 cut(s) 51, 83
BmiI GGNNCC 3 cut(s) 73, 85, 971
BmrFI CCNGG 2 cut(s) 26, 282
BmsI GCATC 4 cut(s) 421, 505, 769, 982
BpiI GAAGAC 1 cut(s) 845
BpmI CTGGAG 4 cut(s) 8, 386, 461, 494
BpuEI CTTGAG 1 cut(s) 1105
BsaAI YACGTR 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 124, 198
BsaXI ACNNNNNCTCC 4 cut(s) 133, 163, 359, 389
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 979
Bse1I ACTGG 3 cut(s) 369, 444, 1104
BseBI CCWGG 2 cut(s) 26, 282
BseDI CCNNGG 2 cut(s) 124, 198
BseGI GGATG 4 cut(s) 53, 784, 997, 1072
BseLI CCNNNNNNNGG 2 cut(s) 48, 979
BseMII CTCAG 3 cut(s) 330, 606, 950
BseNI ACTGG 3 cut(s) 369, 444, 1104
BseRI GAGGAG 1 cut(s) 148
BseXI GCAGC 4 cut(s) 480, 647, 759, 890
BseYI CCCAGC 3 cut(s) 75, 188, 1060
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 2 cut(s) 53, 84
BshNI GGYRCC 1 cut(s) 71
BsiHKAI GWGCWC 3 cut(s) 182, 480, 1149
BslI CCNNNNNNNGG 2 cut(s) 48, 979
BsmAI GTCTC 3 cut(s) 299, 308, 320
BsmI GAATGC 1 cut(s) 1222
BsnI GGCC 2 cut(s) 53, 84
Bsp1286I GDGCHC 3 cut(s) 182, 480, 1149
Bsp143I GATC 4 cut(s) 523, 700, 715, 1045
Bsp19I CCATGG 1 cut(s) 124
BspACI CCGC 5 cut(s) 69, 108, 484, 616, 1220
BspANI GGCC 2 cut(s) 53, 84
BspCNI CTCAG 3 cut(s) 331, 605, 949
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 3 cut(s) 73, 85, 971
BspMAI CTGCAG 1 cut(s) 901
BspPI GGATC 2 cut(s) 708, 1053
BspT107I GGYRCC 1 cut(s) 71
BsrI ACTGG 3 cut(s) 369, 444, 1104
BssECI CCNNGG 2 cut(s) 124, 198
BssMI GATC 4 cut(s) 523, 700, 715, 1045
BssT1I CCWWGG 2 cut(s) 124, 198
Bst2UI CCWGG 2 cut(s) 26, 282
Bst6I CTCTTC 2 cut(s) 378, 1046
BstAPI GCANNNNNTGC 1 cut(s) 1181
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 20, 555
BstDEI CTNAG 4 cut(s) 162, 339, 592, 936
BstDSI CCRYGG 1 cut(s) 124
BstEII GGTNACC 1 cut(s) 848
BstF5I GGATG 4 cut(s) 53, 784, 997, 1072
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 4 cut(s) 526, 703, 718, 1048
BstMAI GTCTC 3 cut(s) 299, 308, 320
BstMBI GATC 4 cut(s) 523, 700, 715, 1045
BstMWI GCNNNNNNNGC 6 cut(s) 28, 194, 240, 632, 905, 1181
BstNI CCWGG 2 cut(s) 26, 282
BstNSI RCATGY 1 cut(s) 22
BstPI GGTNACC 1 cut(s) 848
BstSCI CCNGG 2 cut(s) 24, 280
BstSFI CTRYAG 1 cut(s) 897
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 4 cut(s) 480, 647, 759, 890
BstV2I GAAGAC 1 cut(s) 845
BstX2I RGATCY 1 cut(s) 1045
BstYI RGATCY 1 cut(s) 1045
BsuI GTATCC 1 cut(s) 346
BsuRI GGCC 2 cut(s) 53, 84
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 4 cut(s) 53, 784, 997, 1072
BtsI GCAGTG 1 cut(s) 478
BtsIMutI CAGTG 4 cut(s) 336, 478, 737, 944
Cac8I GCNNGC 2 cut(s) 20, 555
CaiI CAGNNNCTG 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 51, 83
CseI GACGC 1 cut(s) 223
CsiI ACCWGGT 1 cut(s) 280
Csp6I GTAC 3 cut(s) 64, 254, 1132
CspCI CAANNNNNGTGG 2 cut(s) 267, 302
CviAII CATG 6 cut(s) 19, 125, 318, 487, 502, 601
CviQI GTAC 3 cut(s) 64, 254, 1132
DdeI CTNAG 4 cut(s) 162, 339, 592, 936
DpnI GATC 4 cut(s) 525, 702, 717, 1047
DpnII GATC 4 cut(s) 523, 700, 715, 1045
Eam1104I CTCTTC 2 cut(s) 378, 1046
EarI CTCTTC 2 cut(s) 378, 1046
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 1147
Eco130I CCWWGG 2 cut(s) 124, 198
Eco24I GRGCYC 1 cut(s) 1149
Eco32I GATATC 1 cut(s) 549
Eco53kI GAGCTC 1 cut(s) 1147
Eco57I CTGAAG 2 cut(s) 1070, 1206
Eco91I GGTNACC 1 cut(s) 848
EcoICRI GAGCTC 1 cut(s) 1147
EcoO109I RGGNCCY 1 cut(s) 83
EcoO65I GGTNACC 1 cut(s) 848
EcoRII CCWGG 2 cut(s) 24, 280
EcoRV GATATC 1 cut(s) 549
EcoT14I CCWWGG 2 cut(s) 124, 198
EcoT38I GRGCYC 1 cut(s) 1149
ErhI CCWWGG 2 cut(s) 124, 198
FaeI CATG 6 cut(s) 22, 128, 321, 490, 505, 604
FalI AAGNNNNNCTT 2 cut(s) 1164, 1196
FatI CATG 6 cut(s) 18, 124, 317, 486, 501, 600
Fnu4HI GCNGC 6 cut(s) 70, 484, 494, 636, 773, 879
FokI GGATG 4 cut(s) 60, 791, 1004, 1079
FriOI GRGCYC 1 cut(s) 1149
Fsp4HI GCNGC 6 cut(s) 70, 484, 494, 636, 773, 879
FspBI CTAG 2 cut(s) 333, 1142
GluI GCNGC 6 cut(s) 70, 484, 494, 636, 773, 879
GsaI CCCAGC 3 cut(s) 79, 192, 1064
GsuI CTGGAG 4 cut(s) 8, 386, 461, 494
HaeIII GGCC 2 cut(s) 53, 84
HgaI GACGC 1 cut(s) 223
Hin1II CATG 6 cut(s) 22, 128, 321, 490, 505, 604
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 3 cut(s) 445, 518, 959
HphI GGTGA 5 cut(s) 83, 130, 267, 860, 1096
Hpy188I TCNGA 7 cut(s) 450, 523, 528, 546, 595, 724, 1050
Hpy188III TCNNGA 3 cut(s) 704, 1150, 1204
HpyAV CCTTC 9 cut(s) 145, 267, 272, 282, 343, 691, 1036, 1161, 1181
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 4 cut(s) 496, 737, 878, 899
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 194, 240, 632, 905, 1181
HpyF3I CTNAG 4 cut(s) 162, 339, 592, 936
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 6 cut(s) 22, 128, 321, 490, 505, 604
Kzo9I GATC 4 cut(s) 523, 700, 715, 1045
LmnI GCTCC 5 cut(s) 27, 28, 367, 475, 706
Lsp1109I GCAGC 4 cut(s) 480, 647, 759, 890
LweI GCATC 4 cut(s) 421, 505, 769, 982
MabI ACCWGGT 1 cut(s) 280
MaeI CTAG 2 cut(s) 333, 1142
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 848, 1084
MalI GATC 4 cut(s) 525, 702, 717, 1047
MboI GATC 4 cut(s) 523, 700, 715, 1045
MboII GAAGA 7 cut(s) 395, 541, 676, 850, 900, 1037, 1063
MflI RGATCY 1 cut(s) 1045
MhlI GDGCHC 3 cut(s) 182, 480, 1149
MluCI AATT 4 cut(s) 725, 795, 1014, 1153
MluI ACGCGT 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 974
MseI TTAA 4 cut(s) 689, 794, 1107, 1224
MslI CAYNNNNRTG 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 69
MspR9I CCNGG 2 cut(s) 26, 282
Mva1269I GAATGC 1 cut(s) 1222
MvaI CCWGG 2 cut(s) 26, 282
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 6 cut(s) 28, 194, 240, 632, 905, 1181
NcoI CCATGG 1 cut(s) 124
NdeII GATC 4 cut(s) 523, 700, 715, 1045
NlaIII CATG 6 cut(s) 22, 128, 321, 490, 505, 604
NlaIV GGNNCC 3 cut(s) 73, 85, 971
NmeAIII GCCGAG 1 cut(s) 199
NmuCI GTSAC 2 cut(s) 848, 1084
NspI RCATGY 1 cut(s) 22
PaeI GCATGC 1 cut(s) 22
PctI GAATGC 1 cut(s) 1222
PdmI GAANNNNTTC 1 cut(s) 974
PfeI GAWTC 3 cut(s) 445, 518, 959
PflMI CCANNNNNTGG 1 cut(s) 48
PfoI TCCNGGA 1 cut(s) 24
PkrI GCNGC 6 cut(s) 71, 485, 495, 637, 774, 880
Ppu21I YACGTR 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 1149
Psp6I CCWGG 2 cut(s) 24, 280
PspEI GGTNACC 1 cut(s) 848
PspFI CCCAGC 3 cut(s) 75, 188, 1060
PspGI CCWGG 2 cut(s) 24, 280
PspN4I GGNNCC 3 cut(s) 73, 85, 971
PspPI GGNCC 2 cut(s) 51, 83
PstI CTGCAG 1 cut(s) 901
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 1045
RsaI GTAC 3 cut(s) 65, 255, 1133
RsaNI GTAC 3 cut(s) 64, 254, 1132
RseI CAYNNNNRTG 1 cut(s) 504
SacI GAGCTC 1 cut(s) 1149
SaqAI TTAA 4 cut(s) 689, 794, 1107, 1224
SatI GCNGC 6 cut(s) 70, 484, 494, 636, 773, 879
Sau3AI GATC 4 cut(s) 523, 700, 715, 1045
Sau96I GGNCC 2 cut(s) 51, 83
ScrFI CCNGG 2 cut(s) 26, 282
SduI GDGCHC 3 cut(s) 182, 480, 1149
SexAI ACCWGGT 1 cut(s) 280
SfaNI GCATC 4 cut(s) 421, 505, 769, 982
SfcI CTRYAG 1 cut(s) 897
SmiMI CAYNNNNRTG 1 cut(s) 504
SmlI CTYRAG 1 cut(s) 1120
SmoI CTYRAG 1 cut(s) 1120
SphI GCATGC 1 cut(s) 22
Sse9I AATT 4 cut(s) 725, 795, 1014, 1153
SsiI CCGC 5 cut(s) 69, 108, 484, 616, 1220
SspMI CTAG 2 cut(s) 333, 1142
SstI GAGCTC 1 cut(s) 1149
StyD4I CCNGG 2 cut(s) 24, 280
StyI CCWWGG 2 cut(s) 124, 198
TaiI ACGT 1 cut(s) 255
TasI AATT 4 cut(s) 725, 795, 1014, 1153
TatI WGTACW 1 cut(s) 63
TauI GCSGC 2 cut(s) 72, 486
TfiI GAWTC 3 cut(s) 445, 518, 959
Tru1I TTAA 4 cut(s) 689, 794, 1107, 1224
Tru9I TTAA 4 cut(s) 689, 794, 1107, 1224
TscAI CASTG 4 cut(s) 343, 485, 744, 944
TseFI GTSAC 2 cut(s) 848, 1084
TseI GCWGC 4 cut(s) 493, 635, 772, 878
Tsp45I GTSAC 2 cut(s) 848, 1084
TspDTI ATGAA 9 cut(s) 17, 375, 473, 503, 518, 677, 1038, 1083, 1125
TspGWI ACGGA 1 cut(s) 1025
TspRI CASTG 4 cut(s) 343, 485, 744, 944
Van91I CCANNNNNTGG 1 cut(s) 48
XapI RAATTY 2 cut(s) 725, 1153
XceI RCATGY 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 974
XspI CTAG 2 cut(s) 333, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.