Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000340

Physical Location & Seq

Genomic Coordinates Reverse (-)

71157372 .. 71162103

Gene Structure 4732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG443600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTCTCATAGATCAGAAGAAATGAATCTTGGACAATTACGGCAAATTGCCCGTGAACACCTTGAGAAAGTGTTTGTAGAACAGGATCAAGCCTTGTTGAAATATGAATCCCAAAAGCTTGATCTTAAGAAAGTGCTTGACCAGAGCGAGGCTCAGAAGAAAGAGCTCAAGATAGAGCTTGAGCAAAGAGAAAATGAGAAGAGAGAGCTTGAGAATGATCTTAAGCAGATTGAGTTGCAACTGCAAAAAGTGAATGAAAAGGCTGATGAACTGGTGTTATGGTTGGTTGAAGAACGAAAGAAATGGGAGAAAGAAAATAATATACTTCACAGGAAAGTTACCGAGTTGGGGAAACAGCTAGACATGAAAAAGAGCTACATTGATGAGTTGGAAGTTAAGACCAATGAAATAAAAGAAAAATTAATGAAGGAAAAGGAAGATGAATTGGAGGATATTGAAGCACTTAACCAAGTACTTATTGTCGAGGGGAATAACAAGAATGCTGAACTACAGGAGGCTCGTCATGCGTTGATTATGGGATTGAAGGAATCAGAAAGCGACACTATTGGTGTGAAGATAATGGGAGATCTTGAGAAACAGCCATTTGTTGCTGCAACCAAGAGAGCTGCTGACAGTACGGCTGCTGGCAATACGGCTGCAGAGCTGTGCTCTCTTTGGGAGCAATATCTTAGAGATCCGAATTGGCATCCATTCAAAATTATCACTGATAAAGATGGAAAGACACTGGAAGTTATTGATGAAGATGATGAAAAATTGGAGGACTTGAAGACAGAATTTGGTGGTGAAGTTTTTGAAGCTGTGAAAACTGCCCTGGCTGAATTGAACGAGTATAATCCAAGTGGCAGATATCCAATACTAGAGCTTTGGAATTTCAGGGAAAACAGGAAGGCTGCGTTAGCAGAGGGTGTATCCCATCTACTGAACCAGATGAAACCTAATAAGCGGAGAAATGTTCTTCCAACGTCTGGTTGGAAGCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

334

Amino Acids

38.84

Weight (kDa)

5.11

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	192 - 323	1.1e-50	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica	Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis	pycom01g15630
rosa_chinensis	RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata	RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora	Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii	Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa	Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha	Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana	Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	986
AciI	CCGC	1 cut(s)	964
AclWI	GGATC	2 cut(s)	93, 689
AcsI	RAATTY	2 cut(s)	794, 889
AfaI	GTAC	2 cut(s)	474, 637
AfiI	CCNNNNNNNGG	3 cut(s)	148, 348, 986
AflII	CTTAAG	2 cut(s)	125, 221
AgsI	TTSAA	8 cut(s)	100, 290, 458, 544, 715, 787, 815, 844
AjnI	CCWGG	1 cut(s)	831
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
Alw21I	GWGCWC	2 cut(s)	168, 671
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	93, 689
ApeKI	GCWGC	5 cut(s)	611, 626, 641, 656, 911
ApoI	RAATTY	2 cut(s)	794, 889
AseI	ATTAAT	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	815
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	794
Bbv12I	GWGCWC	2 cut(s)	168, 671
BbvI	GCAGC	5 cut(s)	598, 613, 628, 643, 898
BccI	CCATC	2 cut(s)	728, 942
BceAI	ACGGC	3 cut(s)	56, 654, 669
BciT130I	CCWGG	1 cut(s)	833
BciVI	GTATCC	1 cut(s)	940
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	359, 878
BfmI	CTRYAG	2 cut(s)	509, 657
BfrI	CTTAAG	2 cut(s)	125, 221
BfuI	GTATCC	1 cut(s)	940
BglII	AGATCT	1 cut(s)	586
BisI	GCNGC	5 cut(s)	612, 627, 642, 657, 912
BlsI	GCNGC	5 cut(s)	613, 628, 643, 658, 913
BmcAI	AGTACT	1 cut(s)	474
Bme1390I	CCNGG	1 cut(s)	833
BmrFI	CCNGG	1 cut(s)	833
BmsI	GCATC	1 cut(s)	715
BpiI	GAAGAC	1 cut(s)	794
BplI	GAGNNNNNCTC	4 cut(s)	136, 168, 653, 685
BpuEI	CTTGAG	5 cut(s)	83, 152, 200, 230, 611
BsaJI	CCNNGG	1 cut(s)	831
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 348, 986
Bse1I	ACTGG	2 cut(s)	276, 750
BseBI	CCWGG	1 cut(s)	833
BseDI	CCNNGG	1 cut(s)	831
BseGI	GGATG	1 cut(s)	706
BseLI	CCNNNNNNNGG	3 cut(s)	148, 348, 986
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	2 cut(s)	276, 750
BseXI	GCAGC	5 cut(s)	598, 613, 628, 643, 898
BsiHKAI	GWGCWC	2 cut(s)	168, 671
BslI	CCNNNNNNNGG	3 cut(s)	148, 348, 986
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	505
Bsp1286I	GDGCHC	2 cut(s)	168, 671
Bsp143I	GATC	6 cut(s)	11, 85, 121, 217, 586, 694
BspACI	CCGC	1 cut(s)	964
BspCNI	CTCAG	1 cut(s)	166
BspMAI	CTGCAG	1 cut(s)	661
BspPI	GGATC	2 cut(s)	93, 689
BspTI	CTTAAG	2 cut(s)	125, 221
BsrI	ACTGG	2 cut(s)	276, 750
BssECI	CCNNGG	1 cut(s)	831
BssMI	GATC	6 cut(s)	11, 85, 121, 217, 586, 694
Bst2UI	CCWGG	1 cut(s)	833
Bst4CI	ACNGT	1 cut(s)	635
Bst6I	CTCTTC	1 cut(s)	194
BstAFI	CTTAAG	2 cut(s)	125, 221
BstC8I	GCNNGC	1 cut(s)	646
BstDEI	CTNAG	2 cut(s)	153, 689
BstF5I	GGATG	1 cut(s)	706
BstKTI	GATC	6 cut(s)	14, 88, 124, 220, 589, 697
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	6 cut(s)	11, 85, 121, 217, 586, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	524, 917
BstNI	CCWGG	1 cut(s)	833
BstSCI	CCNGG	1 cut(s)	831
BstSFI	CTRYAG	2 cut(s)	509, 657
BstV1I	GCAGC	5 cut(s)	598, 613, 628, 643, 898
BstV2I	GAAGAC	1 cut(s)	794
BstX2I	RGATCY	2 cut(s)	586, 694
BstYI	RGATCY	2 cut(s)	586, 694
BsuI	GTATCC	1 cut(s)	940
BtsCI	GGATG	1 cut(s)	706
BtsIMutI	CAGTG	2 cut(s)	723, 743
Cac8I	GCNNGC	1 cut(s)	646
Csp6I	GTAC	2 cut(s)	473, 636
CviAII	CATG	2 cut(s)	364, 524
CviQI	GTAC	2 cut(s)	473, 636
DdeI	CTNAG	2 cut(s)	153, 689
DpnI	GATC	6 cut(s)	13, 87, 123, 219, 588, 696
DpnII	GATC	6 cut(s)	11, 85, 121, 217, 586, 694
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	869
Eco53kI	GAGCTC	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	831
EcoRV	GATATC	1 cut(s)	869
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	2 cut(s)	367, 527
FaiI	YATR	8 cut(s)	9, 105, 280, 323, 365, 525, 536, 852
FatI	CATG	2 cut(s)	363, 523
Fnu4HI	GCNGC	5 cut(s)	612, 627, 642, 657, 912
FokI	GGATG	1 cut(s)	693
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	5 cut(s)	612, 627, 642, 657, 912
FspBI	CTAG	2 cut(s)	359, 878
GluI	GCNGC	5 cut(s)	612, 627, 642, 657, 912
Hin1II	CATG	2 cut(s)	367, 527
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	3 cut(s)	25, 107, 548
HphI	GGTGA	1 cut(s)	815
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	4 cut(s)	16, 156, 553, 699
Hpy188III	TCNNGA	2 cut(s)	169, 590
Hpy8I	GTNNAC	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	421, 538, 901
HpyCH4III	ACNGT	1 cut(s)	635
HpyCH4IV	ACGT	1 cut(s)	983
HpyCH4V	TGCA	4 cut(s)	238, 244, 614, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	524, 917
HpyF3I	CTNAG	2 cut(s)	153, 689
HpySE526I	ACGT	1 cut(s)	983
Hsp92II	CATG	2 cut(s)	367, 527
Kzo9I	GATC	6 cut(s)	11, 85, 121, 217, 586, 694
LmnI	GCTCC	1 cut(s)	679
Lsp1109I	GCAGC	5 cut(s)	598, 613, 628, 643, 898
LweI	GCATC	1 cut(s)	715
MaeI	CTAG	2 cut(s)	359, 878
MaeII	ACGT	1 cut(s)	983
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	6 cut(s)	13, 87, 123, 219, 588, 696
MboI	GATC	6 cut(s)	11, 85, 121, 217, 586, 694
MboII	GAAGA	9 cut(s)	29, 169, 211, 302, 449, 586, 773, 799, 968
MflI	RGATCY	2 cut(s)	586, 694
MhlI	GDGCHC	2 cut(s)	168, 671
MmeI	TCCRAC	3 cut(s)	369, 971, 1004
MnlI	CCTC	6 cut(s)	142, 442, 478, 508, 772, 916
MseI	TTAA	5 cut(s)	126, 222, 396, 422, 465
MspCI	CTTAAG	2 cut(s)	125, 221
MspR9I	CCNGG	1 cut(s)	833
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	833
MwoI	GCNNNNNNNGC	2 cut(s)	524, 917
NdeII	GATC	6 cut(s)	11, 85, 121, 217, 586, 694
NlaIII	CATG	2 cut(s)	367, 527
PctI	GAATGC	1 cut(s)	505
PfeI	GAWTC	3 cut(s)	25, 107, 548
PflMI	CCANNNNNTGG	1 cut(s)	986
PkrI	GCNGC	5 cut(s)	613, 628, 643, 658, 913
PshBI	ATTAAT	1 cut(s)	422
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	831
PspGI	CCWGG	1 cut(s)	831
PstI	CTGCAG	1 cut(s)	661
PsuI	RGATCY	2 cut(s)	586, 694
RsaI	GTAC	2 cut(s)	474, 637
RsaNI	GTAC	2 cut(s)	473, 636
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	5 cut(s)	126, 222, 396, 422, 465
SatI	GCNGC	5 cut(s)	612, 627, 642, 657, 912
Sau3AI	GATC	6 cut(s)	11, 85, 121, 217, 586, 694
ScaI	AGTACT	1 cut(s)	474
ScrFI	CCNGG	1 cut(s)	833
SduI	GDGCHC	2 cut(s)	168, 671
SfaNI	GCATC	1 cut(s)	715
SfcI	CTRYAG	2 cut(s)	509, 657
SmlI	CTYRAG	7 cut(s)	62, 125, 167, 179, 209, 221, 590
SmoI	CTYRAG	7 cut(s)	62, 125, 167, 179, 209, 221, 590
SsiI	CCGC	1 cut(s)	964
SspMI	CTAG	2 cut(s)	359, 878
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	831
TaaI	ACNGT	1 cut(s)	635
TaiI	ACGT	1 cut(s)	986
TaqI	TCGA	1 cut(s)	483
TatI	WGTACW	1 cut(s)	472
TfiI	GAWTC	3 cut(s)	25, 107, 548
Tru1I	TTAA	5 cut(s)	126, 222, 396, 422, 465
Tru9I	TTAA	5 cut(s)	126, 222, 396, 422, 465
TscAI	CASTG	2 cut(s)	730, 750
TseI	GCWGC	5 cut(s)	611, 626, 641, 656, 911
TspRI	CASTG	2 cut(s)	730, 750
Van91I	CCANNNNNTGG	1 cut(s)	986
Vha464I	CTTAAG	2 cut(s)	125, 221
VspI	ATTAAT	1 cut(s)	422
XapI	RAATTY	2 cut(s)	794, 889
XcmI	CCANNNNNNNNNTGG	1 cut(s)	987
XspI	CTAG	2 cut(s)	359, 878
ZrmI	AGTACT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.