Rmu_sc0009359.1_g000002

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009359.1
OG0000340
Physical Location & Seq
Reverse (-)
19509 .. 21461
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009359.1_g000002.1.cds

Sequence Viewer

Length: 591 bp
atgattgaccagctatggcagagagaaaagcaccagcttcaactaaaggacattgaattggagaatcagattgatatgaaaaagaatgagctggagcactgccgcaaggagctacaacatatgggattgaaaaatcattcaaaaatctatattggcttgaagacattgggtgttcttgacttgaaggcatttcaagttgcagccaagagaagatatactgcaatagaagaaacaaatgagagggcagtggagctgtgctctgtgtgggaggattatgttggggattctaattggaacccatacaaggaaattattgatgaagaagataaaaaattgaaaattttgaagactgagctgggggatgaagtatacaaggtggtgacaacttcgttaatggaattgaatgaacataattccagtgggaggtataggatacaagagctttggaatttgaaagcagggaggaaggcaacacttaaagagggagttgcttacattgtgaagcaatggaacacgcttaaagaacacgaagcggagaagaaactaaaagtaaggcatgtgtgtttatattttattacctccactgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

23.19

Weight (kDa)

7.71

Isoelectric Point (pI)

27.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 369
AciI CCGC 2 cut(s) 103, 533
AcsI RAATTY 2 cut(s) 339, 448
AfiI CCNNNNNNNGG 2 cut(s) 304, 423
AluBI AGCT 7 cut(s) 13, 37, 91, 112, 253, 355, 442
AluI AGCT 7 cut(s) 13, 37, 91, 112, 253, 355, 442
Alw21I GWGCWC 2 cut(s) 99, 260
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 2 cut(s) 339, 448
AsuHPI GGTGA 1 cut(s) 391
BbsI GAAGAC 2 cut(s) 167, 353
Bbv12I GWGCWC 2 cut(s) 99, 260
BbvI GCAGC 1 cut(s) 212
BciVI GTATCC 1 cut(s) 426
BfuI GTATCC 1 cut(s) 426
BisI GCNGC 2 cut(s) 103, 201
BlsI GCNGC 2 cut(s) 104, 202
BmiI GGNNCC 1 cut(s) 296
BpiI GAAGAC 2 cut(s) 167, 353
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpmI CTGGAG 1 cut(s) 113
Bsc4I CCNNNNNNNGG 2 cut(s) 304, 423
Bse1I ACTGG 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 512
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 2 cut(s) 304, 423
BseMI GCAATG 1 cut(s) 512
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 417
BseXI GCAGC 1 cut(s) 212
BseYI CCCAGC 1 cut(s) 355
BsiHKAI GWGCWC 2 cut(s) 99, 260
BslI CCNNNNNNNGG 2 cut(s) 304, 423
Bsp1286I GDGCHC 2 cut(s) 99, 260
BspACI CCGC 2 cut(s) 103, 533
BspCNI CTCAG 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 512
BsrI ACTGG 1 cut(s) 417
BssNAI GTATAC 1 cut(s) 370
Bst1107I GTATAC 1 cut(s) 370
Bst4CI ACNGT 1 cut(s) 586
BstDEI CTNAG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 367
BstNSI RCATGY 1 cut(s) 560
BstV1I GCAGC 1 cut(s) 212
BstV2I GAAGAC 2 cut(s) 167, 353
BstZ17I GTATAC 1 cut(s) 370
BsuI GTATCC 1 cut(s) 426
BtsCI GGATG 1 cut(s) 367
BtsI GCAGTG 2 cut(s) 97, 252
BtsIMutI CAGTG 4 cut(s) 97, 252, 424, 582
CviAII CATG 1 cut(s) 557
CviJI RGCY 9 cut(s) 13, 37, 91, 112, 156, 203, 253, 355, 442
CviKI_1 RGCY 9 cut(s) 13, 37, 91, 112, 156, 203, 253, 355, 442
DdeI CTNAG 1 cut(s) 351
FaeI CATG 1 cut(s) 560
FatI CATG 1 cut(s) 556
FauNDI CATATG 1 cut(s) 120
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 2 cut(s) 103, 201
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 2 cut(s) 103, 201
GluI GCNGC 2 cut(s) 103, 201
GsaI CCCAGC 1 cut(s) 359
GsuI CTGGAG 1 cut(s) 113
Hin1II CATG 1 cut(s) 560
HinfI GANTC 2 cut(s) 64, 284
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 2 cut(s) 178, 460
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4V TGCA 2 cut(s) 200, 221
HpyF3I CTNAG 1 cut(s) 351
Hsp92II CATG 1 cut(s) 560
LmnI GCTCC 3 cut(s) 94, 109, 250
LpnPI CCDG 6 cut(s) 23, 47, 77, 341, 430, 444
Lsp1109I GCAGC 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 379
MboII GAAGA 7 cut(s) 172, 222, 239, 332, 335, 358, 550
MhlI GDGCHC 2 cut(s) 99, 260
MluCI AATT 8 cut(s) 56, 289, 309, 332, 339, 398, 412, 448
MnlI CCTC 6 cut(s) 234, 262, 417, 456, 475, 589
MseI TTAA 3 cut(s) 392, 477, 519
NdeI CATATG 1 cut(s) 120
NlaIII CATG 1 cut(s) 560
NlaIV GGNNCC 1 cut(s) 296
NmuCI GTSAC 1 cut(s) 379
NspI RCATGY 1 cut(s) 560
PfeI GAWTC 2 cut(s) 64, 284
PkrI GCNGC 2 cut(s) 104, 202
PspFI CCCAGC 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 296
SaqAI TTAA 3 cut(s) 392, 477, 519
SatI GCNGC 2 cut(s) 103, 201
SduI GDGCHC 2 cut(s) 99, 260
Sse9I AATT 8 cut(s) 56, 289, 309, 332, 339, 398, 412, 448
SsiI CCGC 2 cut(s) 103, 533
TaaI ACNGT 1 cut(s) 586
TasI AATT 8 cut(s) 56, 289, 309, 332, 339, 398, 412, 448
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 2 cut(s) 64, 284
Tru1I TTAA 3 cut(s) 392, 477, 519
Tru9I TTAA 3 cut(s) 392, 477, 519
TscAI CASTG 4 cut(s) 104, 252, 424, 589
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 4 cut(s) 92, 333, 378, 420
TspRI CASTG 4 cut(s) 104, 252, 424, 589
XapI RAATTY 2 cut(s) 339, 448
XceI RCATGY 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.