RLG00000034306

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000340
Physical Location & Seq
Forward (+)
40300782 .. 40302894
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034306

Sequence Viewer

Length: 762 bp
ATGGGGGTGAGTGGGTTTCTTCGTGGAGAAGAACTTGTTTTGTTGACATGTGTACATGAAACGTTGACATTAATTTGGTTGCTGGAGCACTGCCACAAGAAGCTGCAGCAAACGAATGAGAAAGCAGAATCAGAGCAGAAGAAAGCAGAAAATCTGATAGTGCTGGCAGAAAAGAGAAAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAAGCCCAGAAGAAGATTAAAGCACTTGAACAAACGTTAAAGGAGAAGGCGCAGGAGCTTACTGATCTGTCAGAATTTTACAATGCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCATGGGGACATTGGTGATCTTGACTTGAAGGCATTTCAAGTTGCAGCCAAGAGAAGATATACTGCATTAGAAGAAGCAAATGAGAGGGCAGTGGAGTTGTGCTCTATGTGGGAGGATTATGTTGGGGATTCTAAATGGAACCCATACAAGGTTATTATGGATGAGACAGGAAAAAGAACGACTGAGCTGGGGGATGAAGTATACAAGGTTGTGACAACTTCGTTAAGGGAATTGAATGAACATAATTCCAGTGGGAGGTTTCAGATACAAGAGCTTTCGAATTTTAAAGCAGGGAGGAAGGCAACACTTAAAGAGGGAGTTGCTTACAATCTGAAGCAATGGACCGCGCTTAAGAACACGAAGTGGCGAAGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

29.37

Weight (kDa)

6.15

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 132 - 247 1.3e-31 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 585
AccII CGCG 1 cut(s) 731
AciI CCGC 1 cut(s) 729
AclI AACGTT 2 cut(s) 62, 296
AcsI RAATTY 2 cut(s) 335, 664
AcuI CTGAAG 1 cut(s) 737
AdeI CACNNNGTG 1 cut(s) 747
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 2 cut(s) 532, 639
AflII CTTAAG 1 cut(s) 734
AflIII ACRYGT 1 cut(s) 47
AgsI TTSAA 8 cut(s) 215, 220, 263, 290, 358, 412, 422, 619
AluBI AGCT 7 cut(s) 103, 196, 229, 319, 382, 571, 658
AluI AGCT 7 cut(s) 103, 196, 229, 319, 382, 571, 658
Alw21I GWGCWC 2 cut(s) 90, 488
Alw26I GTCTC 1 cut(s) 542
ApeKI GCWGC 4 cut(s) 103, 106, 382, 428
ApoI RAATTY 2 cut(s) 335, 664
AseI ATTAAT 1 cut(s) 71
AspLEI GCGC 2 cut(s) 313, 733
AspS9I GGNCC 1 cut(s) 726
AsuHPI GGTGA 2 cut(s) 19, 410
AsuII TTCGAA 1 cut(s) 662
AvaII GGWCC 1 cut(s) 726
Bbv12I GWGCWC 2 cut(s) 90, 488
BbvI GCAGC 4 cut(s) 90, 118, 369, 440
BcoDI GTCTC 1 cut(s) 542
BfaI CTAG 1 cut(s) 760
BfmI CTRYAG 1 cut(s) 104
BfrI CTTAAG 1 cut(s) 734
BglI GCCNNNNNGGC 1 cut(s) 242
BisI GCNGC 4 cut(s) 104, 107, 383, 429
BlsI GCNGC 4 cut(s) 105, 108, 384, 430
Bme18I GGWCC 1 cut(s) 726
BmgT120I GGNCC 1 cut(s) 726
BmiI GGNNCC 1 cut(s) 524
BplI GAGNNNNNCTC 2 cut(s) 470, 502
BpmI CTGGAG 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 662
Bsc4I CCNNNNNNNGG 2 cut(s) 532, 639
Bse1I ACTGG 1 cut(s) 633
Bse3DI GCAATG 1 cut(s) 728
BseGI GGATG 2 cut(s) 550, 583
BseLI CCNNNNNNNGG 2 cut(s) 532, 639
BseMI GCAATG 1 cut(s) 728
BseMII CTCAG 2 cut(s) 216, 558
BseNI ACTGG 1 cut(s) 633
BseRI GAGGAG 1 cut(s) 379
BseXI GCAGC 4 cut(s) 90, 118, 369, 440
BseYI CCCAGC 1 cut(s) 571
Bsh1236I CGCG 1 cut(s) 731
BsiHKAI GWGCWC 2 cut(s) 90, 488
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 2 cut(s) 532, 639
BsmAI GTCTC 1 cut(s) 542
BsmFI GGGAC 1 cut(s) 404
Bsp119I TTCGAA 1 cut(s) 662
Bsp1286I GDGCHC 2 cut(s) 90, 488
Bsp1407I TGTACA 1 cut(s) 52
Bsp143I GATC 2 cut(s) 325, 400
BspACI CCGC 1 cut(s) 729
BspCNI CTCAG 2 cut(s) 215, 559
BspFNI CGCG 1 cut(s) 731
BspLI GGNNCC 1 cut(s) 524
BspMAI CTGCAG 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 662
BspTI CTTAAG 1 cut(s) 734
BsrDI GCAATG 1 cut(s) 728
BsrGI TGTACA 1 cut(s) 52
BsrI ACTGG 1 cut(s) 633
BssMI GATC 2 cut(s) 325, 400
BssNAI GTATAC 1 cut(s) 586
Bst1107I GTATAC 1 cut(s) 586
BstAFI CTTAAG 1 cut(s) 734
BstAUI TGTACA 1 cut(s) 52
BstBI TTCGAA 1 cut(s) 662
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 202, 567
BstF5I GGATG 2 cut(s) 550, 583
BstFNI CGCG 1 cut(s) 731
BstHHI GCGC 2 cut(s) 313, 733
BstKTI GATC 2 cut(s) 328, 403
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 2 cut(s) 325, 400
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 104
BstUI CGCG 1 cut(s) 731
BstV1I GCAGC 4 cut(s) 90, 118, 369, 440
BstZ17I GTATAC 1 cut(s) 586
BtsCI GGATG 2 cut(s) 550, 583
BtsI GCAGTG 3 cut(s) 88, 252, 480
BtsIMutI CAGTG 5 cut(s) 88, 252, 347, 480, 640
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 2 cut(s) 313, 733
Cfr13I GGNCC 1 cut(s) 726
Csp6I GTAC 1 cut(s) 53
CviAII CATG 3 cut(s) 48, 56, 386
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 2 cut(s) 202, 567
DpnI GATC 2 cut(s) 327, 402
DpnII GATC 2 cut(s) 325, 400
DraI TTTAAA 1 cut(s) 670
DraIII CACNNNGTG 1 cut(s) 747
Eco47I GGWCC 1 cut(s) 726
Eco57I CTGAAG 1 cut(s) 737
FaeI CATG 3 cut(s) 51, 59, 389
FaqI GGGAC 1 cut(s) 404
FatI CATG 3 cut(s) 47, 55, 385
FblI GTMKAC 1 cut(s) 585
Fnu4HI GCNGC 4 cut(s) 104, 107, 383, 429
FokI GGATG 2 cut(s) 557, 590
Fsp4HI GCNGC 4 cut(s) 104, 107, 383, 429
FspBI CTAG 1 cut(s) 760
GlaI GCGC 2 cut(s) 312, 732
GluI GCNGC 4 cut(s) 104, 107, 383, 429
GsaI CCCAGC 1 cut(s) 575
GsuI CTGGAG 1 cut(s) 104
HhaI GCGC 2 cut(s) 313, 733
Hin1II CATG 3 cut(s) 51, 59, 389
Hin6I GCGC 2 cut(s) 311, 731
HinP1I GCGC 2 cut(s) 311, 731
HincII GTYRAC 2 cut(s) 45, 66
HindII GTYRAC 2 cut(s) 45, 66
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 2 cut(s) 128, 512
HphI GGTGA 2 cut(s) 19, 410
Hpy166II GTNNAC 4 cut(s) 45, 53, 66, 586
Hpy188I TCNGA 6 cut(s) 133, 156, 205, 334, 648, 717
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 4 cut(s) 45, 53, 66, 586
HpyAV CCTTC 3 cut(s) 301, 406, 676
HpyCH4IV ACGT 2 cut(s) 62, 296
HpyCH4V TGCA 5 cut(s) 106, 347, 385, 428, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 2 cut(s) 202, 567
HpySE526I ACGT 2 cut(s) 62, 296
Hsp92II CATG 3 cut(s) 51, 59, 389
HspAI GCGC 2 cut(s) 311, 731
Kzo9I GATC 2 cut(s) 325, 400
LmnI GCTCC 4 cut(s) 85, 234, 316, 366
Lsp1109I GCAGC 4 cut(s) 90, 118, 369, 440
MaeI CTAG 1 cut(s) 760
MaeII ACGT 2 cut(s) 62, 296
MaeIII GTNAC 1 cut(s) 595
MalI GATC 2 cut(s) 327, 402
MboI GATC 2 cut(s) 325, 400
MboII GAAGA 7 cut(s) 11, 41, 151, 283, 286, 450, 467
MhlI GDGCHC 2 cut(s) 90, 488
MluCI AATT 7 cut(s) 72, 210, 215, 335, 614, 628, 664
MnlI CCTC 7 cut(s) 247, 357, 462, 490, 633, 672, 691
MseI TTAA 7 cut(s) 71, 279, 299, 608, 669, 693, 735
MspCI CTTAAG 1 cut(s) 734
MvnI CGCG 1 cut(s) 731
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 2 cut(s) 325, 400
NlaIII CATG 3 cut(s) 51, 59, 389
NlaIV GGNNCC 1 cut(s) 524
NmuCI GTSAC 1 cut(s) 595
NspI RCATGY 1 cut(s) 51
NspV TTCGAA 1 cut(s) 662
PciI ACATGT 1 cut(s) 47
PfeI GAWTC 2 cut(s) 128, 512
PkrI GCNGC 4 cut(s) 105, 108, 384, 430
PscI ACATGT 1 cut(s) 47
PshBI ATTAAT 1 cut(s) 71
Psp1406I AACGTT 2 cut(s) 62, 296
PspFI CCCAGC 1 cut(s) 571
PspN4I GGNNCC 1 cut(s) 524
PspPI GGNCC 1 cut(s) 726
PstI CTGCAG 1 cut(s) 108
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SaqAI TTAA 7 cut(s) 71, 279, 299, 608, 669, 693, 735
SatI GCNGC 4 cut(s) 104, 107, 383, 429
Sau3AI GATC 2 cut(s) 325, 400
Sau96I GGNCC 1 cut(s) 726
SduI GDGCHC 2 cut(s) 90, 488
SfcI CTRYAG 1 cut(s) 104
SfuI TTCGAA 1 cut(s) 662
SinI GGWCC 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
Sse9I AATT 7 cut(s) 72, 210, 215, 335, 614, 628, 664
SsiI CCGC 1 cut(s) 729
SspMI CTAG 1 cut(s) 760
TaiI ACGT 2 cut(s) 65, 299
TaqI TCGA 1 cut(s) 662
TasI AATT 7 cut(s) 72, 210, 215, 335, 614, 628, 664
TatI WGTACW 1 cut(s) 52
TfiI GAWTC 2 cut(s) 128, 512
Tru1I TTAA 7 cut(s) 71, 279, 299, 608, 669, 693, 735
Tru9I TTAA 7 cut(s) 71, 279, 299, 608, 669, 693, 735
TscAI CASTG 5 cut(s) 95, 252, 354, 480, 640
TseFI GTSAC 1 cut(s) 595
TseI GCWGC 4 cut(s) 103, 106, 382, 428
Tsp45I GTSAC 1 cut(s) 595
TspDTI ATGAA 3 cut(s) 72, 594, 636
TspRI CASTG 5 cut(s) 95, 252, 354, 480, 640
Vha464I CTTAAG 1 cut(s) 734
VpaK11BI GGWCC 1 cut(s) 726
VspI ATTAAT 1 cut(s) 71
XapI RAATTY 2 cut(s) 335, 664
XceI RCATGY 1 cut(s) 51
XmiI GTMKAC 1 cut(s) 585
XspI CTAG 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.