Rh2DG466500

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000340
Physical Location & Seq
Reverse (-)
67593024 .. 67594586
1563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG466500.1

Sequence Viewer

Length: 276 bp
ATGTCTGTGTATCAGAGAGAAAAGCATCAGCTAATTCAACTAAAGAACATTGAATTGGAGAATCAGATTGATACGAAAAAGAATGAGCTGGAGCACTGCCACAAGGAGCTACAGCATATGAATGAGAGAGCAGAATCAGAGCAGAAGAAGGCAGAAAATCTGATAGCGCTGGCAGAAAAGAGAAAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAACCAAACAGGCAGTGAATGAGGATTTTAAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.93

Weight (kDa)

6.21

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfeI AGCGCT 1 cut(s) 168
AgsI TTSAA 4 cut(s) 38, 53, 221, 226
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 5 cut(s) 31, 88, 109, 202, 235
AluI AGCT 5 cut(s) 31, 88, 109, 202, 235
Alw21I GWGCWC 1 cut(s) 96
Aor51HI AGCGCT 1 cut(s) 168
AoxI GGCC 1 cut(s) 270
AspLEI GCGC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 96
BfaI CTAG 1 cut(s) 274
BfmI CTRYAG 1 cut(s) 110
BfoI RGCGCY 1 cut(s) 170
BmsI GCATC 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 222
BshFI GGCC 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 96
BsnI GGCC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 96
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 208
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 110
BsuRI GGCC 1 cut(s) 272
BtsI GCAGTG 2 cut(s) 94, 258
BtsIMutI CAGTG 2 cut(s) 94, 258
Cac8I GCNNGC 1 cut(s) 171
CfoI GCGC 1 cut(s) 169
CviJI RGCY 6 cut(s) 31, 88, 109, 202, 235, 272
CviKI_1 RGCY 6 cut(s) 31, 88, 109, 202, 235, 272
DdeI CTNAG 1 cut(s) 208
Eco147I AGGCCT 1 cut(s) 272
Eco47III AGCGCT 1 cut(s) 168
FaiI YATR 2 cut(s) 117, 119
FauNDI CATATG 1 cut(s) 117
FspBI CTAG 1 cut(s) 274
GlaI GCGC 1 cut(s) 168
GsuI CTGGAG 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 1 cut(s) 272
HhaI GCGC 1 cut(s) 169
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 2 cut(s) 61, 134
Hpy188I TCNGA 5 cut(s) 15, 66, 139, 162, 211
HpyAV CCTTC 1 cut(s) 142
HpyF3I CTNAG 1 cut(s) 208
HspAI GCGC 1 cut(s) 167
LmnI GCTCC 3 cut(s) 91, 106, 240
LpnPI CCDG 4 cut(s) 74, 155, 233, 245
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 274
MboII GAAGA 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 4 cut(s) 33, 53, 216, 221
MnlI CCTC 1 cut(s) 253
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 120
NdeI CATATG 1 cut(s) 117
PceI AGGCCT 1 cut(s) 272
PfeI GAWTC 2 cut(s) 61, 134
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 1 cut(s) 267
SduI GDGCHC 1 cut(s) 96
SetI ASST 5 cut(s) 33, 90, 111, 204, 237
SfaNI GCATC 1 cut(s) 34
SfcI CTRYAG 1 cut(s) 110
SgeI CNNG 5 cut(s) 101, 115, 182, 244, 260
SmiMI CAYNNNNRTG 1 cut(s) 120
Sse9I AATT 4 cut(s) 33, 53, 216, 221
SseBI AGGCCT 1 cut(s) 272
SspMI CTAG 1 cut(s) 274
StuI AGGCCT 1 cut(s) 272
TasI AATT 4 cut(s) 33, 53, 216, 221
TfiI GAWTC 2 cut(s) 61, 134
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 2 cut(s) 101, 258
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 2 cut(s) 101, 258
XspI CTAG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.