Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000340

Physical Location & Seq

Genomic Coordinates Forward (+)

49582553 .. 49582969

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0370000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAACTTTGGTTCCACCGATTCTACTGGTAATGAAGGATTTCTTGATTTAATTTTTGTTTCATATTCTTCCTCACACTTCAACACTAATATCAGTACAACTCTTTTGGCACAACAGGAGGACAAACATCCCTGCAACAACAAGGAGGAGATCACCAGGAGATTGAAACCCTTCCATTGTTCCCCATGCCTGGTGAGGACATCTTTAGCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

138

Amino Acids

14.41

Weight (kDa)

5.44

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica	Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis	pycom01g15630
rosa_chinensis	RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata	RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora	Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii	Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa	Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha	Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana	Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	140
AclWI	GGATC	7 cut(s)	57, 70, 105, 118, 138, 151, 186
AfaI	GTAC	2 cut(s)	55, 298
AfiI	CCNNNNNNNGG	3 cut(s)	56, 140, 391
AgsI	TTSAA	2 cut(s)	283, 367
AhlI	ACTAGT	2 cut(s)	41, 170
AjnI	CCWGG	3 cut(s)	49, 356, 390
AloI	GAACNNNNNNTCC	2 cut(s)	31, 63
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
AlwI	GGATC	7 cut(s)	57, 70, 105, 118, 138, 151, 186
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	20
ArsI	GACNNNNNNTTYG	4 cut(s)	110, 142, 143, 175
AseI	ATTAAT	1 cut(s)	198
Asp700I	GAANNNNTTC	3 cut(s)	43, 240, 371
AspS9I	GGNCC	3 cut(s)	84, 131, 165
AsuHPI	GGTGA	2 cut(s)	346, 406
AvaII	GGWCC	2 cut(s)	84, 165
BaeGI	GKGCMC	1 cut(s)	33
BamHI	GGATCC	3 cut(s)	62, 110, 143
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	2 cut(s)	122, 179
BciT130I	CCWGG	3 cut(s)	51, 358, 392
BcuI	ACTAGT	2 cut(s)	41, 170
BfaI	CTAG	2 cut(s)	42, 171
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	3 cut(s)	51, 358, 392
Bme18I	GGWCC	2 cut(s)	84, 165
BmgT120I	GGNCC	3 cut(s)	84, 131, 165
BmiI	GGNNCC	6 cut(s)	64, 85, 112, 145, 166, 214
BmrFI	CCNGG	3 cut(s)	51, 358, 392
BpuEI	CTTGAG	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 140, 391
Bse1I	ACTGG	4 cut(s)	61, 94, 103, 232
BseBI	CCWGG	3 cut(s)	51, 358, 392
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	3 cut(s)	56, 140, 391
BseNI	ACTGG	4 cut(s)	61, 94, 103, 232
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	7
BshFI	GGCC	1 cut(s)	133
BslI	CCNNNNNNNGG	3 cut(s)	56, 140, 391
BsnI	GGCC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	6 cut(s)	62, 70, 110, 143, 191, 351
Bsp19I	CCATGG	1 cut(s)	33
BspANI	GGCC	1 cut(s)	133
BspLI	GGNNCC	6 cut(s)	64, 85, 112, 145, 166, 214
BspPI	GGATC	7 cut(s)	57, 70, 105, 118, 138, 151, 186
BsrI	ACTGG	4 cut(s)	61, 94, 103, 232
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	6 cut(s)	62, 70, 110, 143, 191, 351
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	3 cut(s)	51, 358, 392
BstC8I	GCNNGC	1 cut(s)	135
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	6 cut(s)	65, 73, 113, 146, 194, 354
BstMBI	GATC	6 cut(s)	62, 70, 110, 143, 191, 351
BstNI	CCWGG	3 cut(s)	51, 358, 392
BstSCI	CCNGG	3 cut(s)	49, 356, 390
BstSLI	GKGCMC	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	7
BstX2I	RGATCY	4 cut(s)	62, 110, 143, 191
BstYI	RGATCY	4 cut(s)	62, 110, 143, 191
BsuRI	GGCC	1 cut(s)	133
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	135
Cfr13I	GGNCC	3 cut(s)	84, 131, 165
Csp6I	GTAC	2 cut(s)	54, 297
CviAII	CATG	3 cut(s)	34, 387, 414
CviJI	RGCY	3 cut(s)	20, 133, 137
CviKI_1	RGCY	3 cut(s)	20, 133, 137
CviQI	GTAC	2 cut(s)	54, 297
DpnI	GATC	6 cut(s)	64, 72, 112, 145, 193, 353
DpnII	GATC	6 cut(s)	62, 70, 110, 143, 191, 351
Eco130I	CCWWGG	1 cut(s)	33
Eco47I	GGWCC	2 cut(s)	84, 165
EcoRII	CCWGG	3 cut(s)	49, 356, 390
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	3 cut(s)	37, 390, 417
FaiI	YATR	4 cut(s)	35, 265, 388, 415
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FatI	CATG	3 cut(s)	33, 386, 413
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	2 cut(s)	42, 171
GluI	GCNGC	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	133
Hin1II	CATG	3 cut(s)	37, 390, 417
HinfI	GANTC	1 cut(s)	221
HphI	GGTGA	2 cut(s)	346, 406
Hpy166II	GTNNAC	2 cut(s)	87, 168
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	2 cut(s)	87, 168
HpyAV	CCTTC	2 cut(s)	230, 382
HpyCH4V	TGCA	2 cut(s)	12, 336
Hsp92II	CATG	3 cut(s)	37, 390, 417
Kzo9I	GATC	6 cut(s)	62, 70, 110, 143, 191, 351
Lsp1109I	GCAGC	1 cut(s)	7
MaeI	CTAG	2 cut(s)	42, 171
MalI	GATC	6 cut(s)	64, 72, 112, 145, 193, 353
MboI	GATC	6 cut(s)	62, 70, 110, 143, 191, 351
MboII	GAAGA	2 cut(s)	16, 261
MflI	RGATCY	4 cut(s)	62, 110, 143, 191
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	4 cut(s)	76, 124, 157, 252
MnlI	CCTC	4 cut(s)	283, 313, 340, 390
MroXI	GAANNNNTTC	3 cut(s)	43, 240, 371
MseI	TTAA	2 cut(s)	198, 251
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	3 cut(s)	51, 358, 392
MvaI	CCWGG	3 cut(s)	51, 358, 392
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	6 cut(s)	62, 70, 110, 143, 191, 351
NlaIII	CATG	3 cut(s)	37, 390, 417
NlaIV	GGNNCC	6 cut(s)	64, 85, 112, 145, 166, 214
PdmI	GAANNNNTTC	3 cut(s)	43, 240, 371
PfeI	GAWTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	22
PshBI	ATTAAT	1 cut(s)	198
Psp6I	CCWGG	3 cut(s)	49, 356, 390
PspGI	CCWGG	3 cut(s)	49, 356, 390
PspN4I	GGNNCC	6 cut(s)	64, 85, 112, 145, 166, 214
PspPI	GGNCC	3 cut(s)	84, 131, 165
PsuI	RGATCY	4 cut(s)	62, 110, 143, 191
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	2 cut(s)	55, 298
RsaNI	GTAC	2 cut(s)	54, 297
SaqAI	TTAA	2 cut(s)	198, 251
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	6 cut(s)	62, 70, 110, 143, 191, 351
Sau96I	GGNCC	3 cut(s)	84, 131, 165
ScrFI	CCNGG	3 cut(s)	51, 358, 392
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	2 cut(s)	11, 139
SinI	GGWCC	2 cut(s)	84, 165
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
SpeI	ACTAGT	2 cut(s)	41, 170
Sse9I	AATT	4 cut(s)	76, 124, 157, 252
SspMI	CTAG	2 cut(s)	42, 171
StyD4I	CCNGG	3 cut(s)	49, 356, 390
StyI	CCWWGG	1 cut(s)	33
TaqI	TCGA	1 cut(s)	117
TasI	AATT	4 cut(s)	76, 124, 157, 252
TatI	WGTACW	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	2 cut(s)	198, 251
Tru9I	TTAA	2 cut(s)	198, 251
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	17, 249, 252
TspRI	CASTG	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	140
VpaK11BI	GGWCC	2 cut(s)	84, 165
VspI	ATTAAT	1 cut(s)	198
XmnI	GAANNNNTTC	3 cut(s)	43, 240, 371
XspI	CTAG	2 cut(s)	42, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.