RchiOBHm_Chr5g0062541

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000340
Physical Location & Seq
Forward (+)
68114270 .. 68115460
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33878

Sequence Viewer

Length: 819 bp
ATGAATAAATCTCTAATATTTCTTGCACTTTATTGTAATTGTAGAGAAAAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAGGCCCAAATGAATATTAAAGCACTTGAACAAATGTTAAAGGAGAAGGAGAAGGAGCAGGAGCTTACTGATCTGTCAGAATTTTACAATGCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCAGGGGGCCCGTAAAGAGGGAAGGCATTTTTGGATATGTAGTCTGCCAGCTATGTTTTGGGGACTGAAAAATCATTCAAAAATCTGTATTGGCGTGAAGACATTGGGTGATCTTGACTTGAAGGCATTTCAAGTTGCAGCCAAGAGAAGATATACTGCAATAGAAGAAGCAAATGAGAGGGCAGTGGAGTTGTGCTCTGTGTGGGAGGATTATGTTGGGGATTCTAATTGGAACCCATACAAGGTTATTATGGATGAGACAGGAAAAAGAATGGAAATTATTGATGAAGAAGATAAAAAATTGAAAAATTTGAAGACTGAGCTGGGGGATGAAGTATACAAGGTGGTGACAACTTCGTTAATGGAATTGAATGAACATAATTCCAGTTGGAGGTATAGGATACAAGAGCTTTGGAATTTTAAAGCAGGGAGGAAGGCAACACTTAAAGAGGGAGTTGCTTACATTCTGAAGCAATGGAACGCGCTTAAAGAACACGAAGCAGAGAAGAAACTAAAAGTAAGGCATAGGATTAATTTCAGTTTACCCCCTGAGGTTTGGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

31.99

Weight (kDa)

6.37

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 118 - 249 6.5e-49 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 591
AccII CGCG 1 cut(s) 737
AcsI RAATTY 3 cut(s) 206, 562, 670
AcuI CTGAAG 1 cut(s) 743
AfiI CCNNNNNNNGG 3 cut(s) 271, 496, 645
AjuI GAANNNNNNNTTGG 2 cut(s) 268, 300
AluBI AGCT 7 cut(s) 61, 94, 190, 253, 305, 577, 664
AluI AGCT 7 cut(s) 61, 94, 190, 253, 305, 577, 664
Alw21I GWGCWC 1 cut(s) 452
Alw26I GTCTC 1 cut(s) 506
AoxI GGCC 2 cut(s) 129, 261
ApaI GGGCCC 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 253, 392
ApoI RAATTY 3 cut(s) 206, 562, 670
AseI ATTAAT 1 cut(s) 786
AspLEI GCGC 1 cut(s) 739
AspS9I GGNCC 3 cut(s) 130, 261, 262
AsuHPI GGTGA 2 cut(s) 374, 613
AxyI CCTNAGG 1 cut(s) 804
BaeGI GKGCMC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 265
BbsI GAAGAC 2 cut(s) 359, 575
Bbv12I GWGCWC 1 cut(s) 452
BbvI GCAGC 2 cut(s) 240, 404
BciVI GTATCC 1 cut(s) 648
BcoDI GTCTC 1 cut(s) 506
BfmI CTRYAG 1 cut(s) 254
BfuI GTATCC 1 cut(s) 648
BglI GCCNNNNNGGC 1 cut(s) 107
BisI GCNGC 2 cut(s) 254, 393
BlsI GCNGC 2 cut(s) 255, 394
BmgT120I GGNCC 3 cut(s) 130, 261, 262
BmiI GGNNCC 3 cut(s) 262, 263, 488
BpiI GAAGAC 2 cut(s) 359, 575
BplI GAGNNNNNCTC 2 cut(s) 434, 466
Bsc4I CCNNNNNNNGG 3 cut(s) 271, 496, 645
Bse1I ACTGG 1 cut(s) 639
Bse21I CCTNAGG 1 cut(s) 804
Bse3DI GCAATG 1 cut(s) 734
BseGI GGATG 2 cut(s) 514, 589
BseLI CCNNNNNNNGG 3 cut(s) 271, 496, 645
BseMI GCAATG 1 cut(s) 734
BseMII CTCAG 3 cut(s) 81, 564, 795
BseNI ACTGG 1 cut(s) 639
BseRI GAGGAG 1 cut(s) 250
BseSI GKGCMC 1 cut(s) 265
BseXI GCAGC 2 cut(s) 240, 404
BseYI CCCAGC 1 cut(s) 577
Bsh1236I CGCG 1 cut(s) 737
BshFI GGCC 2 cut(s) 131, 263
BsiHKAI GWGCWC 1 cut(s) 452
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 3 cut(s) 271, 496, 645
BsmAI GTCTC 1 cut(s) 506
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 2 cut(s) 131, 263
Bsp120I GGGCCC 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 265, 452
Bsp143I GATC 2 cut(s) 196, 364
BspANI GGCC 2 cut(s) 131, 263
BspCNI CTCAG 3 cut(s) 80, 565, 796
BspFNI CGCG 1 cut(s) 737
BspLI GGNNCC 3 cut(s) 262, 263, 488
BspMAI CTGCAG 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 734
BsrI ACTGG 1 cut(s) 639
BssMI GATC 2 cut(s) 196, 364
BssNAI GTATAC 1 cut(s) 592
Bst1107I GTATAC 1 cut(s) 592
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 3 cut(s) 67, 573, 804
BstF5I GGATG 2 cut(s) 514, 589
BstFNI CGCG 1 cut(s) 737
BstHHI GCGC 1 cut(s) 739
BstKTI GATC 2 cut(s) 199, 367
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 2 cut(s) 196, 364
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 254
BstSLI GKGCMC 1 cut(s) 265
BstUI CGCG 1 cut(s) 737
BstV1I GCAGC 2 cut(s) 240, 404
BstV2I GAAGAC 2 cut(s) 359, 575
BstZ17I GTATAC 1 cut(s) 592
Bsu36I CCTNAGG 1 cut(s) 804
BsuI GTATCC 1 cut(s) 648
BsuRI GGCC 2 cut(s) 131, 263
BtsCI GGATG 2 cut(s) 514, 589
BtsI GCAGTG 2 cut(s) 117, 444
BtsIMutI CAGTG 3 cut(s) 117, 218, 444
Cac8I GCNNGC 1 cut(s) 303
CfoI GCGC 1 cut(s) 739
Cfr13I GGNCC 3 cut(s) 130, 261, 262
DdeI CTNAG 3 cut(s) 67, 573, 804
DpnI GATC 2 cut(s) 198, 366
DpnII GATC 2 cut(s) 196, 364
DraI TTTAAA 1 cut(s) 676
Eco24I GRGCYC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 743
Eco81I CCTNAGG 1 cut(s) 804
EcoO109I RGGNCCY 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 265
FaqI GGGAC 1 cut(s) 330
FblI GTMKAC 1 cut(s) 591
Fnu4HI GCNGC 2 cut(s) 254, 393
FokI GGATG 2 cut(s) 521, 596
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 2 cut(s) 254, 393
GlaI GCGC 1 cut(s) 738
GluI GCNGC 2 cut(s) 254, 393
GsaI CCCAGC 1 cut(s) 581
HaeIII GGCC 2 cut(s) 131, 263
HhaI GCGC 1 cut(s) 739
Hin6I GCGC 1 cut(s) 737
HinP1I GCGC 1 cut(s) 737
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 1 cut(s) 476
HphI GGTGA 2 cut(s) 374, 613
Hpy166II GTNNAC 2 cut(s) 592, 797
Hpy188I TCNGA 3 cut(s) 70, 205, 723
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 2 cut(s) 592, 797
HpyAV CCTTC 5 cut(s) 166, 172, 270, 370, 682
HpyCH4V TGCA 5 cut(s) 26, 218, 256, 392, 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 3 cut(s) 67, 573, 804
HspAI GCGC 1 cut(s) 737
Kzo9I GATC 2 cut(s) 196, 364
LmnI GCTCC 4 cut(s) 99, 181, 187, 237
LpnPI CCDG 9 cut(s) 92, 104, 170, 242, 315, 501, 563, 652, 666
Lsp1109I GCAGC 2 cut(s) 240, 404
MaeIII GTNAC 1 cut(s) 601
MalI GATC 2 cut(s) 198, 366
MboI GATC 2 cut(s) 196, 364
MboII GAAGA 7 cut(s) 364, 414, 431, 554, 557, 580, 772
MhlI GDGCHC 2 cut(s) 265, 452
MmeI TCCRAC 1 cut(s) 623
MseI TTAA 7 cut(s) 144, 164, 614, 675, 699, 741, 786
MvnI CGCG 1 cut(s) 737
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeII GATC 2 cut(s) 196, 364
NlaIV GGNNCC 3 cut(s) 262, 263, 488
NmuCI GTSAC 1 cut(s) 601
PfeI GAWTC 1 cut(s) 476
PkrI GCNGC 2 cut(s) 255, 394
PshBI ATTAAT 1 cut(s) 786
PspFI CCCAGC 1 cut(s) 577
PspN4I GGNNCC 3 cut(s) 262, 263, 488
PspOMI GGGCCC 1 cut(s) 261
PspPI GGNCC 3 cut(s) 130, 261, 262
PstI CTGCAG 1 cut(s) 258
SaqAI TTAA 7 cut(s) 144, 164, 614, 675, 699, 741, 786
SatI GCNGC 2 cut(s) 254, 393
Sau3AI GATC 2 cut(s) 196, 364
Sau96I GGNCC 3 cut(s) 130, 261, 262
SduI GDGCHC 2 cut(s) 265, 452
SfcI CTRYAG 1 cut(s) 254
SspI AATATT 2 cut(s) 18, 142
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 7 cut(s) 144, 164, 614, 675, 699, 741, 786
Tru9I TTAA 7 cut(s) 144, 164, 614, 675, 699, 741, 786
TscAI CASTG 3 cut(s) 117, 225, 444
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 2 cut(s) 253, 392
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 5 cut(s) 17, 152, 555, 600, 642
TspRI CASTG 3 cut(s) 117, 225, 444
VspI ATTAAT 1 cut(s) 786
XapI RAATTY 3 cut(s) 206, 562, 670
XcmI CCANNNNNNNNNTGG 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.