Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000340

Physical Location & Seq

Genomic Coordinates Reverse (-)

70935334 .. 70937731

Gene Structure 2398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G040210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTTGCAGACGGGGTGGACTGGCGGGAGTTGGTCAGTCGCTGGCGGCGTGATTGTTGGCTCGTTGTTCATTGGTGGTGATTGGTGTGGGGTGGCGCCTGATCTGGCTTTTATTATTTGGGATATCGGCAAAGAAGTTATTGATGAAGATGATGAAAAATTGGAGGACTTGAAGACAGAATTTGGTGATGAAGTTTTTGAAGCTGTGAAAACTGCCCTAGCTGAATTGAACGAGTATAATCCAACTGGCAGATATCCAGTACTAGAGCTTTGGAATTTCAGGGAAAACAGGAAGGCGACGTTAGCAGAGGGTGTATCCCATCTACTGAACCAGATGAAACCTAATAAGCGGAGAAATGTTCGTCCAACCTCTGGTTGGAAGCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

129

Amino Acids

14.41

Weight (kDa)

4.79

Isoelectric Point (pI)

28.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	44 - 118	9.2e-32	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica	Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis	pycom01g15630
rosa_chinensis	RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata	RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora	Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii	Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa	Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha	Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana	Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	94
AccB7I	CCANNNNNTGG	1 cut(s)	371
AciI	CCGC	3 cut(s)	24, 45, 349
AcsI	RAATTY	2 cut(s)	179, 274
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	2 cut(s)	371, 375
AgsI	TTSAA	3 cut(s)	172, 200, 229
AluBI	AGCT	3 cut(s)	203, 221, 268
AluI	AGCT	3 cut(s)	203, 221, 268
AlwNI	CAGNNNCTG	1 cut(s)	41
ApoI	RAATTY	2 cut(s)	179, 274
AspLEI	GCGC	1 cut(s)	97
AsuHPI	GGTGA	2 cut(s)	89, 197
BanI	GGYRCC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	179
BccI	CCATC	1 cut(s)	327
BciVI	GTATCC	1 cut(s)	325
BfaI	CTAG	2 cut(s)	218, 263
BfoI	RGCGCY	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	325
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
BmcAI	AGTACT	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 375
Bse1I	ACTGG	3 cut(s)	25, 250, 257
BseLI	CCNNNNNNNGG	2 cut(s)	371, 375
BseNI	ACTGG	3 cut(s)	25, 250, 257
BshNI	GGYRCC	1 cut(s)	94
BslI	CCNNNNNNNGG	2 cut(s)	371, 375
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	3 cut(s)	24, 45, 349
BspLI	GGNNCC	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	94
BsrI	ACTGG	3 cut(s)	25, 250, 257
BssMI	GATC	1 cut(s)	100
BssNI	GRCGYC	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	179
BsuI	GTATCC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	43
CaiI	CAGNNNCTG	1 cut(s)	41
CfoI	GCGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	260
CviJI	RGCY	6 cut(s)	60, 107, 203, 221, 268, 382
CviKI_1	RGCY	6 cut(s)	60, 107, 203, 221, 268, 382
CviQI	GTAC	1 cut(s)	260
DinI	GGCGCC	1 cut(s)	96
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eco32I	GATATC	2 cut(s)	124, 254
EcoRV	GATATC	2 cut(s)	124, 254
EgeI	GGCGCC	1 cut(s)	96
EheI	GGCGCC	1 cut(s)	96
FaiI	YATR	1 cut(s)	237
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	46
FspBI	CTAG	2 cut(s)	218, 263
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	46
HaeII	RGCGCY	1 cut(s)	98
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HphI	GGTGA	2 cut(s)	89, 197
Hpy166II	GTNNAC	1 cut(s)	18
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpySE526I	ACGT	1 cut(s)	299
Hsp92I	GRCGYC	1 cut(s)	95
HspAI	GCGC	1 cut(s)	95
KasI	GGCGCC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	100
MaeI	CTAG	2 cut(s)	218, 263
MaeII	ACGT	1 cut(s)	299
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	158, 184
MluCI	AATT	4 cut(s)	158, 179, 224, 274
Mly113I	GGCGCC	1 cut(s)	95
MmeI	TCCRAC	3 cut(s)	266, 356, 389
MnlI	CCTC	3 cut(s)	157, 301, 379
MwoI	GCNNNNNNNGC	1 cut(s)	302
NarI	GGCGCC	1 cut(s)	95
NdeII	GATC	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PflMI	CCANNNNNTGG	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	47
PluTI	GGCGCC	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	96
PstNI	CAGNNNCTG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	1 cut(s)	100
ScaI	AGTACT	1 cut(s)	261
SetI	ASST	6 cut(s)	205, 223, 270, 302, 343, 371
SfoI	GGCGCC	1 cut(s)	96
Sse9I	AATT	4 cut(s)	158, 179, 224, 274
SsiI	CCGC	3 cut(s)	24, 45, 349
SspDI	GGCGCC	1 cut(s)	94
SspMI	CTAG	2 cut(s)	218, 263
TaiI	ACGT	1 cut(s)	302
TasI	AATT	4 cut(s)	158, 179, 224, 274
TatI	WGTACW	1 cut(s)	259
TauI	GCSGC	1 cut(s)	48
TspDTI	ATGAA	5 cut(s)	58, 159, 168, 204, 350
Van91I	CCANNNNNTGG	1 cut(s)	371
XapI	RAATTY	2 cut(s)	179, 274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	372
XspI	CTAG	2 cut(s)	218, 263
ZrmI	AGTACT	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.